{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,27]],"date-time":"2026-07-27T14:18:54Z","timestamp":1785161934560,"version":"3.55.0"},"reference-count":69,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2022,7,10]],"date-time":"2022-07-10T00:00:00Z","timestamp":1657411200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Australian Centre for Genomic Epidemiological Microbiology (AusGEM)","award":["MRFF75873"],"award-info":[{"award-number":["MRFF75873"]}]},{"name":"Australian Centre for Genomic Epidemiological Microbiology (AusGEM)","award":["IGA 218\/2021\/FVHE"],"award-info":[{"award-number":["IGA 218\/2021\/FVHE"]}]},{"name":"Australian Centre for Genomic Epidemiological Microbiology (AusGEM)","award":["18-23532S"],"award-info":[{"award-number":["18-23532S"]}]},{"name":"Medical Research Future Fund Frontier Health and Medical Research Program","award":["MRFF75873"],"award-info":[{"award-number":["MRFF75873"]}]},{"name":"Medical Research Future Fund Frontier Health and Medical Research Program","award":["IGA 218\/2021\/FVHE"],"award-info":[{"award-number":["IGA 218\/2021\/FVHE"]}]},{"name":"Medical Research Future Fund Frontier Health and Medical Research Program","award":["18-23532S"],"award-info":[{"award-number":["18-23532S"]}]},{"name":"Internal Grant Agency of VETUNI","award":["MRFF75873"],"award-info":[{"award-number":["MRFF75873"]}]},{"name":"Internal Grant Agency of VETUNI","award":["IGA 218\/2021\/FVHE"],"award-info":[{"award-number":["IGA 218\/2021\/FVHE"]}]},{"name":"Internal Grant Agency of VETUNI","award":["18-23532S"],"award-info":[{"award-number":["18-23532S"]}]},{"name":"Czech Science Foundation","award":["MRFF75873"],"award-info":[{"award-number":["MRFF75873"]}]},{"name":"Czech Science Foundation","award":["IGA 218\/2021\/FVHE"],"award-info":[{"award-number":["IGA 218\/2021\/FVHE"]}]},{"name":"Czech Science Foundation","award":["18-23532S"],"award-info":[{"award-number":["18-23532S"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microorganisms"],"abstract":"<jats:p>Wild birds, particularly silver gulls (Chroicocephalus novaehollandiae) that nest near anthropogenic sites, often harbour bacteria resistant to multiple antibiotics, including those considered of clinical importance. Here, we describe the whole genome sequence of Escherichia coli isolate CE1867 from a silver gull chick sampled in 2012 that hosted an I1 pST25 plasmid with blaSHV-12, a \u03b2-lactamase gene that encodes the ability to hydrolyze oxyimino \u03b2-lactams, and other antibiotic resistance genes. Isolate CE1867 is an ST297 isolate, a phylogroup B1 lineage, and clustered with a large ST297 O130:H11 clade, which carry Shiga toxin genes. The I1 plasmid belongs to plasmid sequence type 25 and is notable for its carriage of an atypical sul3-class 1 integron with mefB\u2206260, a structure most frequently reported in Australia from swine. This integron is a typical example of a Tn21-derived element that captured sul3 in place of the standard sul1 structure. Interestingly, the mercury resistance (mer) module of Tn21 is missing and has been replaced with Tn2-blaTEM-1 and a blaSHV-12 encoding module flanked by direct copies of IS26. Comparisons to similar plasmids, however, demonstrate a closely related family of ARG-carrying plasmids that all host variants of the sul3-associated integron with conserved Tn21 insertion points and a variable presence of both mer and mefB truncations, but predominantly mefB\u2206260.<\/jats:p>","DOI":"10.3390\/microorganisms10071387","type":"journal-article","created":{"date-parts":[[2022,7,11]],"date-time":"2022-07-11T00:06:21Z","timestamp":1657497981000},"page":"1387","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Genomic Analysis of an I1 Plasmid Hosting a sul3-Class 1 Integron and blaSHV-12 within an Unusual Escherichia coli ST297 from Urban Wildlife"],"prefix":"10.3390","volume":"10","author":[{"given":"Ethan R.","family":"Wyrsch","sequence":"first","affiliation":[{"name":"Australian Institute for Microbiology & Infection, University of Technology Sydney, Ultimo, NSW 2007, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Monika","family":"Dolejska","sequence":"additional","affiliation":[{"name":"CEITEC VETUNI, University of Veterinary Sciences Brno, 61242 Brno, Czech Republic"},{"name":"Department of Biology and Wildlife Diseases, Faculty of Veterinary Hygiene and Ecology, University of Veterinary Sciences Brno, 61242 Brno, Czech Republic"},{"name":"Department of Clinical Microbiology and Immunology, Institute of Laboratory Medicine, University Hospital Brno, 62500 Brno, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9301-5372","authenticated-orcid":false,"given":"Steven P.","family":"Djordjevic","sequence":"additional","affiliation":[{"name":"Australian Institute for Microbiology & Infection, University of Technology Sydney, Ultimo, NSW 2007, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2022,7,10]]},"reference":[{"key":"ref_1","first-page":"100027","article-title":"Environmental antibiotics and resistance genes as emerging contaminants: Methods of detection and bioremediation","volume":"2","author":"Koch","year":"2021","journal-title":"Curr. Res. Microb. Sci."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1016\/j.ecoenv.2016.10.006","article-title":"Occurrence and risk assessment of antibiotics in surface water and groundwater from different depths of aquifers: A case study at Jianghan Plain, central China","volume":"135","author":"Yao","year":"2017","journal-title":"Ecotoxicol. Environ. Saf."},{"key":"ref_3","doi-asserted-by":"crossref","unstructured":"Baralla, E., Demontis, M.P., Dess\u00ec, F., and Varoni, M.V. (2021). An Overview of Antibiotics as Emerging Contaminants: Occurrence in Bivalves as Biomonitoring Organisms. Animals, 11.","DOI":"10.3390\/ani11113239"},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.jes.2020.05.030","article-title":"A survey of sub-inhibitory concentrations of antibiotics in the environment","volume":"99","author":"Chow","year":"2021","journal-title":"J. Environ. Sci."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1111\/j.1365-2885.1994.tb00251.x","article-title":"The sulfonamide-diaminopyrimidine story","volume":"17","year":"1994","journal-title":"J. Vet. Pharmacol. Ther."},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1111\/j.1574-6976.2009.00175.x","article-title":"Gene cassettes and cassette arrays in mobile resistance integrons","volume":"33","author":"Partridge","year":"2009","journal-title":"FEMS Microbiol. Rev."},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1038\/ismej.2017.38","article-title":"Class 1 integrons are low-cost structures in Escherichia coli","volume":"11","author":"Lacotte","year":"2017","journal-title":"ISME J."},{"key":"ref_8","doi-asserted-by":"crossref","unstructured":"Dawes, F.E., Kuzevski, A., Bettelheim, K.A., Hornitzky, M.A., Djordjevic, S.P., and Walker, M.J. (2010). Distribution of class 1 integrons with IS26-mediated deletions in their 3\u2032-conserved segments in Escherichia coli of human and animal origin. PLoS ONE, 5.","DOI":"10.1371\/journal.pone.0012754"},{"key":"ref_9","doi-asserted-by":"crossref","first-page":"787","DOI":"10.1089\/mdr.2019.0277","article-title":"Molecular Analysis of an IncF ColV-Like Plasmid Lineage That Carries a Complex Resistance Locus with a Trackable Genetic Signature","volume":"26","author":"McKinnon","year":"2020","journal-title":"Microb. Drug Resist."},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.jgar.2017.08.001","article-title":"Transferability of antimicrobial resistance from multidrug-resistant Escherichia coli isolated from cattle in the USA to E. coli and Salmonella Newport recipients","volume":"11","author":"Poole","year":"2017","journal-title":"J. Glob. Antimicrob Resist."},{"key":"ref_11","first-page":"000721","article-title":"Genomic comparisons of Escherichia coli ST131 from Australia","volume":"7","author":"Li","year":"2021","journal-title":"Microb. Genom."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"148259","DOI":"10.1016\/j.scitotenv.2021.148259","article-title":"Co-occurrence of antimicrobial and metal resistance genes in pig feces and agricultural fields fertilized with slurry","volume":"792","author":"Peng","year":"2021","journal-title":"Sci. Total Environ."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"7361","DOI":"10.1038\/s41598-018-25474-w","article-title":"Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis","volume":"8","author":"Ahlstrom","year":"2018","journal-title":"Sci. Rep."},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"146964","DOI":"10.1016\/j.scitotenv.2021.146964","article-title":"Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges","volume":"783","author":"Nguyen","year":"2021","journal-title":"Sci. Total Environ."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/j.scitotenv.2019.01.150","article-title":"To burn or retain crop residues on croplands? An integrated analysis of crop residue management in China","volume":"662","author":"Chen","year":"2019","journal-title":"Sci. Total Environ."},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1096\/fj.09-144972","article-title":"Multiple antibiotic resistance gene recruitment onto the enterohemorrhagic Escherichia coli virulence plasmid","volume":"24","author":"Venturini","year":"2010","journal-title":"FASEB J."},{"key":"ref_17","doi-asserted-by":"crossref","unstructured":"Venturini, C., Hassan, K.A., Roy Chowdhury, P., Paulsen, I.T., Walker, M.J., and Djordjevic, S.P. (2013). Sequences of Two Related Multiple Antibiotic Resistance Virulence Plasmids Sharing a Unique IS26-Related Molecular Signature Isolated from Different Escherichia coli Pathotypes from Different Hosts. PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0078862"},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1016\/j.ijantimicag.2018.06.017","article-title":"Genomic analysis of multidrug-resistant Escherichia coli ST58 causing urosepsis","volume":"52","author":"McKinnon","year":"2018","journal-title":"Int. J. Antimicrob. Agents"},{"key":"ref_19","doi-asserted-by":"crossref","unstructured":"Wyrsch, E.R., Hawkey, J., Judd, L.M., Haites, R., Holt, K.E., Djordjevic, S.P., and Billman-Jacobe, H. (2019). Z\/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production. Microorganisms, 7.","DOI":"10.3390\/microorganisms7090299"},{"key":"ref_20","first-page":"e000250","article-title":"Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene","volume":"5","author":"Cummins","year":"2019","journal-title":"Microb. Genom."},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1016\/j.jgar.2015.08.002","article-title":"First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals","volume":"3","author":"Abraham","year":"2015","journal-title":"J. Glob. Antimicrob. Resist."},{"key":"ref_22","doi-asserted-by":"crossref","first-page":"18","DOI":"10.3389\/fsufs.2019.00018","article-title":"Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia","volume":"3","author":"Wyrsch","year":"2019","journal-title":"Front. Sustain. Food Syst."},{"key":"ref_23","first-page":"e000143","article-title":"Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26","volume":"3","author":"Reid","year":"2017","journal-title":"Microb. Genom."},{"key":"ref_24","doi-asserted-by":"crossref","unstructured":"Wyrsch, E., Roy Chowdhury, P., Abraham, S., Santos, J., Darling, A.E., Charles, I.G., Chapman, T.A., and Djordjevic, S.P. (2015). Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs. BMC Genom., 16.","DOI":"10.1186\/s12864-015-1382-y"},{"key":"ref_25","doi-asserted-by":"crossref","unstructured":"Zingali, T., Chapman, T.A., Webster, J., Roy Chowdhury, P., and Djordjevic, S.P. (2020). Genomic Characterisation of a Multiple Drug Resistant IncHI2 ST4 Plasmid in Escherichia coli ST744 in Australia. Microorganisms, 8.","DOI":"10.3390\/microorganisms8060896"},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1139\/cjm-2017-0609","article-title":"Plasmid persistence: Costs, benefits, and the plasmid paradox","volume":"64","author":"Carroll","year":"2018","journal-title":"Can. J. Microbiol."},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1093\/jac\/dkv306","article-title":"High prevalence of Salmonella and IMP-4-producing Enterobacteriaceae in the silver gull on Five Islands, Australia","volume":"71","author":"Dolejska","year":"2016","journal-title":"J. Antimicrob. Chemother."},{"key":"ref_28","doi-asserted-by":"crossref","first-page":"e01118-20","DOI":"10.1128\/AAC.01118-20","article-title":"Escherichia coli Sequence Type 457 Is an Emerging Extended-Spectrum-\u03b2-Lactam-Resistant Lineage with Reservoirs in Wildlife and Food-Producing Animals","volume":"65","author":"Nesporova","year":"2020","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref_29","doi-asserted-by":"crossref","unstructured":"Tarabai, H., Wyrsch, E.R., Bitar, I., Dolejska, M., and Djordjevic, S.P. (2021). Epidemic HI2 Plasmids Mobilising the Carbapenemase Gene bla(IMP-4) in Australian Clinical Samples Identified in Multiple Sublineages of Escherichia coli ST216 Colonising Silver Gulls. Microorganisms, 9.","DOI":"10.3390\/microorganisms9030567"},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"2566","DOI":"10.1093\/jac\/dkz242","article-title":"Resistance to critically important antimicrobials in Australian silver gulls (Chroicocephalus novaehollandiae) and evidence of anthropogenic origins","volume":"74","author":"Mukerji","year":"2019","journal-title":"J. Antimicrob. Chemother."},{"key":"ref_31","doi-asserted-by":"crossref","first-page":"e00743-20","DOI":"10.1128\/mSphere.00743-20","article-title":"Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids","volume":"5","author":"Cummins","year":"2020","journal-title":"mSphere"},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"e01610-20","DOI":"10.1128\/AEM.01610-20","article-title":"Implications of Foraging and Interspecies Interactions of Birds for Carriage of Escherichia coli Strains Resistant to Critically Important Antimicrobials","volume":"86","author":"Mukerji","year":"2020","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_33","first-page":"000571","article-title":"Characterization of beta-lactam-resistant Escherichia coli from Australian fruit bats indicates anthropogenic origins","volume":"7","author":"McDougall","year":"2021","journal-title":"Microb. Genom."},{"key":"ref_34","doi-asserted-by":"crossref","first-page":"2451","DOI":"10.1128\/AAC.01448-10","article-title":"Association of composite IS26-sul3 elements with highly transmissible IncI1 plasmids in extended-spectrum-beta-lactamase-producing Escherichia coli clones from humans","volume":"55","author":"Curiao","year":"2011","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref_35","first-page":"e01212221","article-title":"F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses","volume":"7","author":"Cummins","year":"2022","journal-title":"mSystems"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"e00135-18","DOI":"10.1128\/CMR.00135-18","article-title":"Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages","volume":"32","author":"Manges","year":"2019","journal-title":"Clin. Microbiol. Rev."},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1016\/j.plasmid.2016.02.002","article-title":"pCERC3 from a commensal ST95 Escherichia coli: A ColV virulence-multiresistance plasmid carrying a sul3-associated class 1 integron","volume":"84\u201385","author":"Moran","year":"2016","journal-title":"Plasmid"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"1331","DOI":"10.1099\/jmm.0.022475-0","article-title":"Commensal Escherichia coli of healthy humans: A reservoir for antibiotic-resistance determinants","volume":"59","author":"Bailey","year":"2010","journal-title":"J. Med. Microbiol."},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"1169","DOI":"10.1128\/AAC.47.3.1169-1172.2003","article-title":"A new sulfonamide resistance gene (sul3) in Escherichia coli is widespread in the pig population of Switzerland","volume":"47","author":"Perreten","year":"2003","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"843","DOI":"10.3389\/fmicb.2016.00843","article-title":"Genomic Microbial Epidemiology Is Needed to Comprehend the Global Problem of Antibiotic Resistance and to Improve Pathogen Diagnosis","volume":"7","author":"Wyrsch","year":"2016","journal-title":"Front. Microbiol."},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1111\/jam.15209","article-title":"Detection of unprecedented level of antibiotic resistance and identification of antibiotic resistance factors, including QRDR mutations in Escherichia coli isolated from commercial chickens from North India","volume":"132","author":"Rawat","year":"2022","journal-title":"J. Appl. Microbiol."},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"8182","DOI":"10.1007\/s11356-018-04065-2","article-title":"Dissemination of resistance genes in duck\/fish polyculture ponds in Guangdong Province: Correlations between Cu and Zn and antibiotic resistance genes","volume":"26","author":"Zhou","year":"2019","journal-title":"Environ. Sci. Pollut. Res. Int."},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1007\/s00248-019-01375-x","article-title":"First Report of KPC-2 and KPC-3-Producing Enterobacteriaceae in Wild Birds in Africa","volume":"79","author":"Chairat","year":"2020","journal-title":"Microb. Ecol."},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"1437","DOI":"10.1089\/mdr.2019.0020","article-title":"First Detection and Genomic Insight into mcr-1 Encoding Plasmid-Mediated Colistin-Resistance Gene in Escherichia coli ST101 Isolated from the Migratory Bird Species Hirundo rustica in Thailand","volume":"25","author":"Aeksiri","year":"2019","journal-title":"Microb. Drug Resist."},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"e00158-22","DOI":"10.1128\/msystems.00158-22","article-title":"Urban Wildlife Crisis: Australian Silver Gull Is a Bystander Host to Widespread Clinical Antibiotic Resistance","volume":"7","author":"Wyrsch","year":"2022","journal-title":"mSystems"},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1101\/gr.251678.119","article-title":"The EnteroBase user\u2019s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity","volume":"30","author":"Zhou","year":"2020","journal-title":"Genome Res."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"D195","DOI":"10.1093\/nar\/gky1050","article-title":"PLSDB: A resource of complete bacterial plasmids","volume":"47","author":"Galata","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"D32","DOI":"10.1093\/nar\/gkj014","article-title":"ISfinder: The reference centre for bacterial insertion sequences","volume":"34","author":"Siguier","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1093\/jac\/dkn131","article-title":"Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in Escherichia coli and Salmonella of human and animal origin","volume":"61","author":"Chiaretto","year":"2008","journal-title":"J. Antimicrob. Chemother."},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1186\/s13059-014-0524-x","article-title":"The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes","volume":"15","author":"Treangen","year":"2014","journal-title":"Genome Biol."},{"key":"ref_52","doi-asserted-by":"crossref","first-page":"W256","DOI":"10.1093\/nar\/gkz239","article-title":"Interactive Tree Of Life (iTOL) v4: Recent updates and new developments","volume":"47","author":"Letunic","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"ref_53","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","article-title":"Easyfig: A genome comparison visualizer","volume":"27","author":"Sullivan","year":"2011","journal-title":"Bioinformatics"},{"key":"ref_54","doi-asserted-by":"crossref","unstructured":"Alikhan, N.F., Petty, N.K., Ben Zakour, N.L., and Beatson, S.A. (2011). BLAST Ring Image Generator (BRIG): Simple prokaryote genome comparisons. BMC Genom., 12.","DOI":"10.1186\/1471-2164-12-402"},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1128\/AEM.02459-14","article-title":"Plasmid-mediated resistance to cephalosporins and fluoroquinolones in various Escherichia coli sequence types isolated from rooks wintering in Europe","volume":"81","author":"Jamborova","year":"2015","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"e01167-19","DOI":"10.1128\/AAC.01167-19","article-title":"Wildlife is overlooked in the Epidemiology of Medically Important Antibiotic-Resistant Bacteria","volume":"63","author":"Dolejska","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"656223","DOI":"10.3389\/fmicb.2021.656223","article-title":"Antimicrobial Resistance Glides in the Sky-Free-Living Birds as a Reservoir of Resistant Escherichia coli With Zoonotic Potential","volume":"12","author":"Zaja","year":"2021","journal-title":"Front. Microbiol."},{"key":"ref_58","doi-asserted-by":"crossref","unstructured":"Jinnerot, T., Tomaselli, A.T.P., Johannessen, G.S., S\u00f6derlund, R., Urdahl, A.M., Asp\u00e1n, A., and Sekse, C. (2020). The prevalence and genomic context of Shiga toxin 2a genes in E. coli found in cattle. PLoS ONE, 15.","DOI":"10.1101\/2020.04.14.040899"},{"key":"ref_59","doi-asserted-by":"crossref","unstructured":"Peng, Z., Liang, W., Hu, Z., Li, X., Guo, R., Hua, L., Tang, X., Tan, C., Chen, H., and Wang, X. (2019). O-serogroups, virulence genes, antimicrobial susceptibility, and MLST genotypes of Shiga toxin-producing Escherichia coli from swine and cattle in Central China. BMC Vet. Res., 15.","DOI":"10.1186\/s12917-019-2177-1"},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1186\/s40813-019-0116-y","article-title":"Phenotypic and genotypic characteristics of Escherichia coli with non-susceptibility to quinolones isolated from environmental samples on pig farms","volume":"5","author":"Kindle","year":"2019","journal-title":"Porc. Health Manag."},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"7563","DOI":"10.1111\/1462-2920.15689","article-title":"From farm to fork: Colistin voluntary withdrawal in Portuguese farms reflected in decreasing occurrence of mcr-1-carrying Enterobacteriaceae from chicken meat","volume":"23","author":"Ribeiro","year":"2021","journal-title":"Environ. Microbiol."},{"key":"ref_62","doi-asserted-by":"crossref","unstructured":"Roedel, A., Vincze, S., Projahn, M., Roesler, U., Rob\u00e9, C., Hammerl, J.A., Noll, M., Al Dahouk, S., and Dieckmann, R. (2021). Genetic but No Phenotypic Associations between Biocide Tolerance and Antibiotic Resistance in Escherichia coli from German Broiler Fattening Farms. Microorganisms, 9.","DOI":"10.3390\/microorganisms9030651"},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1016\/j.ijfoodmicro.2017.06.020","article-title":"Characterization of antibiotic resistant and pathogenic Escherichia coli in irrigation water and vegetables in household farms","volume":"257","author":"Silva","year":"2017","journal-title":"Int. J. Food Microbiol."},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1111\/zph.12818","article-title":"Genomic features and antimicrobial resistance patterns of Shiga toxin-producing Escherichia coli strains isolated from food in Chile","volume":"68","author":"Fuenzalida","year":"2021","journal-title":"Zoonoses Public Health"},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1016\/j.plasmid.2011.07.003","article-title":"Comparative genomics and phylogeny of the IncI1 plasmids: A common plasmid type among porcine enterotoxigenic Escherichia coli","volume":"66","author":"Johnson","year":"2011","journal-title":"Plasmid"},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"1589","DOI":"10.1093\/jac\/dkx024","article-title":"Analysis of blaSHV-12-carrying Escherichia coli clones and plasmids from human, animal and food sources","volume":"72","author":"Alonso","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"2136","DOI":"10.1038\/s41598-021-81683-w","article-title":"Antibiotic resistance plasmid composition and architecture in Escherichia coli isolates from meat","volume":"11","author":"Darphorn","year":"2021","journal-title":"Sci. Rep."},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1089\/mdr.2017.0226","article-title":"Characterization of Cefotaxime- and Ciprofloxacin-Resistant Commensal Escherichia coli Originating from Belgian Farm Animals Indicates High Antibiotic Resistance Transfer Rates","volume":"24","author":"Lambrecht","year":"2018","journal-title":"Microb. Drug Resist."},{"key":"ref_69","first-page":"e000295","article-title":"Clonal ST131-H22 Escherichia coli strains from a healthy pig and a human urinary tract infection carry highly similar resistance and virulence plasmids","volume":"5","author":"Reid","year":"2019","journal-title":"Microb. Genom."}],"container-title":["Microorganisms"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2076-2607\/10\/7\/1387\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T23:47:38Z","timestamp":1760140058000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2076-2607\/10\/7\/1387"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7,10]]},"references-count":69,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2022,7]]}},"alternative-id":["microorganisms10071387"],"URL":"https:\/\/doi.org\/10.3390\/microorganisms10071387","relation":{},"ISSN":["2076-2607"],"issn-type":[{"value":"2076-2607","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,7,10]]}}}