{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,28]],"date-time":"2026-02-28T04:21:51Z","timestamp":1772252511855,"version":"3.50.1"},"reference-count":8,"publisher":"MDPI AG","issue":"2","license":[{"start":{"date-parts":[[2020,4,24]],"date-time":"2020-04-24T00:00:00Z","timestamp":1587686400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002347","name":"Bundesministerium f\u00fcr Bildung und Forschung","doi-asserted-by":"publisher","award":["FKZ 031A147, GO-Bio"],"award-info":[{"award-number":["FKZ 031A147, GO-Bio"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010447","name":"Deutsches Zentrum f\u00fcr Herz-Kreislaufforschung","doi-asserted-by":"publisher","award":["-"],"award-info":[{"award-number":["-"]}],"id":[{"id":"10.13039\/100010447","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["SFB 1002, Project C03"],"award-info":[{"award-number":["SFB 1002, Project C03"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Data"],"abstract":"<jats:p>Storing scientific data on the filesystem in a meaningful and transparent way is no trivial task. In particular, when the data have to be accessed after their originator has left the lab, the importance of a standardized filesystem layout cannot be underestimated. It is desirable to have a structure that allows for the unique categorization of all kinds of data from experimental results to publications. They have to be accessible to a broad variety of workflows, e.g., via graphical user interface as well as via command line, in order to find widespread acceptance. Furthermore, the inclusion of already existing data has to be as simple as possible. We propose a three-level layout to organize and store scientific data that incorporates the full chain of scientific data management from data acquisition to analysis to publications. Metadata are saved in a standardized way and connect original data to analyses and publications as well as to their originators. A simple software tool to check a file structure for compliance with the proposed structure is presented.<\/jats:p>","DOI":"10.3390\/data5020043","type":"journal-article","created":{"date-parts":[[2020,4,24]],"date-time":"2020-04-24T11:42:14Z","timestamp":1587728534000},"page":"43","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Guidelines for a Standardized Filesystem Layout for Scientific Data"],"prefix":"10.3390","volume":"5","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6856-2910","authenticated-orcid":false,"given":"Florian","family":"Spreckelsen","sequence":"first","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3857-7767","authenticated-orcid":false,"given":"Baltasar","family":"R\u00fcchardt","sequence":"additional","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8754-4964","authenticated-orcid":false,"given":"Jan","family":"Lebert","sequence":"additional","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"},{"name":"Department of Cardiology and Pneumology, University Medical Center G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7214-8125","authenticated-orcid":false,"given":"Stefan","family":"Luther","sequence":"additional","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"},{"name":"Institute of Pharmacology and Toxicology, University Medical Center G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3058-1435","authenticated-orcid":false,"given":"Ulrich","family":"Parlitz","sequence":"additional","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4124-9649","authenticated-orcid":false,"given":"Alexander","family":"Schlemmer","sequence":"additional","affiliation":[{"name":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"},{"name":"German Center for Cardiovascular Research (DZHK), partner site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1968","published-online":{"date-parts":[[2020,4,24]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/sdata.2016.44","article-title":"The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments","volume":"3","author":"Gorgolewski","year":"2016","journal-title":"Sci. Data"},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1038\/ng.1054","article-title":"Toward interoperable bioscience data","volume":"44","author":"Sansone","year":"2012","journal-title":"Nat. Genet."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1038\/nclimate2141","article-title":"Capturing provenance of global change information","volume":"4","author":"Ma","year":"2014","journal-title":"Nat. Clima. Chang."},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"1201","DOI":"10.1016\/S0098-3004(02)00039-0","article-title":"PANGAEA\u2014An information system for environmental sciences","volume":"28","author":"Diepenbroek","year":"2002","journal-title":"Comput. Geosci."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"160018","DOI":"10.1038\/sdata.2016.18","article-title":"The FAIR Guiding Principles for scientific data management and stewardship","volume":"3","author":"Wilkinson","year":"2016","journal-title":"Sci. Data"},{"key":"ref_6","first-page":"44","article-title":"An overview of Pandoc","volume":"35","author":"Dominici","year":"2014","journal-title":"TUGboat"},{"key":"ref_7","unstructured":"Ben-Kiki, O., Evans, C., and d\u00f6t Net, I. (2020, April 23). Available online: https:\/\/yaml.org\/spec\/1.2\/spec.html."},{"key":"ref_8","doi-asserted-by":"crossref","unstructured":"Fitschen, T., Schlemmer, A., Hornung, D., tom W\u00f6rden, H., Parlitz, U., and Luther, S. (2019). CaosDB\u2014Research Data Management for Complex, Changing, and Automated Research Workflows. Data, 4.","DOI":"10.3390\/data4020083"}],"container-title":["Data"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2306-5729\/5\/2\/43\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,13]],"date-time":"2025-10-13T13:45:28Z","timestamp":1760363128000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2306-5729\/5\/2\/43"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,4,24]]},"references-count":8,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2020,6]]}},"alternative-id":["data5020043"],"URL":"https:\/\/doi.org\/10.3390\/data5020043","relation":{"has-preprint":[{"id-type":"doi","id":"10.20944\/preprints202004.0035.v1","asserted-by":"object"}]},"ISSN":["2306-5729"],"issn-type":[{"value":"2306-5729","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,4,24]]}}}