{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,3]],"date-time":"2026-07-03T00:36:36Z","timestamp":1783038996326,"version":"3.54.6"},"reference-count":56,"publisher":"MDPI AG","issue":"1","license":[{"start":{"date-parts":[[2021,1,15]],"date-time":"2021-01-15T00:00:00Z","timestamp":1610668800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003593","name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","doi-asserted-by":"publisher","award":["460999\/2014-1"],"award-info":[{"award-number":["460999\/2014-1"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001807","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","doi-asserted-by":"publisher","award":["2018\/06390-9"],"award-info":[{"award-number":["2018\/06390-9"]}],"id":[{"id":"10.13039\/501100001807","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01GM121750"],"award-info":[{"award-number":["R01GM121750"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R21AI28536"],"award-info":[{"award-number":["R21AI28536"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JoF"],"abstract":"<jats:p>Paracoccidioidomycosis is an endemic fungal disease to Latin America caused by at least five species-level genotypes of Paracoccidioides, named P. lutzii, P. brasiliensis (S1a and S1b populations), P. americana, P. restrepiensis, and P. venezuelensis. In this manuscript, we report on Paracoccidioides sp. sampling efforts in armadillos from two different areas in Brazil. We sequenced the genomes of seven Paracoccidioides isolates and used phylogenomics and populations genetics for genotyping. We found that P. brasiliensis and P. lutzii are both present in the Amazon region. Additionally, we identified two Paracoccidioides isolates that seem to be the result of admixture between divergent populations within P. brasiliensis sensu stricto. Both of these isolates were recovered from armadillos in a P. lutzii endemic area in Midwestern Brazil. Additionally, two isolates from human patients also show evidence of resulting from admixture. Our results suggest that the populations of P. brasiliensis sensu stricto exchange genes in nature. More generally, they suggest that population structure and admixture within species is an important source of variation for pathogenic fungi.<\/jats:p>","DOI":"10.3390\/jof7010054","type":"journal-article","created":{"date-parts":[[2021,1,15]],"date-time":"2021-01-15T01:33:29Z","timestamp":1610674409000},"page":"54","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Paracoccidioides brasiliensis Isolated from Nine-Banded Armadillos (Dasypus novemcinctus) Reveal Population Structure and Admixture in the Amazon Basin"],"prefix":"10.3390","volume":"7","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8003-4109","authenticated-orcid":false,"given":"Eduardo","family":"Bagagli","sequence":"first","affiliation":[{"name":"Departamento de Microbiologia e Imunologia, Instituto de Bioci\u00eancias de Botucatu, Universidade Estadual Paulista\/UNESP, Botucatu SP 18618-691, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6100-3534","authenticated-orcid":false,"given":"Daniel Ricardo","family":"Matute","sequence":"additional","affiliation":[{"name":"Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7501-3362","authenticated-orcid":false,"given":"Hans Garcia","family":"Garces","sequence":"additional","affiliation":[{"name":"Departamento de Microbiologia e Imunologia, Instituto de Bioci\u00eancias de Botucatu, Universidade Estadual Paulista\/UNESP, Botucatu SP 18618-691, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bernardo Guerra","family":"Ten\u00f3rio","sequence":"additional","affiliation":[{"name":"Faculdade de Medicina, Universidade de Bras\u00edlia, Bras\u00edlia DF 70910-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adalberto Garcia","family":"Garces","sequence":"additional","affiliation":[{"name":"Departamento de Microbiologia e Imunologia, Instituto de Bioci\u00eancias de Botucatu, Universidade Estadual Paulista\/UNESP, Botucatu SP 18618-691, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lucas Gomes de Brito","family":"Alves","sequence":"additional","affiliation":[{"name":"Faculdade de Medicina, Universidade de Bras\u00edlia, Bras\u00edlia DF 70910-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8932-3954","authenticated-orcid":false,"given":"Danielle Hamae","family":"Yamauchi","sequence":"additional","affiliation":[{"name":"Departamento de Microbiologia e Imunologia, Instituto de Bioci\u00eancias de Botucatu, Universidade Estadual Paulista\/UNESP, Botucatu SP 18618-691, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marluce Francisca","family":"Hrycyk","sequence":"additional","affiliation":[{"name":"Faculdade de Ci\u00eancias Biol\u00f3gicas e Agr\u00e1rias, Universidade do Estado de Mato Grosso, Campus de Alta Floresta, Alta Floresta MT 78580-000, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3439-4517","authenticated-orcid":false,"given":"Bridget Marie","family":"Barker","sequence":"additional","affiliation":[{"name":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1763-3464","authenticated-orcid":false,"given":"Marcus de Melo","family":"Teixeira","sequence":"additional","affiliation":[{"name":"Faculdade de Medicina, Universidade de Bras\u00edlia, Bras\u00edlia DF 70910-900, Brazil"},{"name":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2021,1,15]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","unstructured":"Fisher, M.C., Gurr, S.J., Cuomo, C.A., Blehert, D.S., Jin, H., Stukenbrock, E.H., Stajich, J.E., Kahmann, R., Boone, C., and Denning, D.W. 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