{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T06:27:48Z","timestamp":1786429668932,"version":"build-2736575974"},"reference-count":104,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T00:00:00Z","timestamp":1786406400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Syst. Biol."],"abstract":"<jats:p>\n                    This mesocosm study evaluated the impact of various organic manure treatments on the growth performance of the copepod\n                    <jats:italic>M. hyalinus<\/jats:italic>\n                    and its associated microbial communities. Laboratory reared copepod,\n                    <jats:italic>M. hyalinus<\/jats:italic>\n                    was fed with six different types of filtrate of organic manure comprising of CM (cow manure), PM (poultry manure) and combinations CMC* (Cow dung, groundnut cake, mustard oil cake, rice bran, fish waste and single super phosphate), PMC** (Poultry manure, groundnut cake, mustard oil cake, rice bran, fish waste and single super phosphate), PMB*** (PMC +\n                    <jats:italic>Bacillus clausii<\/jats:italic>\n                    ), CMB**** (CMC +\n                    <jats:italic>B. clausii<\/jats:italic>\n                    ). Results indicated that CMC, PMC, and CMB at a concentration of 8.00\u00a0mL\/L produced the highest population densities. CMC achieved a peak of 650.00 \u00b1 11.55 Individuals\/L by Day 6, while PMC and CMB peaked later on Day 9 (463.33 \u00b1 6.67 Individuals\/L) and Day 15 (563.33 \u00b1 6.67 Individuals\/L), respectively. 16S rRNA amplicon sequencing analysis of the high performing media (CMC and PMC) identified\n                    <jats:italic>Actinobacteriota<\/jats:italic>\n                    ,\n                    <jats:italic>Proteobacteria<\/jats:italic>\n                    ,\n                    <jats:italic>Firmicutes<\/jats:italic>\n                    , and\n                    <jats:italic>Bacteroidota<\/jats:italic>\n                    as the dominant bacterial phyla. In CMC,\n                    <jats:italic>Actinobacteriota<\/jats:italic>\n                    (54%) and\n                    <jats:italic>Proteobacteria<\/jats:italic>\n                    (20%\u201347%) predominated at peak growth. In contrast, PMC was dominated by\n                    <jats:italic>Firmicutes<\/jats:italic>\n                    (20%\u201339%) and\n                    <jats:italic>Campylobacterota<\/jats:italic>\n                    (26%\u201328%). These findings suggest that manure composition significantly dictates microbial structure and subsequent copepod productivity; cow manure based media promote rapid early growth, whereas poultry manure supports sustained population stability. The identified bacterial consortia offer a framework for developing targeted bioinoculants to optimize\n                    <jats:italic>Mesocyclops hyalinus<\/jats:italic>\n                    culture systems. By harnessing these microbiome driven insights, producers can enhance copepod yields and population stability. This research provides a scalable, sustainable strategy for mass producing live feed, addressing a critical bottleneck in global freshwater aquaculture.\n                  <\/jats:p>","DOI":"10.3389\/fsysb.2026.1845217","type":"journal-article","created":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T05:35:21Z","timestamp":1786426521000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Microbial metacommunity dynamics associated with the cyclopoid copepod Mesocyclops hyalinus (Rehberg, 1880) in freshwater mesocosm using low-cost organic media"],"prefix":"10.3389","volume":"6","author":[{"given":"Rida","family":"Riyaz","sequence":"first","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sukham","family":"Munilkumar","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Na-i-sabet","family":"Dohtdong","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paramita","family":"Banerjee Sawant","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Perumal","family":"Santhanam","sequence":"additional","affiliation":[{"name":"Department of Marine Science, Bharathidasan University","place":["Tiruchirappalli, Tamil Nadu, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Madhuri","family":"Pathak","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S. P.","family":"Shukla","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pradeep Kumar","family":"Singh","sequence":"additional","affiliation":[{"name":"Krishi Vigyan Kendra Mungeli, Indira Gandhi Krishi Vishwavidyalaya","place":["Raipur, Chhattisgargh, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kenyum","family":"Lollen","sequence":"additional","affiliation":[{"name":"Division of Aquaculture, Indian Council of Agricultural Research-Central Institute of Fisheries Education (ICAR-CIFE), Versova","place":["Mumbai, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pranab","family":"Gogoi","sequence":"additional","affiliation":[{"name":"Indian Council of Agricultural Research-Central Inland Fisheries Research Institute","place":["Barrackpore, West Bengal, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,8,11]]},"reference":[{"key":"B1","first-page":"68","article-title":"Effect of processing on nutritional value of rice (Oryza sativa)","volume":"6","author":"Abbas","year":"2011","journal-title":"Wor. 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