{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,24]],"date-time":"2026-08-24T14:20:26Z","timestamp":1787581226097,"version":"build-2736575974"},"reference-count":44,"publisher":"MDPI AG","issue":"17","license":[{"start":{"date-parts":[[2026,8,24]],"date-time":"2026-08-24T00:00:00Z","timestamp":1787529600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Ministry of Science and Higher Education of the Republic of Kazakhstan","award":["BR28712539"],"award-info":[{"award-number":["BR28712539"]}]},{"award":["BR28712539"],"award-info":[{"award-number":["BR28712539"]}],"id":[{"id":"https:\/\/ror.org\/05tyne317","id-type":"ROR","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Int. J. Mol. Sci.","IJMS"],"abstract":"<jats:p>Genetic variation in four wild Prunus taxa (P. fruticosa, P. erythrocarpa, P. verrucosa and P. griffithii var. tianshanica) was investigated for the first time using six chloroplast DNA regions (matK, r rpl16, ycf1_1, ycf1_2, ndhF and trnH\u2013psbA) analysed through CAPS-based SNP detection. The results revealed weak chloroplast differentiation among P. erythrocarpa, P. verrucosa and P. griffithii var. tianshanica. However, chloroplast variation exhibited a strong geographic signal across the studied populations. The observed chloroplast variation primarily reflected geographic structuring rather than clear differentiation among these closely related taxa. In contrast, P. fruticosa showed distinct chloroplast haplotypes not shared with the other taxa. These findings demonstrate that the developed chloroplast CAPS marker system is effective for detecting chloroplast haplotype variation but has limited discriminatory power among closely related wild Prunus taxa. Further studies using nuclear markers and genome-wide approaches will be required to better resolve their genetic relationships and evolutionary history.<\/jats:p>","DOI":"10.3390\/ijms27177566","type":"journal-article","created":{"date-parts":[[2026,8,24]],"date-time":"2026-08-24T13:20:43Z","timestamp":1787577643000},"page":"7566","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Chloroplast Haplotype Analysis Reveals High Genetic Similarity Among Central Asian Prunus Species"],"prefix":"10.3390","volume":"27","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5841-659X","authenticated-orcid":false,"given":"Ulzhan","family":"Manapkanova","sequence":"first","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, 45 Timiryazev Str., 050040 Almaty, Kazakhstan"},{"name":"Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, 71 Al-Farabi Av., 050040 Almaty, Kazakhstan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5565-5827","authenticated-orcid":false,"given":"Nazgul","family":"Rymkhanova","sequence":"additional","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, 45 Timiryazev Str., 050040 Almaty, Kazakhstan"},{"name":"Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, 71 Al-Farabi Av., 050040 Almaty, Kazakhstan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5901-6328","authenticated-orcid":false,"given":"Stefanie","family":"Reim","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn-Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Fruit Crops, 3a Pillnitzer Platz, 01326 Dresden, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Fritzsche","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn-Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Fruit Crops, 3a Pillnitzer Platz, 01326 Dresden, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1440-1895","authenticated-orcid":false,"given":"Henryk","family":"Flachowsky","sequence":"additional","affiliation":[{"name":"Julius K\u00fchn-Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Fruit Crops, 3a Pillnitzer Platz, 01326 Dresden, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1926-0091","authenticated-orcid":false,"given":"Svetlana V.","family":"Kushnarenko","sequence":"additional","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, 45 Timiryazev Str., 050040 Almaty, Kazakhstan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,8,24]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"670","DOI":"10.21273\/JASHS.132.5.670","article-title":"Chloroplast DNA diversity in Prunus and its implication on genetic relationships","volume":"132","author":"Bouhadida","year":"2007","journal-title":"J. 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