{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,30]],"date-time":"2026-05-30T01:16:24Z","timestamp":1780103784135,"version":"3.54.0"},"reference-count":63,"publisher":"MDPI AG","issue":"3","license":[{"start":{"date-parts":[[2025,1,27]],"date-time":"2025-01-27T00:00:00Z","timestamp":1737936000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"National Key R&amp;D Program of China","award":["2024YFF1001400"],"award-info":[{"award-number":["2024YFF1001400"]}]},{"name":"National Key R&amp;D Program of China","award":["[2022]097"],"award-info":[{"award-number":["[2022]097"]}]},{"name":"National Key R&amp;D Program of China","award":["[2022]099"],"award-info":[{"award-number":["[2022]099"]}]},{"name":"National Key R&amp;D Program of China","award":["[2023]004)"],"award-info":[{"award-number":["[2023]004)"]}]},{"name":"National Key R&amp;D Program of China","award":["CARS-40"],"award-info":[{"award-number":["CARS-40"]}]},{"name":"Guizhou Provincial Key Technology R&amp;D Program","award":["2024YFF1001400"],"award-info":[{"award-number":["2024YFF1001400"]}]},{"name":"Guizhou Provincial Key Technology R&amp;D Program","award":["[2022]097"],"award-info":[{"award-number":["[2022]097"]}]},{"name":"Guizhou Provincial Key Technology R&amp;D Program","award":["[2022]099"],"award-info":[{"award-number":["[2022]099"]}]},{"name":"Guizhou Provincial Key Technology R&amp;D Program","award":["[2023]004)"],"award-info":[{"award-number":["[2023]004)"]}]},{"name":"Guizhou Provincial Key Technology R&amp;D Program","award":["CARS-40"],"award-info":[{"award-number":["CARS-40"]}]},{"name":"China Agriculture Research System","award":["2024YFF1001400"],"award-info":[{"award-number":["2024YFF1001400"]}]},{"name":"China Agriculture Research System","award":["[2022]097"],"award-info":[{"award-number":["[2022]097"]}]},{"name":"China Agriculture Research System","award":["[2022]099"],"award-info":[{"award-number":["[2022]099"]}]},{"name":"China Agriculture Research System","award":["[2023]004)"],"award-info":[{"award-number":["[2023]004)"]}]},{"name":"China Agriculture Research System","award":["CARS-40"],"award-info":[{"award-number":["CARS-40"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Animals"],"abstract":"<jats:p>Puan Panjiang black-bone chickens are renowned for their distinctive traits, deep black coloration, and high-quality protein content, making them a focus of genetic research due to their unique egg-laying abilities. In this study, 110 Puan Panjiang black-bone chickens were used to investigate the effects of natural and artificial selection influencing egg production. Whole-genome resequencing data from red junglefowl (RJF) and high-egg-production (HEP) and low-egg-production (LEP) groups of Puan Panjiang black-bone chickens revealed significant genetic variants associated with egg production traits. Additionally, transcriptome analysis of 47 samples from ovary stroma, small white follicles (SWFs), small yellow follicles (SYFs), and liver tissues from 6 HEP and 6 LEP groups identified differentially expressed genes. Notably, differences in egg production were linked to small yellow follicles rather than ovary stroma or SWFs. Key candidate genes, including TRIM7, CASR, SPTBN5, GAL1, ZP1, IL4I1, and CCL19, were identified as potential contributors to egg-laying performance. This study underscores the genetic diversity within this breed and provides valuable insights for future breeding programs to enhance egg production, supporting the sustainable development of this local resource.<\/jats:p>","DOI":"10.3390\/ani15030363","type":"journal-article","created":{"date-parts":[[2025,1,27]],"date-time":"2025-01-27T07:46:29Z","timestamp":1737963989000},"page":"363","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Genomically Selected Genes Associated with a High Rate of Egg Production in Puan Panjiang Black-Bone Chickens"],"prefix":"10.3390","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9551-7536","authenticated-orcid":false,"given":"Xiaomeng","family":"Miao","sequence":"first","affiliation":[{"name":"National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China"},{"name":"Institute of Animal Husbandry and Veterinary Medicine, Guizhou Academy of Agricultural Sciences, Guiyang 550005, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhiying","family":"Huang","sequence":"additional","affiliation":[{"name":"College of Animal Science, Shanxi Agricultural University, Taiyuan 030801, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jia","family":"Liu","sequence":"additional","affiliation":[{"name":"Guizhou Province Livestock and Poultry Genetic Resources Management Station, Guizhou Provincial Department of Agriculture and Rural Affairs, Guiyang 550001, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Zhang","sequence":"additional","affiliation":[{"name":"Guizhou Province Livestock and Poultry Genetic Resources Management Station, Guizhou Provincial Department of Agriculture and Rural Affairs, Guiyang 550001, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8293-6942","authenticated-orcid":false,"given":"Yulong","family":"Feng","sequence":"additional","affiliation":[{"name":"Institute of Animal Husbandry and Veterinary Medicine, Guizhou Academy of Agricultural Sciences, Guiyang 550005, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yalan","family":"Zhang","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Diyan","family":"Li","sequence":"additional","affiliation":[{"name":"School of Pharmacy, Chengdu University, Chengdu 610106, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhonghua","family":"Ning","sequence":"additional","affiliation":[{"name":"National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2025,1,27]]},"reference":[{"key":"ref_1","first-page":"52","article-title":"Quantity and development status of black-bone chicken breed resources in Pu\u2019an County","volume":"12","author":"Wu","year":"2023","journal-title":"Contemp. 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