{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T10:03:30Z","timestamp":1790244210934,"version":"4.1.0"},"reference-count":27,"publisher":"MDPI AG","issue":"19","license":[{"start":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T00:00:00Z","timestamp":1790208000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100008494","name":"Vontobel Foundation","doi-asserted-by":"publisher","award":["0267\/2023"],"award-info":[{"award-number":["0267\/2023"]}],"id":[{"id":"10.13039\/501100008494","id-type":"DOI","asserted-by":"publisher"}]},{"name":"University Hospital Bern"},{"id":[{"id":"https:\/\/ror.org\/00qq1fp34","id-type":"ROR","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Int. J. Mol. Sci.","IJMS"],"abstract":"<jats:p>ANCA-associated small vessel vasculitis (AAV) and giant cell arteritis (GCA) are two clinically distinct forms of vasculitides with a high risk of relapse. We aimed to evaluate and compare the role of immune cells in patients with both vasculitis subtypes with active disease. Whole blood was collected from 12 untreated newly diagnosed or relapsing patients with AAV, 10 untreated newly diagnosed patients with GCA, and 11 age- and sex-matched healthy controls (HC). Transcriptomes were analysed by RNA sequencing. Differentially expressed genes (DEG) were calculated across disease groups. Pathway enrichment analysis was conducted using Overrepresentation Analysis (ORA), and Gene Onthology and Gene Set Enrichment Analysis (GSEA). The platelet receptor component CD42a was assessed by flow cytometry. We identified 104 DEG in AAV compared to HC, and 504 DEG between GCA and HC in whole blood samples. Strikingly, only 19 genes were differentially expressed between AAV and GCA. ORA of DEG, distinguishing both vasculitis subtypes from HC, identified pathways exclusively involved in innate immunity. GSEA of both AAV and GCA versus HC pointed to a striking overlap in up-regulated pathways comprising seven out of ten top signalling pathways, including \u201cIL6 JAK Stat3 signalling\u201d, \u201cTNF signalling\u201d and \u201ccomplement activation\u201d. We detected increased levels of CD42a on platelets of patients with GCA, in line with an increased expression of platelet-associated genes in GCA compared to AAV. Our results suggest that the rather homogeneous transcriptome of circulating immune cells does not sufficiently explain the clinically distinct phenotypes of AAV and GCA.<\/jats:p>","DOI":"10.3390\/ijms27198513","type":"journal-article","created":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T09:07:54Z","timestamp":1790240874000},"page":"8513","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Same, Same, but Different\u2014Whole Blood Transcriptomes of ANCA-Associated Vasculitis and Giant Cell Arteritis"],"prefix":"10.3390","volume":"27","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7049-2926","authenticated-orcid":false,"given":"Jennifer","family":"Amsler","sequence":"first","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"},{"name":"Graduate School for Health Sciences, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6784-0854","authenticated-orcid":false,"given":"Marco","family":"Kreuzer","sequence":"additional","affiliation":[{"name":"Interfaculty Bioinformatics Unit, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8330-8681","authenticated-orcid":false,"given":"Liubov","family":"Petelytska","sequence":"additional","affiliation":[{"name":"Department of Internal Medicine with a Course in Cardiology and Rheumatology, Bogomolets National Medical University, 01601 Kyiv, Ukraine"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sara Andrea","family":"Kr\u00e4ttli","sequence":"additional","affiliation":[{"name":"Interfaculty Bioinformatics Unit, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oleg","family":"Iaremenko","sequence":"additional","affiliation":[{"name":"Department of Internal Medicine with a Course in Cardiology and Rheumatology, Bogomolets National Medical University, 01601 Kyiv, Ukraine"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6781-6210","authenticated-orcid":false,"given":"Matthias","family":"Brunner","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"},{"name":"Department for Biomedical Research, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Guggisberg","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"},{"name":"Department for Biomedical Research, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7358-2051","authenticated-orcid":false,"given":"Lisa","family":"Christ","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthias","family":"Gasser","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fabio","family":"Ryser","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adela","family":"Sarbu","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luca","family":"Seitz","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pascal","family":"Seitz","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Britta","family":"Maurer","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"},{"name":"Department for Biomedical Research, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5303-8027","authenticated-orcid":false,"given":"Kerstin","family":"Klein","sequence":"additional","affiliation":[{"name":"Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland"},{"name":"Department for Biomedical Research, University of Bern, 3010 Bern, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,9,24]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1038\/s41572-021-00327-5","article-title":"Large-vessel vasculitis","volume":"7","author":"Pugh","year":"2022","journal-title":"Nat. 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