{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T15:50:19Z","timestamp":1787068219807,"version":"build-2736575974"},"reference-count":47,"publisher":"MDPI AG","issue":"12","license":[{"start":{"date-parts":[[2024,12,20]],"date-time":"2024-12-20T00:00:00Z","timestamp":1734652800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000865","name":"Bill &amp; Melinda Gates Foundation","doi-asserted-by":"publisher","award":["OPP1193112"],"award-info":[{"award-number":["OPP1193112"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microorganisms"],"abstract":"<jats:p>Escherichia coli is a significant pathogen responsible for infections in both humans and livestock, possessing various virulence mechanisms and antimicrobial resistance that make it even more concerning. In this study, several internationally recognized clones of E. coli were identified, such as ST131, ST38, ST648, and ST354, from chicken meat, pork, and human infection samples. Notably, ST131, belonging to phylogroup B2, was the dominant sequence type (ST) in human samples, while ST38, belonging to phylogroup D, was the most prevalent in meat samples. Several antibiotic resistance genes were identified: the gyrA gene mutation was the most prevalent, and CTX-M-55 was the most common extended-spectrum beta-lactamases (ESBLs), with significant differences noted for CTX-M-2 and CTX-M-15. Virulence-associated genes (VAGs) such as gad and iss were frequently found, especially in human isolates. These findings highlight the complex epidemiology of antibiotic-resistant E. coli in community settings and the potential risks associated with commercial meat.<\/jats:p>","DOI":"10.3390\/microorganisms12122645","type":"journal-article","created":{"date-parts":[[2024,12,20]],"date-time":"2024-12-20T06:44:33Z","timestamp":1734677073000},"page":"2645","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Molecular Analysis of Escherichia coli and Correlations Between Phylogroups and Sequence Types from Different Sources"],"prefix":"10.3390","volume":"12","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4208-1836","authenticated-orcid":false,"given":"Jo\u00e3o Gabriel Material","family":"Soncini","sequence":"first","affiliation":[{"name":"Department of Pathology, Clinical and Toxicological Analysis, Health Sciences Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vanessa Lumi","family":"Koga","sequence":"additional","affiliation":[{"name":"Department of Pathology, Clinical and Toxicological Analysis, Health Sciences Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bruna","family":"Fuga","sequence":"additional","affiliation":[{"name":"Department of Cell Biology, Institute of Biological Sciences, University of Bras\u00edlia, Bras\u00edlia 70910-900, Goi\u00e1s, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6267-0155","authenticated-orcid":false,"given":"Zuleica Naomi","family":"Tano","sequence":"additional","affiliation":[{"name":"Department of Pathology, Clinical and Toxicological Analysis, Health Sciences Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8624-795X","authenticated-orcid":false,"given":"Gerson","family":"Nakazato","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Biological Science Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7170-2155","authenticated-orcid":false,"given":"Renata Katsuko Takayama","family":"Kobayashi","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Biological Science Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0161-5800","authenticated-orcid":false,"given":"Nilton","family":"Lincopan","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Biomedical Sciences Institute, University of S\u00e3o Paulo, S\u00e3o Paulo 05508-220, S\u00e3o Paulo, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3345-153X","authenticated-orcid":false,"given":"Eliana Carolina","family":"Vespero","sequence":"additional","affiliation":[{"name":"Department of Pathology, Clinical and Toxicological Analysis, Health Sciences Center, State University of Londrina, Londrina 86057-970, Paran\u00e1, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2024,12,20]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","unstructured":"Zhou, Y., Zhou, Z., Zheng, L., Gong, Z., Li, Y., Jin, Y., Huang, Y., and Chi, M. 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