{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T11:38:34Z","timestamp":1791286714319,"version":"4.1.0"},"reference-count":95,"publisher":"MDPI AG","issue":"6","license":[{"start":{"date-parts":[[2022,5,31]],"date-time":"2022-05-31T00:00:00Z","timestamp":1653955200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001665","name":"ANR \u2018CERBERUS\u2019","doi-asserted-by":"publisher","award":["ANR-17-CE02-0003"],"award-info":[{"award-number":["ANR-17-CE02-0003"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"name":"French Oceanographic Fleet program","award":["ANR-17-CE02-0003"],"award-info":[{"award-number":["ANR-17-CE02-0003"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"<jats:p>Deep hydrothermal vents are highly fragmented and unstable habitats at all temporal and spatial scales. Such environmental dynamics likely play a non-negligible role in speciation. Little is, however, known about the evolutionary processes that drive population-level differentiation and vent species isolation and, more specifically, how geography and habitat specialisation interplay in the species history of divergence. In this study, the species range and divergence of Alviniconcha snails that occupy active Western Pacific vent fields was assessed by using sequence variation data of the mitochondrial Cox1 gene, RNAseq, and ddRAD-seq. Combining morphological description and sequence datasets of the three species across five basins, we confirmed that A. kojimai, A. boucheti, and A. strummeri, while partially overlapping over their range, display high levels of divergence in the three genomic compartments analysed that usually encompass values retrieved for reproductively isolated species with divergences rang from 9% to 12.5% (mtDNA) and from 2% to 3.1% (nuDNA). Moreover, the three species can be distinguished on the basis of their external morphology by observing the distribution of bristles and the shape of the columella. According to this sampling, A. boucheti and A. kojimai form an east-to-west species abundance gradient, whereas A. strummeri is restricted to the Futuna Arc\/Lau and North Fiji Basins. Surprisingly, population models with both gene flow and population size heterogeneities among genomes indicated that these three species are still able to exchange genes due to secondary contacts at some localities after a long period of isolation.<\/jats:p>","DOI":"10.3390\/genes13060985","type":"journal-article","created":{"date-parts":[[2022,5,31]],"date-time":"2022-05-31T02:30:06Z","timestamp":1653964206000},"page":"985","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha"],"prefix":"10.3390","volume":"13","author":[{"given":"Jade","family":"Castel","sequence":"first","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phane","family":"Hourdez","sequence":"additional","affiliation":[{"name":"Laboratoire d\u2019Ecog\u00e9ochimie des Environnements Benthiques, Observatoire Oc\u00e9anologique de Banyuls, Sorbonne Universit\u00e9, CNRS, UMR 8222, Avenue Pierre Fabre, 66650 Banyuls-sur-Mer, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6473-6290","authenticated-orcid":false,"given":"Florence","family":"Pradillon","sequence":"additional","affiliation":[{"name":"Unit\u00e9 Biologie et Ecologie des Ecosyst\u00e8mes Marins Profonds, Universit\u00e9 de Brest, Ifremer, CNRS, 29280 Plouzan\u00e9, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4665-6411","authenticated-orcid":false,"given":"Claire","family":"Daguin-Thi\u00e9baut","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marion","family":"Ballenghien","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phanie","family":"Ruault","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erwan","family":"Corre","sequence":"additional","affiliation":[{"name":"ABiMS Bioinformatics Facility, Station biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, FR2424, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adrien","family":"Tran Lu Y","sequence":"additional","affiliation":[{"name":"Team MBE, Department Gen\u03c6, ISEM, Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, 34110 Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean","family":"Mary","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1908-3235","authenticated-orcid":false,"given":"Pierre-Alexandre","family":"Gagnaire","sequence":"additional","affiliation":[{"name":"Team MBE, Department Gen\u03c6, ISEM, Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, 34110 Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8792-9239","authenticated-orcid":false,"given":"Fran\u00e7ois","family":"Bonhomme","sequence":"additional","affiliation":[{"name":"Team MBE, Department Gen\u03c6, ISEM, Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, 34110 Montpellier, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6845-0188","authenticated-orcid":false,"given":"Corinna","family":"Breusing","sequence":"additional","affiliation":[{"name":"Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Rd, Narragansett, RI 02882, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2986-2822","authenticated-orcid":false,"given":"Thomas","family":"Broquet","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8042-1857","authenticated-orcid":false,"given":"Didier","family":"Jollivet","sequence":"additional","affiliation":[{"name":"\u2018Dynamique de la Diversit\u00e9 Marine\u2019 (DyDiv) Lab, Station Biologique de Roscoff, Sorbonne Universit\u00e9, CNRS, UMR 7144, Place G. Teissier, 29680 Roscoff, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2022,5,31]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1016\/0146-6291(77)90478-7","article-title":"Clustering of suspension-feeding macrobenthos near abyssal hydrothermal vents at oceanic spreading centers","volume":"24","author":"Lonsdale","year":"1977","journal-title":"Deep Sea Res."},{"key":"ref_2","first-page":"319","article-title":"The biology of hydrothermal vents: Ecology and evolution","volume":"29","author":"Tunnicliffe","year":"1991","journal-title":"Ocean. Mar. Biol. Annu. Rev."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1093\/sysbio\/syr088","article-title":"Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities","volume":"61","author":"Moalic","year":"2012","journal-title":"Syst. 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