{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T06:02:16Z","timestamp":1789970536252,"version":"4.0.1"},"reference-count":56,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"abstract":"<jats:sec>\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>\n                      <jats:italic>Sarcandra glabra<\/jats:italic>\n                      , an early-diverging angiosperm of the family Chloranthaceae, is extensively used in traditional medicine and has taxonomic importance. However, the research on the structural information of the complete mitochondrial genome of\n                      <jats:italic>S<\/jats:italic>\n                      .\n                      <jats:italic>glabra<\/jats:italic>\n                      is limited, with no data available for SSR, Ka\/Ks ratios, codon analysis, or RNA editing.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      In this study, we present the complete mitochondrial genome of\n                      <jats:italic>S<\/jats:italic>\n                      .\n                      <jats:italic>glabra<\/jats:italic>\n                      , obtained by high-throughput sequencing using Illumina and Nanopore platforms. It enabled the assembly of a multi-branched genome, consisting of a linear chromosome of 1,120,880 bp and a circular chromosome of 192,931 bp. The annotation identified a total of 81 genes, including 39 protein-coding genes, 21 distinct transfer RNAs with multiple gene copies, and 3 ribosomal RNAs, with an overall GC content of 46.03%. The analysis across 9,547 codons revealed a strong preference for A or U ending codons, and serine was found to be the most common amino acid. A total of 524 RNA editing sites were authenticated via RNA-seq, with the\n                      <jats:italic>nad5<\/jats:italic>\n                      exhibiting the highest frequency of editing events. Ka\/Ks analysis showed that the majority of genes were under purifying selection, while increased ratios in\n                      <jats:italic>nad4<\/jats:italic>\n                      ,\n                      <jats:italic>cob<\/jats:italic>\n                      , and\n                      <jats:italic>rpl16<\/jats:italic>\n                      implied instances of adaptive evolution. Extensive potential for chromosomal rearrangement was shown by 399 simple sequence repeats and over 3,585 interspersed repetitions, mostly consisting of short forward or palindromic motifs. Phylogenomic analyses of 21 angiosperm mitochondrial genomes placed\n                      <jats:italic>S<\/jats:italic>\n                      .\n                      <jats:italic>glabra<\/jats:italic>\n                      within Chloranthaceae, clustering with\n                      <jats:italic>Chloranthus spicatus<\/jats:italic>\n                      and forming a well-supported sister relationship with\n                      <jats:italic>Hedyosmum orientale<\/jats:italic>\n                      .\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      This work offers the first comprehensive analysis of the\n                      <jats:italic>S<\/jats:italic>\n                      .\n                      <jats:italic>glabra<\/jats:italic>\n                      mitochondrial genome, highlighting its structural complexity, dynamic RNA editing, signatures of adaptive evolution, and its phylogenetic position among basal angiosperms.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.3389\/fpls.2026.1899974","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T05:36:40Z","timestamp":1789969000000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Genomic insights into the mitochondrial architecture of Sarcandra glabra: structure, evolution, and functional implications"],"prefix":"10.3389","volume":"17","author":[{"given":"Yunyi","family":"Zhou","sequence":"first","affiliation":[{"name":"Guangxi Traditional Chinese Medicine (TCM) Resources General Survey and Data Collection Key Laboratory\/the Center for Phylogeny and Evolution of Medicinal Plants, National Center for TCM Inheritance and Innovation, Guangxi Botanical Garden of Medicinal Plants","place":["Nanning, 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