{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,4]],"date-time":"2026-09-04T05:19:41Z","timestamp":1788499181504,"version":"build-2803163510"},"reference-count":77,"publisher":"MDPI AG","issue":"6","license":[{"start":{"date-parts":[[2022,3,15]],"date-time":"2022-03-15T00:00:00Z","timestamp":1647302400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000199","name":"United States Department of Agriculture","doi-asserted-by":"publisher","award":["2020-51181-32135"],"award-info":[{"award-number":["2020-51181-32135"]}],"id":[{"id":"10.13039\/100000199","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005888","name":"Horticultural Research Institute","doi-asserted-by":"publisher","award":["2019-12584763"],"award-info":[{"award-number":["2019-12584763"]}],"id":[{"id":"10.13039\/100005888","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IJMS"],"abstract":"<jats:p>Burkholderia sp. SSG is a potent biological control agent. Even though its survival on the leaf surface declined rapidly, SSG provided extended, moderate plant protection from a broad spectrum of pathogens. This study used Arabidopsis Col-0 and its mutants, eds16-1, npr1-1, and pad4-1 as model plants and compared treated plants with non-treated controls to elucidate whether SSG triggers plant defense priming. Only eds16-1 leaves with SSG became purplish, suggesting the involvement of salicylic acid (SA) in SSG-induced priming. cDNA sequencing of Col-0 plants and differential gene expression analysis identified 120 and 119 differentially expressed genes (DEGs) at 6- and 24-h post-treatment (hpt) with SSG, respectively. Most of these DEGs encoded responses to biotic and abiotic stimuli or stresses; four DEGs had more than two isoforms. A total of 23 DEGs were shared at 6 and 24 hpt, showing four regulation patterns. Functional categorization of these shared DEGs, and 44 very significantly upregulated DEGs revealed that SSG triggered various defense priming mechanisms, including responses to phosphate or iron deficiency, modulation of defense-linked SA, jasmonic acid, ethylene, and abscisic acid pathways, defense-related gene regulation, and chromatin modification. These data support that SSG is an induced systemic resistance (ISR) trigger conferring plant protection upon pathogen encounter.<\/jats:p>","DOI":"10.3390\/ijms23063151","type":"journal-article","created":{"date-parts":[[2022,3,16]],"date-time":"2022-03-16T03:34:13Z","timestamp":1647401653000},"page":"3151","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["cDNA Transcriptome of Arabidopsis Reveals Various Defense Priming Induced by a Broad-Spectrum Biocontrol Agent Burkholderia sp. SSG"],"prefix":"10.3390","volume":"23","author":[{"given":"Ping","family":"Kong","sequence":"first","affiliation":[{"name":"Virginia Tech, Hampton Roads Agricultural Research and Extension Center, 1444 Diamond Springs Road, Virginia Beach, VA 23455, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1288-6438","authenticated-orcid":false,"given":"Xiaoping","family":"Li","sequence":"additional","affiliation":[{"name":"Virginia Tech, Hampton Roads Agricultural Research and Extension Center, 1444 Diamond Springs Road, Virginia Beach, VA 23455, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8781-8689","authenticated-orcid":false,"given":"Fred","family":"Gouker","sequence":"additional","affiliation":[{"name":"United States Department of Agriculture, Agricultural Research Service, Floral and Nursery Plants Research, Beltsville, MD 20705, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chuanxue","family":"Hong","sequence":"additional","affiliation":[{"name":"Virginia Tech, Hampton Roads Agricultural Research and Extension Center, 1444 Diamond Springs Road, Virginia Beach, VA 23455, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2022,3,15]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1038\/s41559-018-0793-y","article-title":"The global burden of pathogens and pests on major food crops","volume":"3","author":"Savary","year":"2019","journal-title":"Nat. Ecol. Evol."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1146\/annurev.phyto.43.113004.133839","article-title":"Plant disease: A threat to global food security","volume":"43","author":"Strange","year":"2005","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1584\/jpestics.D19-101","article-title":"Global trends in the crop protection industry","volume":"44","author":"Nishimoto","year":"2019","journal-title":"J. Pestic. Sci."},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s13313-017-0481-4","article-title":"Biological control of plant diseases","volume":"46","year":"2017","journal-title":"Australas. Plant Pathol."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.3389\/fmicb.2020.01619","article-title":"Modes of action of microbial biocontrol in the phyllosphere","volume":"11","author":"Legein","year":"2020","journal-title":"Front. Microbiol."},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1146\/annurev-phyto-082712-102340","article-title":"Induced systemic resistance by beneficial microbes","volume":"52","author":"Pieterse","year":"2014","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1146\/annurev-phyto-080614-120132","article-title":"Priming for enhanced defense","volume":"53","author":"Conrath","year":"2015","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_8","first-page":"100054","article-title":"Efficiency of microbial bio-agents as elicitors in plant defense mechanism under biotic stress: A review","volume":"2","author":"Zehra","year":"2021","journal-title":"CRMICR"},{"key":"ref_9","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1038\/nature05286","article-title":"The plant immune system","volume":"444","author":"Jones","year":"2006","journal-title":"Nature"},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1111\/tpj.13808","article-title":"Pattern recognition receptors and signaling in plant\u2013microbe interactions","volume":"93","author":"Saijo","year":"2018","journal-title":"Plant J."},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"2223","DOI":"10.3389\/fimmu.2018.02223","article-title":"Receptors and signaling pathways for recognition of bacteria in livestock and crops: Prospects for beneficial microbes in healthy growth strategies","volume":"9","author":"Villena","year":"2018","journal-title":"Front. Immunol."},{"key":"ref_12","first-page":"1675","article-title":"Elicitors of plant immunity triggered by beneficial bacteria","volume":"11","author":"Ongena","year":"2020","journal-title":"Front. Plant Sci."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1016\/j.tplants.2013.04.004","article-title":"Tell me more: Roles of NPRs in plant immunity","volume":"18","author":"Emerine","year":"2013","journal-title":"Trends Plant Sci."},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"114","DOI":"10.3389\/fpls.2018.00114","article-title":"Ethylene and 1-Aminocyclopropane-1-carboxylate (ACC) in Plant\u2013bacterial interactions","volume":"9","author":"Nascimento","year":"2018","journal-title":"Front. Plant Sci."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"596","DOI":"10.1104\/pp.111.175372","article-title":"Cell wall integrity controls root longation via a general 1-aminocyclopropane-1-carboxylic acid-dependent, ethylene-independent pathway","volume":"156","author":"Tsang","year":"2011","journal-title":"Plant Physiol."},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1134\/S0003683812030052","article-title":"The involvement of Pseudomonas bacteria in induced systemic resistance in plants (Review)","volume":"48","author":"Jankiewicz","year":"2012","journal-title":"Appl. Biochem. Microbiol."},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.biocontrol.2013.01.009","article-title":"Induced systemic resistance in cucumber and Arabidopsis thaliana by the combination of Trichoderma harzianum Tr6 and Pseudomonas sp. Ps14","volume":"65","author":"Alizadeh","year":"2013","journal-title":"Biol. Control"},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1111\/nph.14036","article-title":"The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health","volume":"212","author":"Vogel","year":"2016","journal-title":"New Phytol."},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"2173","DOI":"10.1104\/pp.112.207324","article-title":"Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101","volume":"160","author":"Dekkers","year":"2012","journal-title":"Plant Physiol."},{"key":"ref_20","doi-asserted-by":"crossref","first-page":"238","DOI":"10.3389\/fpls.2017.00238","article-title":"Induced systemic resistance against botrytis cinerea by Bacillus cereus AR156 through a JA\/ET- and NPR1-dependent signaling pathway and activates PAMP-triggered immunity in Arabidopsis","volume":"8","author":"Nie","year":"2017","journal-title":"Front. Plant Sci."},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"587","DOI":"10.3389\/fpls.2017.00587","article-title":"Abscisic acid as pathogen effector and immune regulator","volume":"8","author":"Lievens","year":"2017","journal-title":"Front. Plant Sci."},{"key":"ref_22","doi-asserted-by":"crossref","unstructured":"Schulz, B.J.E., Boyle, C.J.C., and Sieber, T.N. (2006). Bacterial endophytes as elicitors of induced systemic resistance. Microbial Root Endophytes, Springer.","DOI":"10.1007\/3-540-33526-9"},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"5215","DOI":"10.1007\/s00253-016-7520-x","article-title":"Burkholderia: An update on taxonomy and biotechnological potential as antibiotic producers","volume":"100","author":"Depoorter","year":"2016","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1007\/s00248-011-9929-1","article-title":"Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia","volume":"63","author":"Coutinho","year":"2012","journal-title":"Microb. Ecol."},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1146\/annurev.phyto.39.1.225","article-title":"Diversity of the Burkholderia cepacia complex and implications for risk assessment of biological control strains","volume":"39","author":"Parke","year":"2001","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"104380","DOI":"10.1016\/j.biocontrol.2020.104380","article-title":"Burkholderia sp. SSG is a broad-spectrum antagonist against plant diseases caused by diverse pathogens","volume":"151","author":"Kong","year":"2020","journal-title":"Biol. Control"},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"e9547","DOI":"10.7717\/peerj.9547","article-title":"Endophytic Burkholderia sp. SSG as a potential biofertilizer promoting boxwood growth","volume":"8","author":"Kong","year":"2020","journal-title":"PeerJ"},{"key":"ref_28","doi-asserted-by":"crossref","unstructured":"Kong, P., and Hong, C. (2020). A potent Burkholderia endophyte against boxwood blight caused by Calonectria pseudonaviculata. Microorganisms, 8.","DOI":"10.3390\/microorganisms8020310"},{"key":"ref_29","doi-asserted-by":"crossref","first-page":"138","DOI":"10.24266\/0738-2898-39.4.138","article-title":"Survival of SSG, an endophytic Burkholderia biocontrol agent, on the boxwood leaf surface","volume":"39","author":"Kong","year":"2021","journal-title":"J. Environ. Hortic."},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"e00455","DOI":"10.1016\/j.btre.2020.e00455","article-title":"Complete genome sequence of a boxwood endophyte Burkholderia sp. SSG with broad biotechnological application potential","volume":"26","author":"Kong","year":"2020","journal-title":"Biotechnol. Rep."},{"key":"ref_31","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.1111\/j.1469-8137.2012.04113.x","article-title":"Biological control of bacterial wilt in Arabidopsis thaliana involves abscissic acid signalling","volume":"194","author":"Feng","year":"2012","journal-title":"New Phytol."},{"key":"ref_32","doi-asserted-by":"crossref","unstructured":"Duke, K.A., Becker, M.G., Girard, I.J., Millar, J.L., Dilantha Fernando, W.G., Belmonte, M.F., and de Kievit, T.R. (2017). The biocontrol agent Pseudomonas chlororaphis PA23 primes Brassica napus defenses through distinct gene networks. BMC Genom., 18.","DOI":"10.1186\/s12864-017-3848-6"},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"pdb.top084970","DOI":"10.1101\/pdb.top084970","article-title":"RNA Sequencing and Analysis","volume":"11","author":"Kukurba","year":"2015","journal-title":"Cold Spring Harb. Protoc."},{"key":"ref_34","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1007\/s11104-014-2252-0","article-title":"Sugarcane performance under phosphorus deficiency: Physiological responses and genotypic variation","volume":"386","author":"Zambrosi","year":"2015","journal-title":"Plant Soil"},{"key":"ref_35","first-page":"85","article-title":"The effects of phosphorus, glucose and cytokinin on SEN1 gene expression in Arabidopsis","volume":"31","author":"Yu","year":"2005","journal-title":"J. Plant Physiol. Mol. Biol."},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"2408","DOI":"10.1105\/tpc.015412","article-title":"ACD6, a novel ankyrin protein, is a regulator and an effector of salicylic acid signaling in the Arabidopsis defense response","volume":"15","author":"Lu","year":"2003","journal-title":"Plant Cell"},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"1695","DOI":"10.1105\/tpc.11.9.1695","article-title":"The gain-of-function Arabidopsis acd6 mutant reveals novel regulation and function of the salicylic acid signaling pathway in controlling cell death, defenses, and cell growth","volume":"11","author":"Rate","year":"1999","journal-title":"Plant Cell"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"e1010912","DOI":"10.1080\/15592324.2015.1010912","article-title":"Linking pattern recognition and salicylic acid responses in Arabidopsis through ACCELERATED CELL DEATH6 and receptors","volume":"10","author":"Tateda","year":"2015","journal-title":"Plant Signal. Behav."},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1038\/nature09083","article-title":"Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana","volume":"465","author":"Todesco","year":"2010","journal-title":"Nature"},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"777","DOI":"10.3389\/fpls.2014.00777","article-title":"Identification of multiple salicylic acid-binding proteins using two high throughput screens","volume":"5","author":"Manohar","year":"2015","journal-title":"Front. Plant Sci."},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1111\/j.1365-313X.2011.04578.x","article-title":"Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum","volume":"67","author":"Stotz","year":"2011","journal-title":"Plant J."},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1016\/j.plaphy.2005.09.002","article-title":"The SEN1 gene of Arabidopsis is regulated by signals that link plant defence responses and senescence","volume":"43","author":"Schenk","year":"2005","journal-title":"Plant Physiol. Biochem."},{"key":"ref_43","first-page":"205","article-title":"Three unique mutants of Arabidopsis identify eds loci required for limiting growth of a biotrophic fungal pathogen","volume":"24","author":"Dewdney","year":"2000","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1038\/35107108","article-title":"Isochorismate synthase is required to synthesize salicylic acid for plant defence","volume":"414","author":"Wildermuth","year":"2001","journal-title":"Nature"},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"10306","DOI":"10.1073\/pnas.95.17.10306","article-title":"Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis","volume":"95","author":"Aarts","year":"1998","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"796","DOI":"10.3389\/fpls.2015.00796","article-title":"Ethylene and plant responses to phosphate deficiency","volume":"6","author":"Song","year":"2015","journal-title":"Front. Plant Sci."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"2621","DOI":"10.1104\/pp.104.046367","article-title":"GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox","volume":"136","author":"Zimmermann","year":"2004","journal-title":"Plant Physiol."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1111\/mpp.12257","article-title":"Activation of senescence-associated Dark-inducible (DIN) genes during infection contributes to enhanced susceptibility to plant viruses","volume":"17","author":"Donaire","year":"2016","journal-title":"Mol. Plant Pathol."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1111\/nph.12971","article-title":"To grow or defend? Low red: Far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability","volume":"204","author":"Leone","year":"2014","journal-title":"New Phytol."},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1111\/nph.13029","article-title":"Different shades of JAZ during plant growth and defense","volume":"204","author":"Pieterse","year":"2014","journal-title":"New Phytol."},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1104\/pp.16.00278","article-title":"Phosphate deficiency induces the jasmonate pathway and enhances resistance to insect herbivory","volume":"171","author":"Khan","year":"2016","journal-title":"Plant Physiol."},{"key":"ref_52","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1007\/s00425-009-1091-3","article-title":"Precocious pollen germination in Arabidopsis plants with altered callose deposition during microsporogenesis","volume":"231","author":"Xie","year":"2010","journal-title":"Planta"},{"key":"ref_53","doi-asserted-by":"crossref","first-page":"15251","DOI":"10.3390\/ijms160715251","article-title":"Function of ABA in stomatal defense against biotic and drought stresses","volume":"16","author":"Lim","year":"2015","journal-title":"Int. J. Mol. Sci"},{"key":"ref_54","doi-asserted-by":"crossref","first-page":"539","DOI":"10.3389\/fpls.2013.00539","article-title":"Onset of herbivore-induced resistance in systemic tissue primed for jasmonate-dependent defenses is activated by abscisic acid","volume":"4","author":"Vos","year":"2013","journal-title":"Front. Plant Sci."},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1094\/MPMI-21-2-0208","article-title":"Endophytic actinobacteria induce defense pathways in Arabidopsis thaliana","volume":"21","author":"Conn","year":"2008","journal-title":"Mol. Plant. Microbe Interact."},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"287","DOI":"10.3389\/fpls.2019.00287","article-title":"Induced systemic resistance (isr) and Fe deficiency responses in dicot plants","volume":"10","author":"Romera","year":"2019","journal-title":"Front. Plant Sci."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"643585","DOI":"10.3389\/fpls.2021.643585","article-title":"Influence of ethylene signaling in the crosstalk between Fe, S, and P deficiency responses in Arabidopsis thaliana","volume":"12","author":"Angulo","year":"2021","journal-title":"Front. Plant Sci."},{"key":"ref_58","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1016\/j.tplants.2014.11.004","article-title":"Molecular mechanisms governing Arabidopsis iron uptake","volume":"20","author":"Brumbarova","year":"2015","journal-title":"Trends Plant Sci."},{"key":"ref_59","doi-asserted-by":"crossref","first-page":"914","DOI":"10.1111\/j.1365-313X.2007.03286.x","article-title":"Plant SET- and RING-associated domain proteins in heterochromatinization","volume":"52","author":"Liu","year":"2007","journal-title":"Plant J."},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1016\/j.plantsci.2007.09.002","article-title":"Stressful \u201cmemories\u201d of plants: Evidence and possible mechanisms","volume":"173","author":"Bruce","year":"2007","journal-title":"Plant Sci."},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1038\/embor.2010.186","article-title":"Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response","volume":"12","author":"Jaskiewicz","year":"2011","journal-title":"EMBO Rep."},{"key":"ref_62","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1016\/j.envexpbot.2012.02.013","article-title":"Primed plants do not forget","volume":"94","author":"Pastor","year":"2013","journal-title":"Environ. Exp. Bot."},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1016\/S1534-5807(02)00229-0","article-title":"A Calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis","volume":"3","author":"Guo","year":"2002","journal-title":"Dev. Cell"},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"3019","DOI":"10.1105\/tpc.107.050666","article-title":"Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis","volume":"19","author":"Zhu","year":"2007","journal-title":"Plant Cell"},{"key":"ref_65","first-page":"192","article-title":"Plant defensins: Types, mechanism of action and prospects of genetic engineering for enhanced disease resistance in plants","volume":"9","author":"Iqbal","year":"2019","journal-title":"3 Biotech"},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"600","DOI":"10.1104\/pp.105.060079","article-title":"Genome organization of more than 300 defensin-like genes in Arabidopsis","volume":"138","author":"Silverstein","year":"2005","journal-title":"Plant Physiol."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"4677","DOI":"10.1002\/j.1460-2075.1992.tb05572.x","article-title":"Rapid activation of a novel plant defense gene is strictly dependent on the Arabidopsis RPM1 disease resistance locus","volume":"11","author":"Kiedrowski","year":"1992","journal-title":"EMBO J."},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"70","DOI":"10.3389\/fenvs.2014.00070","article-title":"Oxidative environment and redox homeostasis in plants: Dissecting out significant contribution of major cellular organelles","volume":"2","author":"Das","year":"2015","journal-title":"Front. Environ. Sci."},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"1247","DOI":"10.1094\/MPMI-18-1247","article-title":"Nematode-induced changes of transporter gene expression in Arabidopsis roots","volume":"18","author":"Hammes","year":"2005","journal-title":"Mol. Plant. Microbe Interact."},{"key":"ref_70","doi-asserted-by":"crossref","first-page":"1193","DOI":"10.1111\/tpj.15507","article-title":"Multi-omics network-based functional annotation of unknown Arabidopsis genes","volume":"108","author":"Depuydt","year":"2021","journal-title":"Plant J."},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1104\/pp.108.130732","article-title":"The genetic basis of constitutive and herbivore-Induced ESP-independent nitrile formation in Arabidopsis","volume":"149","author":"Burow","year":"2009","journal-title":"Plant Physiol."},{"key":"ref_72","doi-asserted-by":"crossref","unstructured":"Kong, P., McDowell, J.M., and Hong, C. (2017). Zoospore exudates from Phytophthora nicotianae affect immune responses in Arabidopsis. PLoS ONE, 12.","DOI":"10.1371\/journal.pone.0180523"},{"key":"ref_73","doi-asserted-by":"crossref","first-page":"39","DOI":"10.24266\/0738-2898-37.2.39","article-title":"Evaluation of a novel endophytic Pseudomonas lactis strain for control of boxwood blight","volume":"37","author":"Kong","year":"2019","journal-title":"J. Environ. Hortic"},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"5061","DOI":"10.1093\/nar\/gkx267","article-title":"A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing","volume":"45","author":"Zhang","year":"2017","journal-title":"Nucleic Acids Res"},{"key":"ref_75","doi-asserted-by":"crossref","first-page":"W98","DOI":"10.1093\/nar\/gkt281","article-title":"PlantGSEA: A gene set enrichment analysis toolkit for plant community","volume":"41","author":"Yi","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"ref_76","unstructured":"Kolde, R. (2019). Pheatmap: Pretty Heatmaps, R Package Vignette. R package version 1.0.12."},{"key":"ref_77","doi-asserted-by":"crossref","unstructured":"Supek, F., Bo\u0161njak, M., \u0160kunca, N., and \u0160muc, T. (2011). REVIGO Summarizes and visualizes long lists of gene ontology terms. 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