{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T04:29:56Z","timestamp":1787027396636,"version":"build-2736575974"},"reference-count":83,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2025,7,29]],"date-time":"2025-07-29T00:00:00Z","timestamp":1753747200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["2021-38821-34710"],"award-info":[{"award-number":["2021-38821-34710"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["2022-67017-36982"],"award-info":[{"award-number":["2022-67017-36982"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Vet. Sci."],"abstract":"<jats:sec>\n                    <jats:title>Introduction<\/jats:title>\n                    <jats:p>\n                      Cattle are well-recognized reservoirs of\n                      <jats:italic>Salmonella<\/jats:italic>\n                      ; however, reports of atypical hydrogen sulfide (H\n                      <jats:sub>2<\/jats:sub>\n                      S)-negative strains from bovine sources remain scarce. This cross-sectional study aimed to investigate the antimicrobial resistance profiles and epidemiology of\n                      <jats:italic>Salmonella<\/jats:italic>\n                      among rural cow-calf herds in Alabama, United States, with a particular focus on isolating emerging H\n                      <jats:sub>2<\/jats:sub>\n                      S-negative variants.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Method<\/jats:title>\n                    <jats:p>\n                      Between April and May 2024, a total of 311 fecal samples were collected from cattle across 18 farm operations in six counties. Samples were cultured for\n                      <jats:italic>Salmonella<\/jats:italic>\n                      , and recovered isolates were identified using whole genome sequencing and the\n                      <jats:italic>Salmonella In Silico<\/jats:italic>\n                      Typing Resource. H\n                      <jats:sub>2<\/jats:sub>\n                      S production was assessed using Xylose Lysine Deoxycholate agar, Lysine Iron Agar, and Triple Sugar Iron agar. Antimicrobial susceptibility testing was performed against 24 antimicrobial agents. A mixed-effects logistic regression model was used for statistical analysis.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      Overall, 3.5% (11 out of 311) of animals from 27.8% (5 out of 18) of the farms tested positive for\n                      <jats:italic>Salmonella<\/jats:italic>\n                      . Fifteen isolates representing six serovars were identified:\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Thompson (5 out of 15),\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Hadar (4 out of 15),\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Braenderup (3 out of 15),\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Enteritidis (1 out of 15),\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Bareilly (1 out of 15), and\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Typhimurium (1 out of 15). Notably, the\n                      <jats:italic>tet(A)<\/jats:italic>\n                      gene conferring tetracycline resistance was detected exclusively in the\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Hadar isolates. Diarrheic animals were significantly more likely to shed\n                      <jats:italic>Salmonella<\/jats:italic>\n                      in their feces (\n                      <jats:italic>p<\/jats:italic>\n                      value = 0.0192). Importantly, the\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Typhimurium isolate was identified as an H\n                      <jats:sub>2<\/jats:sub>\n                      S-negative strain, carrying an A &amp;gt; C missense mutation in the\n                      <jats:italic>phsC<\/jats:italic>\n                      gene and a C &amp;gt; T synonymous mutation in the\n                      <jats:italic>cysI<\/jats:italic>\n                      gene.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusion<\/jats:title>\n                    <jats:p>\n                      To our knowledge, this is the first report of an H\n                      <jats:sub>2<\/jats:sub>\n                      S-negative\n                      <jats:italic>Salmonella<\/jats:italic>\n                      Typhimurium isolate from cattle feces. These findings also reveal a notable prevalence of\n                      <jats:italic>Salmonella<\/jats:italic>\n                      shedding among an underexplored population of rural cow-calf herds in the southeastern United States. The potential public health implications of these findings merit further investigation.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.3389\/fvets.2025.1619880","type":"journal-article","created":{"date-parts":[[2025,7,29]],"date-time":"2025-07-29T04:10:28Z","timestamp":1753762228000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":3,"title":["Detection of a hydrogen sulfide-negative Salmonella Typhimurium from cattle feces in a cross-sectional study of cow\u2013calf herds in the Southeastern United States"],"prefix":"10.3389","volume":"12","author":[{"given":"Kingsley E.","family":"Bentum","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emmanuel","family":"Kuufire","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rejoice","family":"Nyarku","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chase","family":"Woods","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Khim","family":"Ale","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luis","family":"McKie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"McKenzie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Charlene R.","family":"Jackson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Abiodun","family":"Adesiyun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tony","family":"Opoku-Agyemang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Temesgen","family":"Samuel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gopal","family":"Reddy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Woubit","family":"Abebe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2025,7,29]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"1412291","DOI":"10.3389\/fsci.2024.1412291","article-title":"Thinking beyond pathogen surveillance: building resilient biotech ecosystems to combat the next pandemic","volume":"2","author":"Crone","year":"2024","journal-title":"Front Sci"},{"key":"B2","volume-title":"Veterinary Epidemiologic Research. Vol. 2","author":"Dohoo","year":"2009"},{"key":"B3","doi-asserted-by":"publisher","first-page":"1853","DOI":"10.1186\/s12889-024-19347-3","article-title":"The spectrum of health conditions in community-based cross-sectional surveys in Southeast Asia 2010-21: a scoping review","volume":"24","author":"Zhang","year":"2024","journal-title":"BMC Public Health"},{"key":"B4","unstructured":"National Animal Health Monitoring System (NAHMS)\n          \n          2025"},{"key":"B5","doi-asserted-by":"publisher","first-page":"100435","DOI":"10.1016\/j.jfp.2024.100435","article-title":"Prevalence and characterization of Salmonella species on U.S. swine sites as part of the NAHMS 2021 swine enteric study","volume":"88","author":"Hempstead","year":"2025","journal-title":"J Food Prot"},{"key":"B6","unstructured":"NAHMS Beef Cow-Calf Studies\n          \n          2024"},{"key":"B7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12879-018-3209-3","article-title":"Antibiotic resistance and molecular characterization of the hydrogen sulfide-negative phenotype among diverse Salmonella serovars in China","volume":"18","author":"Xie","year":"2018","journal-title":"BMC Infect Dis"},{"key":"B8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.fm.2014.04.010","article-title":"Increasing prevalence of hydrogen sulfide negative Salmonella in retail meats","volume":"43","author":"Lin","year":"2014","journal-title":"Food Microbiol"},{"key":"B9","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/pathogens9090701","article-title":"Atypical non-H2S-producing monophasic Salmonella Typhimurium ST3478 strains from chicken meat at processing stage are adapted to diverse stresses","volume":"9","author":"Mour\u00e3o","year":"2020","journal-title":"Pathogens"},{"key":"B10","doi-asserted-by":"publisher","first-page":"2557","DOI":"10.1128\/JCM.00377-14","article-title":"Emergence and prevalence of non-H2S-producing Salmonella enterica serovar Senftenberg isolates belonging to novel sequence type 1751 in China","volume":"52","author":"Yi","year":"2014","journal-title":"J Clin Microbiol"},{"key":"B11","doi-asserted-by":"publisher","first-page":"e0161352","DOI":"10.1371\/journal.pone.0161352","article-title":"Molecular characterization of Salmonella enterica serovar aberdeen negative for H2S production in China","volume":"11","author":"Wu","year":"2016","journal-title":"PLoS ONE"},{"key":"B12","doi-asserted-by":"publisher","first-page":"104744","DOI":"10.1016\/j.fm.2025.104744","article-title":"Comprehensive phenotyping combined with multi-omics of Salmonella Infantis and its H2S negative variant - resolving adaption mechanisms to environmental changes","volume":"129","author":"Drauch","year":"2025","journal-title":"Food Microbiol"},{"key":"B13","doi-asserted-by":"publisher","first-page":"620","DOI":"10.4315\/0362-028X-61.5.620","article-title":"Automated detection of hydrogen sulfide release from thiosulfate by Salmonella spp","volume":"61","author":"Shelef","year":"1998","journal-title":"J Food Prot"},{"key":"B14","doi-asserted-by":"publisher","first-page":"1241","DOI":"10.1007\/s10482-020-01432-3","article-title":"Molecular characterisation of hydrogen sulfide negative Salmonella enterica serovar Havana","volume":"113","author":"M\u00fc\u015ftak","year":"2020","journal-title":"Int J Gen Mol Microbiol"},{"key":"B15","doi-asserted-by":"publisher","first-page":"110771","DOI":"10.1016\/j.foodcont.2024.110771","article-title":"An overview of rapid detection methods for Salmonella","volume":"167","author":"Yang","year":"2025","journal-title":"Food Control"},{"key":"B16","doi-asserted-by":"publisher","first-page":"1900643","DOI":"10.2807\/1560-7917.ES.2019.24.47.1900643","article-title":"Outbreak of unusual H2S-negative monophasic Salmonella Typhimurium strain likely associated with small tomatoes, Sweden, August to October 2019","volume":"24","author":"Colombe","year":"2019","journal-title":"Eurosurveillance"},{"key":"B17","doi-asserted-by":"publisher","first-page":"334","DOI":"10.3343\/alm.2020.40.4.334","article-title":"Isolation of non-hydrogen sulfide-producing Salmonella enterica serovar Infantis from a clinical sample: the first case in Korea","volume":"40","author":"Lee","year":"2020","journal-title":"Ann Lab Med"},{"key":"B18","doi-asserted-by":"publisher","first-page":"328","DOI":"10.1128\/JCM.02225-12","article-title":"Genetic analysis of non-hydrogen sulfide-producing Salmonella enterica serovar Typhimurium and S. enterica serovar Infantis isolates in Japan","volume":"51","author":"Sakano","year":"2013","journal-title":"J Clin Microbiol"},{"key":"B19","doi-asserted-by":"publisher","first-page":"4090","DOI":"10.1128\/JCM.01775-14","article-title":"Al, Alfouzan W, Sheikh AR, Udo E, Izumiya H, Bulach DM, Seemann T. Isolation of Salmonella enterica serovar Kentucky strain ST 198 and its H2S-negative variant from a patient: implications for diagnosis","volume":"52","author":"Albert","year":"2014","journal-title":"J Clin Microbiol"},{"key":"B20","doi-asserted-by":"publisher","first-page":"261935","DOI":"10.3389\/fmicb.2017.00737","article-title":"Temporal genomic phylogeny reconstruction indicates a geospatial transmission path of Salmonella Cerro in the United States and a clade-specific loss of hydrogen sulfide production","volume":"8","author":"Kovac","year":"2017","journal-title":"Front Microbiol"},{"key":"B21","doi-asserted-by":"publisher","first-page":"102","DOI":"10.3389\/fvets.2019.00102","article-title":"Prevalence and serotype diversity of Salmonella in apparently healthy cattle: systematic review and meta-analysis of published studies, 2000\u20132017","volume":"6","author":"Gutema","year":"2019","journal-title":"Front Vet Sci"},{"key":"B22","unstructured":"United States Department of Agriculture -Economic Research Service (USDA-ERS). Cattle & beef - Sector at a glance | Economic Research Service"},{"key":"B23","unstructured":"2024"},{"key":"B24","unstructured":"PennState Extension - Feeding Beef Cattle\n          \n          2025"},{"key":"B25","unstructured":"PennState Extension - Beef Cow-calf Production\n          \n          2024"},{"key":"B26","doi-asserted-by":"publisher","first-page":"10","DOI":"10.37433\/aad.v4i4.309","article-title":"Risk information sufficiency & seeking of southeastern United States beef producers","volume":"4","author":"Rourke","year":"2023","journal-title":"Adv Agric Dev"},{"key":"B27","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-08-100938-3.00001-2","article-title":"Overview of cattle production systems","author":"Endres","year":"2018","journal-title":"Adv Cattle Welf"},{"key":"B28","unstructured":"Cooperative Extension System\n          \n          2025"},{"key":"B29","unstructured":"Thrusfield\n              M\n            \n          \n          Hoboken, NJ\n          John Wiley & Sons\n          Veterinary Epidemiology\n          \n          2013"},{"key":"B30","doi-asserted-by":"publisher","first-page":"531","DOI":"10.4315\/0362-028X.JFP-15-409","article-title":"Diagnostic accuracy of rectoanal mucosal swab of feedlot cattle for detection and enumeration of Salmonella enterica","volume":"79","author":"Agga","year":"2016","journal-title":"J Food Prot"},{"key":"B31","unstructured":"MLG 4.13 Isolation and Identification of Salmonella from Meat, Poultry, Pasteurized Egg, Carcass, and Environmental Sponges | Enhanced Reader\n          \n          2024"},{"key":"B32","doi-asserted-by":"publisher","first-page":"14","DOI":"10.21608\/javs.2022.146858.1158","article-title":"A review of the International Organization for Standardization (ISO) guidelines for the detection of Salmonella from faeces","volume":"7","author":"Oludairo","year":"2022","journal-title":"J Appl Vet Sci"},{"key":"B33","doi-asserted-by":"publisher","first-page":"1968","DOI":"10.3382\/ps.0551968","article-title":"A simplified biochemical system to screen Salmonella isolates from poultry for serotyping","volume":"55","author":"Cox","year":"1976","journal-title":"Poult Sci"},{"key":"B34","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1093\/bioinformatics\/btu661","article-title":"A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data","volume":"31","author":"Coil","year":"2014","journal-title":"Bioinformatics"},{"key":"B35","doi-asserted-by":"publisher","first-page":"e0147101","DOI":"10.1371\/journal.pone.0147101","article-title":"The Salmonella in silico typing resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies","volume":"11","author":"Yoshida","year":"2016","journal-title":"PLoS ONE"},{"key":"B36","doi-asserted-by":"publisher","first-page":"1002776","DOI":"10.1371\/journal.ppat.1002776","article-title":"Multilocus sequence typing as a replacement for serotyping in Salmonella enterica","volume":"8","author":"Achtman","year":"2012","journal-title":"PLoS Pathog"},{"key":"B37","doi-asserted-by":"crossref","unstructured":"Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications\n          \n          124\n          \n            \n              Jolley\n              KA\n            \n            \n              Bray\n              JE\n            \n            \n              Maiden\n              MCJ\n            \n          \n          10.12688\/wellcomeopenres.14826.1\n          30345391\n          Wellcome Open Res\n          3\n          2018","DOI":"10.12688\/wellcomeopenres.14826.1"},{"key":"B38","doi-asserted-by":"publisher","first-page":"W293","DOI":"10.1093\/nar\/gkab301","article-title":"Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation","volume":"49","author":"Letunic","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"B39","unstructured":"282\n          \n          32600252\n          CLSI M100 30th Edition Performance Standards for Antimicrobial Susceptibility Testing\n          \n          2020"},{"key":"B40","doi-asserted-by":"publisher","first-page":"192","DOI":"10.1016\/j.ijid.2008.05.1068","article-title":"In-vitro activity of tigecycline against clinical isolates of Acinetobacter baumannii in Taiwan determined by the broth microdilution and disk diffusion methods","volume":"32","author":"Liao","year":"2008","journal-title":"Int J Antimicrob Agents"},{"key":"B41","doi-asserted-by":"publisher","first-page":"3138","DOI":"10.1128\/AAC.02961-15","article-title":"Susceptibility of multidrug-resistant gram-negative urine isolates to oral antibiotics","volume":"60","author":"Hirsch","year":"2016","journal-title":"Antimicrob Agents Chemother"},{"key":"B42","doi-asserted-by":"publisher","first-page":"1511","DOI":"10.2147\/IDR.S289499","article-title":"Comparative evaluation of seven tigecycline susceptibility testing methods for carbapenem-resistant Enterobacteriaceae","volume":"14","author":"Li","year":"2021","journal-title":"Infect Drug Resist"},{"key":"B43","doi-asserted-by":"publisher","first-page":"D566","DOI":"10.1093\/nar\/gkw1004","article-title":"CARD 2017: Expansion and model-centric curation of the comprehensive antibiotic resistance database","volume":"45","author":"Jia","year":"2017","journal-title":"Nucleic Acids Res"},{"key":"B44","doi-asserted-by":"publisher","first-page":"3491","DOI":"10.1093\/jac\/dkaa345","article-title":"ResFinder 40 for predictions of phenotypes from genotypes","volume":"75","author":"Bortolaia","year":"2020","journal-title":"J Antimicrob Chemother"},{"key":"B45","doi-asserted-by":"publisher","first-page":"D678","DOI":"10.1093\/nar\/gkac1003","article-title":"Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR","volume":"51","author":"Olson","year":"2023","journal-title":"Nucleic Acids Res"},{"key":"B46","unstructured":"Li\n              H\n            \n          \n          Aligning Sequence Reads, Clone Sequences and Assembly Contigs with BWA-MEM\n          \n          2013"},{"key":"B47","unstructured":"Garrison\n              E\n            \n            \n              Marth\n              G\n            \n          \n          Haplotype-based Variant Detection from Short-read Sequencing\n          \n          2012"},{"key":"B48","doi-asserted-by":"publisher","first-page":"80","DOI":"10.4161\/fly.19695","article-title":"A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3","volume":"6","author":"Cingolani","year":"2012","journal-title":"Fly"},{"key":"B49","doi-asserted-by":"publisher","first-page":"1","DOI":"10.18637\/jss.v067.i01","article-title":"Fitting linear mixed-effects models using lme4","volume":"67","author":"Bates","year":"2015","journal-title":"J Stat Softw"},{"key":"B50","unstructured":"A Language and Environment for Statistical Computing\n          \n          2013"},{"key":"B51","unstructured":"Salmonella on U.S. Beef Cow-calf Operations NAHMS Beef 2017 Study Information Brief\n          \n          2023"},{"key":"B52","unstructured":"Beef 2017: Beef Cow-calf Management Practices in the United States, 2017\n          \n          2020"},{"key":"B53","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1051\/vetres:2008040","article-title":"Potential associations between fecal shedding of Salmonella in feedlot cattle treated for apparent respiratory disease and subsequent adverse health outcomes","volume":"40","author":"Alam","year":"2009","journal-title":"Vet Res"},{"key":"B54","doi-asserted-by":"publisher","first-page":"878408","DOI":"10.3389\/fanim.2022.878408","article-title":"Salmonella prevalence varies over time and space in three large, adjacent cattle operations in the southwestern United States","volume":"3","author":"Hanson","year":"2022","journal-title":"Front Anim Sci"},{"key":"B55","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/j.prevetmed.2004.10.005","article-title":"Cattle and environmental sample-level factors associated with the presence of Salmonella in a multi-state study of conventional and organic dairy farms","volume":"67","author":"Fossler","year":"2005","journal-title":"Prev Vet Med"},{"key":"B56","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1089\/fpd.2009.0481","article-title":"The effect of clinical outbreaks of salmonellosis on the prevalence of fecal Salmonella shedding among dairy cattle in New York","volume":"7","author":"Cummings","year":"2010","journal-title":"Foodborne Pathog Dis"},{"key":"B57","doi-asserted-by":"publisher","first-page":"645","DOI":"10.2460\/javma.2002.220.645","article-title":"Prevalence of fecal shedding of Salmonella spp in dairy herds","volume":"220","author":"Huston","year":"2002","journal-title":"J Am Vet Med Assoc"},{"key":"B58","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1016\/j.cvfa.2008.10.009","article-title":"Salmonella in calves","volume":"25","author":"Mohler","year":"2009","journal-title":"Vet Clin North Am - Food Anim Pract"},{"key":"B59","doi-asserted-by":"publisher","first-page":"1578","DOI":"10.2460\/javma.234.12.1578","article-title":"Fecal shedding of Salmonella spp among cattle admitted to a veterinary medical teaching hospital","volume":"234","author":"Cummings","year":"2009","journal-title":"J Am Vet Med Assoc"},{"key":"B60","doi-asserted-by":"publisher","first-page":"872","DOI":"10.3390\/microorganisms9040872","article-title":"Occurrence of Salmonella in the cattle production in France","volume":"9","author":"Bonifait","year":"2021","journal-title":"Microorganisms"},{"key":"B61","doi-asserted-by":"publisher","first-page":"622495","DOI":"10.3389\/fvets.2020.622495","article-title":"Age dependence of antimicrobial resistance among fecal bacteria in animals: a scoping review","volume":"7","author":"Gaire","year":"2021","journal-title":"Front Vet Sci"},{"key":"B62","doi-asserted-by":"publisher","first-page":"752","DOI":"10.1128\/AEM.70.2.752-757.2004","article-title":"Role of calf-adapted Escherichia coli in maintenance of antimicrobial drug resistance in dairy calves","volume":"70","author":"Khachatryan","year":"2004","journal-title":"Appl Environ Microbiol"},{"key":"B63","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1016\/j.prevetmed.2009.07.002","article-title":"The duration of fecal Salmonella shedding following clinical disease among dairy cattle in the northeastern USA","volume":"92","author":"Cummings","year":"2009","journal-title":"Prev Vet Med"},{"key":"B64","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1186\/s12866-016-0638-2","article-title":"Fecal prevalence, serotype distribution and antimicrobial resistance of Salmonellae in dairy cattle in central Ethiopia","volume":"16","author":"Eguale","year":"2016","journal-title":"BMC Microbiol"},{"key":"B65","doi-asserted-by":"publisher","first-page":"54","DOI":"10.5455\/ajvs.197182","article-title":"Some studies on Salmonella enterica associated with diarrhea in cattle","volume":"48","author":"Abd El-Rahman","year":"2016","journal-title":"Alexandria J Vet Sci"},{"key":"B66","doi-asserted-by":"publisher","first-page":"e0034722","DOI":"10.1371\/journal.pone.0034722","article-title":"Selective enrichment media bias the types of Salmonella enterica strains isolated from mixed strain cultures and complex enrichment broths","volume":"7","author":"Gorski","year":"2012","journal-title":"PLoS ONE"},{"key":"B67","doi-asserted-by":"publisher","first-page":"e00033","DOI":"10.1128\/aem.00033-23","article-title":"A longitudinal study on the dynamics of Salmonella enterica prevalence and serovar composition in beef cattle feces and lymph nodes and potential contributing sources from the feedlot environment","volume":"89","author":"Nickodem","year":"2023","journal-title":"Appl Environ Microbiol"},{"key":"B68","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1089\/fpd.2012.1275","article-title":"Cross-sectional study examining Salmonella enterica carriage in subiliac lymph nodes of cull and feedlot cattle at Harvest","volume":"10","author":"Gragg","year":"2013","journal-title":"Foodborne Pathog Dis"},{"key":"B69","doi-asserted-by":"publisher","first-page":"906","DOI":"10.4315\/JFP-21-410","article-title":"Prevalence and sources of Salmonella lymph node infection in special-fed veal calves","volume":"85","author":"Locke","year":"2022","journal-title":"J Food Prot"},{"key":"B70","doi-asserted-by":"publisher","first-page":"100071","DOI":"10.1016\/j.jfp.2023.100071","article-title":"Salmonella outbreaks linked to beef, United States","volume":"86","author":"Canning","year":"2023","journal-title":"J Food Prot"},{"key":"B71","unstructured":"Outbreak Investigation of Salmonella: Cucumbers (June 2024) | FDA\n          \n          2024"},{"key":"B72","doi-asserted-by":"publisher","first-page":"e86","DOI":"10.1017\/S0950268824000682","article-title":"Salmonella Hadar linked to two distinct transmission vehicles highlights challenges to enteric disease outbreak investigations","volume":"152","author":"Brandenburg","year":"2024","journal-title":"Epidemiol Infect"},{"key":"B73","doi-asserted-by":"publisher","first-page":"513","DOI":"10.15585\/mmwr.mm7219a2","article-title":"Multistate outbreak of Salmonella Thompson infections linked to seafood exposure \u2014 United States, 2021","volume":"72","author":"Shen","year":"2023","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"B74","doi-asserted-by":"publisher","first-page":"159","DOI":"10.3389\/fpubh.2018.00159","article-title":"Presence and persistence of Salmonella in water: the impact on microbial quality of water and food safety","volume":"6","author":"Liu","year":"2018","journal-title":"Front Public Heal"},{"key":"B75","doi-asserted-by":"publisher","first-page":"1314","DOI":"10.3390\/antibiotics10111314","article-title":"Presence of tetracycline and sulfonamide resistance genes in Salmonella spp: literature review","volume":"10","author":"Pavelquesi","year":"2021","journal-title":"Antibiotics"},{"key":"B76","doi-asserted-by":"publisher","first-page":"711472","DOI":"10.3389\/fmicb.2021.711472","article-title":"Genotypic and phenotypic characterization of antimicrobial resistance profiles in non-typhoidal Salmonella enterica strains isolated from Cambodian informal markets","volume":"12","author":"Schwan","year":"2021","journal-title":"Front Microbiol"},{"key":"B77","doi-asserted-by":"publisher","first-page":"2902","DOI":"10.1111\/jam.15738","article-title":"\u2018To be, or not to be'\u2014the dilemma of \u2018silent' antimicrobial resistance genes in bacteria","volume":"133","author":"Deekshit","year":"2022","journal-title":"J Appl Microbiol"},{"key":"B78","doi-asserted-by":"publisher","first-page":"421","DOI":"10.33073\/pjm-2021-040","article-title":"Silent genes: antimicrobial resistance and antibiotic production","volume":"70","author":"Stasiak","year":"2021","journal-title":"Polish J Microbiol"},{"key":"B79","doi-asserted-by":"publisher","first-page":"782","DOI":"10.3390\/antibiotics11060782","article-title":"Resistance genes, plasmids, multilocus sequence typing (MLST), and phenotypic resistance of Non-Typhoidal Salmonella (NTS) isolated from slaughtered chickens in Burkina Faso","volume":"11","author":"Kagamb\u00e8ga","year":"2022","journal-title":"Antibiotics"},{"key":"B80","doi-asserted-by":"publisher","first-page":"1433","DOI":"10.1093\/jac\/dkab045","article-title":"Expression of the qepA1 gene is induced under antibiotic exposure","volume":"76","author":"Brandis","year":"2021","journal-title":"J Antimicrob Chemother"},{"key":"B81","doi-asserted-by":"publisher","first-page":"1728","DOI":"10.3390\/antibiotics13030247","article-title":"In vitro microevolution and co-selection assessment of amoxicillin and cefotaxime impact on Escherichia coli resistance development","volume":"13","author":"Kerek","year":"2024","journal-title":"Antibiotics"},{"key":"B82","doi-asserted-by":"publisher","first-page":"evab141","DOI":"10.1093\/gbe\/evab141","article-title":"Effects of synonymous mutations beyond codon bias: the evidence for adaptive synonymous substitutions from microbial evolution experiments","volume":"13","author":"Bailey","year":"2021","journal-title":"Genome Biol Evol"},{"key":"B83","doi-asserted-by":"publisher","first-page":"3919","DOI":"10.1016\/j.jmb.2013.07.014","article-title":"Molecular mechanisms of disease-causing missense mutations","volume":"425","author":"Stefl","year":"2013","journal-title":"J Mol Biol"}],"container-title":["Frontiers in Veterinary Science"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fvets.2025.1619880\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,7,29]],"date-time":"2025-07-29T04:10:33Z","timestamp":1753762233000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fvets.2025.1619880\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,7,29]]},"references-count":83,"alternative-id":["10.3389\/fvets.2025.1619880"],"URL":"https:\/\/doi.org\/10.3389\/fvets.2025.1619880","relation":{},"ISSN":["2297-1769"],"issn-type":[{"value":"2297-1769","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,7,29]]},"article-number":"1619880"}}