{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T05:28:09Z","timestamp":1786426089834,"version":"build-2736575974"},"reference-count":87,"publisher":"MDPI AG","issue":"8","license":[{"start":{"date-parts":[[2026,8,9]],"date-time":"2026-08-09T00:00:00Z","timestamp":1786233600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"Natural Science Foundation of China","doi-asserted-by":"publisher","award":["4240072417"],"award-info":[{"award-number":["4240072417"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"award":["4240072417"],"award-info":[{"award-number":["4240072417"]}],"id":[{"id":"https:\/\/ror.org\/01h0zpd94","id-type":"ROR","asserted-by":"publisher"}]},{"name":"National Key Research and Development Program of China","award":["2022YFD1900900"],"award-info":[{"award-number":["2022YFD1900900"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microorganisms"],"abstract":"<jats:p>The decomposition of crop residue is indispensable for carbon (C) cycling in agricultural ecosystems, and nitrogen (N) application has a pronounced effect on this by regulating the C\/N ratio and microbial growth strategy. This study investigated how different inorganic and organic nitrogen sources interact with soil properties to regulate straw decomposition, nutrient release, microbial community assembly, and microbial interaction networks across typical cropland soils of the North China Plain. Five treatments, i.e., no N addition, urea, calcium nitrate, yeast derivatives, and glutamate, were conducted in fluvo-aquic soil, lime concretion black soil, cinnamon soil, and yellow-cinnamon soil. We found that soil type strongly regulated straw decomposition dynamics, with cumulative decomposition rates varying greatly among the four soil types after 180 days, ranging from 55.78% to 68.75%. In particular, the lime concretion black soil exhibited the highest straw decomposition and C release rates, which harbored higher relative abundances of potential straw-decomposing taxa, including Luteibacter, Chitinophaga, Dothideomycetes, and Leotiomycetes. Bacterial community assembly shifted from stochastic dominance at early stages to deterministic selection at later stages, whereas fungal community assembly remained predominantly stochastic with increasing dispersal limitation during late decomposition. The dominant bacterial phyla were Proteobacteria and Bacteroidota, and the fungal community composition succeeded from Alternaria, Rhizopus, Cladosporium and Meyerozyma to Chaetomium, Schizophecium and Apodus. Compared with no N addition, yeast derivatives significantly increased the straw decomposition rate in fluvo-aquic soil, lime concretion black soil, and cinnamon soil by 15.00, 10.66, and 12.19 percentage points, respectively, within 14 days. This is related to the enhanced complexity of the bacterial co-occurrence network, among which Altererythrobacter, Sphingomonas, Candidatus_Xiphinematobacter, Devosia, and Chitinophaga were identified as key microbial groups. Glutamate stimulated later decomposition by modifying the fungal community structure and strengthening fungal interactions centered on Alternaria and Schizothechium. These findings reveal how N forms regulate straw decomposition through soil-dependent microbial assembly and interaction networks, providing a mechanistic basis for optimizing nitrogen management strategies for efficient straw nutrient recycling.<\/jats:p>","DOI":"10.3390\/microorganisms14081753","type":"journal-article","created":{"date-parts":[[2026,8,10]],"date-time":"2026-08-10T01:20:03Z","timestamp":1786324803000},"page":"1753","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Nitrogen Sources Reshape Microbial Community Assembly and Interaction Networks to Regulate Straw Decomposition and Carbon Release in Cropland Soils of the North China Plain"],"prefix":"10.3390","volume":"14","author":[{"given":"Yaxian","family":"Wang","sequence":"first","affiliation":[{"name":"State Key Laboratory of High-Efficiency Production of Wheat-Maize Double Cropping, College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China"},{"name":"College of Agronomy, Henan Agricultural University, Zhengzhou 450046, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1992-2542","authenticated-orcid":false,"given":"Tengfei","family":"Guo","sequence":"additional","affiliation":[{"name":"Institution of Plant Nutrition and Environmental Resources, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0707-1018","authenticated-orcid":false,"given":"Chao","family":"Ai","sequence":"additional","affiliation":[{"name":"Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuyan","family":"Fan","sequence":"additional","affiliation":[{"name":"State Key Laboratory of High-Efficiency Production of Wheat-Maize Double Cropping, College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yilun","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of High-Efficiency Production of Wheat-Maize Double Cropping, College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fengjun","family":"Zheng","sequence":"additional","affiliation":[{"name":"State Key Laboratory of High-Efficiency Production of Wheat-Maize Double Cropping, College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qian","family":"Zhang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of High-Efficiency Production of Wheat-Maize Double Cropping, College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,8,9]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"3269","DOI":"10.5194\/essd-12-3269-2020","article-title":"Global carbon budget 2020","volume":"12","author":"Friedlingstein","year":"2020","journal-title":"Earth Syst. Sci. Data."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"105171","DOI":"10.1016\/j.still.2021.105171","article-title":"Soil organic carbon, total nitrogen, available nutrients, and yield under different straw returning methods","volume":"214","author":"Huang","year":"2021","journal-title":"Soil Tillage Res."},{"key":"ref_3","doi-asserted-by":"crossref","unstructured":"Wang, N., Ai, Z., Zhang, Q., Leng, P., Qiao, Y., Li, Z., Tian, C., Shi, X., Cheng, H., and Chen, G. (2025). The variations of wheat-maize production, soil organic carbon, and carbon footprints: Insights from a 20-year on-farm observational experiment in the North China Plain. Front. Plant Sci., 16.","DOI":"10.3389\/fpls.2025.1547431"},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"998","DOI":"10.1016\/j.ecolind.2018.05.081","article-title":"Distribution characteristics, resource utilization and popularizing demonstration of crop straw in southwest China: A comprehensive evaluation","volume":"93","author":"Wang","year":"2018","journal-title":"Ecol. Indic."},{"key":"ref_5","first-page":"100028","article-title":"In-situ straw return, combined with plastic film use, influences soil properties and tomato quality and yield in greenhouse conditions","volume":"2","author":"Han","year":"2024","journal-title":"Agric. Commun."},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"e200","DOI":"10.1002\/fes3.200","article-title":"Effect of straw returning on soil organic carbon in rice-wheat rotation system: A review","volume":"9","author":"Jin","year":"2020","journal-title":"Food Energy Secur."},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"2977","DOI":"10.1021\/acs.est.1c07518","article-title":"Role of organic and conservation agriculture in ammonia emissions and crop productivity in China","volume":"56","author":"Xu","year":"2022","journal-title":"Environ. Sci. Technol."},{"key":"ref_8","doi-asserted-by":"crossref","first-page":"2686","DOI":"10.1111\/gcb.15018","article-title":"Effects of long-term straw return on soil organic carbon storage and sequestration rate in North China upland crops: A meta-analysis","volume":"26","author":"Berhane","year":"2020","journal-title":"Glob. Change Biol."},{"key":"ref_9","doi-asserted-by":"crossref","first-page":"812","DOI":"10.1126\/science.1185383","article-title":"Food security: The challenge of feeding 9 billion people","volume":"327","author":"Godfray","year":"2010","journal-title":"Science"},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"107200","DOI":"10.1016\/j.ecolind.2020.107200","article-title":"Extracellular enzyme activity and stoichiometry: The effect of soil microbial element limitation during leaf litter decomposition","volume":"121","author":"Bai","year":"2021","journal-title":"Ecol. Indic."},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"1648","DOI":"10.2136\/sssaj2013.05.0179","article-title":"Long-term experimental nitrogen deposition alters the composition of the active fungal community in the forest floor","volume":"77","author":"Entwistle","year":"2013","journal-title":"Soil Sci. Soc. Am. J."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"2775","DOI":"10.1111\/gcb.14154","article-title":"Microbial mechanisms of carbon priming effects revealed during the interaction of crop residue and nutrient inputs in contrasting soils","volume":"24","author":"Fang","year":"2018","journal-title":"Glob. Change Biol."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1016\/j.soilbio.2015.08.014","article-title":"Differential responses of total and active soil microbial communities to long-term experimental N deposition","volume":"90","author":"Freedman","year":"2015","journal-title":"Soil Biol. Biochem."},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1016\/j.soilbio.2016.03.008","article-title":"Soil microbial carbon use efficiency and biomass turnover in a long-term fertilization experiment in a temperate grassland","volume":"97","author":"Spohn","year":"2016","journal-title":"Soil Biol. Biochem."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/j.soilbio.2018.03.003","article-title":"Microbial stoichiometric flexibility regulates rice straw mineralization and its priming effect in paddy soil","volume":"121","author":"Zhu","year":"2018","journal-title":"Soil Biol. Biochem."},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/j.ejsobi.2018.10.002","article-title":"Effects of nitrogen addition on soil organic carbon mineralization after maize stalk addition","volume":"89","author":"Wang","year":"2018","journal-title":"Eur. J. Soil Biol."},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1007\/s10533-004-0363-z","article-title":"The seasonal dynamics of amino acids and other nutrients in Alaskan Arctic tundra soils","volume":"73","author":"Weintraub","year":"2005","journal-title":"Biogeochemistry"},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1007\/s10021-009-9309-6","article-title":"Cross-ecosystem comparisons of in situ plant uptake of amino acid-N and NH4+","volume":"13","author":"McFarland","year":"2010","journal-title":"Ecosystems"},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"wraf040","DOI":"10.1093\/ismejo\/wraf040","article-title":"Plant growth-promotion triggered by extracellular polymer is associated with facilitation of bacterial cross-feeding networks of the rhizosphere","volume":"19","author":"Gu","year":"2025","journal-title":"ISME J."},{"key":"ref_20","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1186\/s40168-021-01186-8","article-title":"Glutamic acid reshapes the plant microbiota to protect plants against pathogens","volume":"9","author":"Kim","year":"2021","journal-title":"Microbiome"},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"104448","DOI":"10.1016\/j.eti.2025.104448","article-title":"Exogenous addition of glutamic-based organic nitrogen stimulates straw decomposition by alter-ing bacterial community assemblage and network formation","volume":"40","author":"Hua","year":"2025","journal-title":"Environ. Technol. Innov."},{"key":"ref_22","doi-asserted-by":"crossref","first-page":"102300","DOI":"10.1016\/j.fbio.2022.102300","article-title":"Yeast derived metabolites and their impact on nutritional and bioactive properties of African fermented maize products","volume":"51","author":"Mehlomakulu","year":"2023","journal-title":"Food Biosci."},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1016\/S2095-3119(20)63238-5","article-title":"Nitrogen release and re-adsorption dynamics on crop straw residue during straw decomposition in an Alfisol","volume":"20","author":"Li","year":"2021","journal-title":"J. Integr. Agric."},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"108537","DOI":"10.1016\/j.agrformet.2021.108537","article-title":"Cover crop residue moisture content controls diurnal variations in surface residue decomposition","volume":"308","author":"Thapa","year":"2021","journal-title":"Agric. For. Meteorol."},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1007\/s00226-023-01460-y","article-title":"Lignocellulose degradation pattern and structural change of the sawdust substrate and enzyme secretion by Lentinula edodes during its production","volume":"57","author":"Liu","year":"2023","journal-title":"Wood Sci. Technol."},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1038\/s41396-018-0279-6","article-title":"Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing","volume":"13","author":"Wilhelm","year":"2019","journal-title":"ISME J."},{"key":"ref_27","doi-asserted-by":"crossref","unstructured":"Bradford, M.A. (2013). Thermal adaptation of decomposer communities in warming soils. Front. Microbiol., 4.","DOI":"10.3389\/fmicb.2013.00333"},{"key":"ref_28","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1038\/nature11336","article-title":"Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota","volume":"488","author":"Bulgarelli","year":"2012","journal-title":"Nature"},{"key":"ref_29","doi-asserted-by":"crossref","first-page":"11994","DOI":"10.1073\/pnas.1811269115","article-title":"Decomposition responses to climate depend on microbial community composition","volume":"115","author":"Glassman","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"1275","DOI":"10.1111\/nph.19653","article-title":"Maize functional requirements drive the selection of rhizobacteria under long-term fertilization practices","volume":"242","author":"Zhang","year":"2024","journal-title":"New Phytol."},{"key":"ref_31","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1016\/j.soilbio.2015.09.001","article-title":"Effect of added nitrogen on plant litter decomposition depends on initial soil carbon and nitrogen stoichiometry","volume":"91","author":"Finn","year":"2015","journal-title":"Soil Biol. Biochem."},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1007\/s11104-016-3120-x","article-title":"Crop residue quality and soil type influence the priming effect but not the fate of crop residue C","volume":"414","author":"Schmatz","year":"2016","journal-title":"Plant Soil"},{"key":"ref_33","first-page":"2118","article-title":"Dynamics Characteristic of Straw De-composition and Nutrient Release Under Different C\/N Ratio","volume":"56","author":"Li","year":"2023","journal-title":"Sci. Agric. Sin."},{"key":"ref_34","doi-asserted-by":"crossref","unstructured":"Shen, B., Zheng, X., Zheng, L., Yang, Y., Xiao, D., Sheng, Z., Wang, Y., and Ai, B. (2026). Beyond the C\/N Ratio: The Critical Role of Carbon Bioavailability in Aerobic Composting of Agri-cultural Waste. Clean Technol., 8.","DOI":"10.3390\/cleantechnol8020046"},{"key":"ref_35","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1186\/s40168-023-01612-z","article-title":"Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments","volume":"11","author":"Zhou","year":"2023","journal-title":"Microbiome"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"e00002\u201317","DOI":"10.1128\/MMBR.00002-17","article-title":"Stochastic community assembly: Does it matter in microbial ecology?","volume":"81","author":"Zhou","year":"2017","journal-title":"Microbiol. Mol. Biol. Rev."},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1093\/biomet\/93.3.491","article-title":"Adaptive linear step-up procedures that control the false discovery rate","volume":"93","author":"Benjamini","year":"2006","journal-title":"Biometrika"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"1","DOI":"10.18637\/jss.v046.i11","article-title":"Fast R functions for robust correlations and hierarchical clustering","volume":"46","author":"Langfelder","year":"2012","journal-title":"J. Stat. Softw."},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1016\/j.physa.2015.09.023","article-title":"Optimal network topology for structural robustness based on natural connectivity","volume":"443","author":"Peng","year":"2016","journal-title":"Phys. A"},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"103064","DOI":"10.1016\/j.eti.2023.103064","article-title":"A novel fungal agent for straw returning to enhance straw decomposition and nutrients release","volume":"30","author":"Gao","year":"2023","journal-title":"Environ. Technol. Innov."},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"3327","DOI":"10.1128\/AEM.00083-13","article-title":"Assessing the relative effects of geographic location and soil type on microbial communities associated with straw decomposition","volume":"79","author":"Sun","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.apsoil.2019.02.018","article-title":"Change in straw decomposition rate and soil microbial community composition after straw addition in different long-term fertilization soils","volume":"138","author":"Zhao","year":"2019","journal-title":"Appl. Soil Ecol."},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"104677","DOI":"10.1016\/j.catena.2020.104677","article-title":"Simulating the effects of soil temperature and soil moisture on CO2 and CH4 emissions in rice straw-enriched paddy soil","volume":"194","author":"Zhang","year":"2020","journal-title":"Catena"},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"1589","DOI":"10.1128\/AEM.02775-08","article-title":"Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization","volume":"75","author":"Rousk","year":"2009","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"wrae073","DOI":"10.1093\/ismejo\/wrae073","article-title":"Mechanisms and implications of bacterial-fungal competition for soil resources","volume":"18","author":"Wang","year":"2024","journal-title":"ISME J."},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"105679","DOI":"10.1016\/j.still.2023.105679","article-title":"Trade-off between microbial ecophysiological features regulated by soil fertility governs plant residue decomposition","volume":"229","author":"Bao","year":"2023","journal-title":"Soil Tillage Res."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"105746","DOI":"10.1016\/j.apsoil.2024.105746","article-title":"Soil pore structure shaped compositions and structures of soil microbial community during 13C-labelled maize straw decomposition","volume":"204","author":"Ding","year":"2024","journal-title":"Appl. Soil Ecol."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"8018","DOI":"10.1002\/ece3.6264","article-title":"Drought conditions alter litter decomposition and nutrient release of litter types in an agroforestry system of China","volume":"10","author":"Xie","year":"2020","journal-title":"Ecol. Evol."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/s41579-020-0412-1","article-title":"Plant-microbiome interactions: From community assembly to plant health","volume":"18","author":"Trivedi","year":"2020","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"3833","DOI":"10.1038\/s41467-019-11787-5","article-title":"Diversity-triggered deterministic bacterial assembly constrains community functions","volume":"10","author":"Xun","year":"2019","journal-title":"Nat. Commun."},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"166092","DOI":"10.1016\/j.scitotenv.2023.166092","article-title":"Microbial ecological clusters structured by environments drive maize residue decomposition at the continental scale","volume":"902","author":"Zhang","year":"2023","journal-title":"Sci. Total Environ."},{"key":"ref_52","doi-asserted-by":"crossref","first-page":"e17160","DOI":"10.1111\/gcb.17160","article-title":"Community assembly of organisms regulates soil microbial functional potential through dual mechanisms","volume":"30","author":"Zhu","year":"2024","journal-title":"Glob. Change Biol."},{"key":"ref_53","doi-asserted-by":"crossref","first-page":"e2","DOI":"10.1002\/imt2.2","article-title":"Linking soil fungi to bacterial community assembly in arid ecosystems","volume":"1","author":"Jiao","year":"2022","journal-title":"iMeta"},{"key":"ref_54","doi-asserted-by":"crossref","first-page":"e6746","DOI":"10.7717\/peerj.6746","article-title":"Deterministic processes dominate soil microbial community assembly in subalpine coniferous forests on the Loess Plateau","volume":"7","author":"Zhao","year":"2019","journal-title":"PeerJ"},{"key":"ref_55","doi-asserted-by":"crossref","unstructured":"Sun, R., Wang, X., Alhaj Hamoud, Y., Lu, M., Shaghaleh, H., Zhang, W., Zhang, C., and Ma, C. (2023). Dynamic variation of bacterial community assemblage and functional profiles during rice straw degradation. Front. Microbiol., 14.","DOI":"10.3389\/fmicb.2023.1173442"},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"103683","DOI":"10.1016\/j.ejsobi.2024.103683","article-title":"Differences in succession of bacterial communities during co-cultivation of corn straw with different soils","volume":"123","author":"Liu","year":"2024","journal-title":"Eur. J. Soil Biol."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1186\/s13068-016-0439-8","article-title":"Genomic and secretomic insight into lignocellulolytic system of an endophytic bacterium Pantoea ananatis Sd-1","volume":"9","author":"Ma","year":"2016","journal-title":"Biotechnol. Biofuels."},{"key":"ref_58","doi-asserted-by":"crossref","first-page":"1620","DOI":"10.1134\/S1064229320090112","article-title":"Succession of bacterial communities in the decomposition of oats straw in two soils with contrasting properties","volume":"53","author":"Orlova","year":"2020","journal-title":"Eurasian Soil Sci."},{"key":"ref_59","doi-asserted-by":"crossref","unstructured":"Evseev, P., Lukianova, A., Tarakanov, R., Tokmakova, A., Popova, A., Kulikov, E., Shneider, M., Ignatov, A., and Miroshnikov, K. (2023). Prophage-derived regions in Curtobacterium genomes: Good things, small packages. Int. J. Mol. Sci., 24.","DOI":"10.3390\/ijms24021586"},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"139901","DOI":"10.1016\/j.jclepro.2023.139901","article-title":"Different Bacillus sp. play different roles on humic acid during lignocellulosic biomass composting","volume":"434","author":"Zhao","year":"2024","journal-title":"J. Clean. Prod."},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"25279","DOI":"10.1038\/srep25279","article-title":"Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems","volume":"6","author":"Becher","year":"2016","journal-title":"Sci. Rep."},{"key":"ref_62","doi-asserted-by":"crossref","first-page":"e02231\u201318","DOI":"10.1128\/AEM.02231-18","article-title":"Focused metabolism of \u03b2-glucans by the soil Bacteroidetes species Chitinophaga pinensis","volume":"85","author":"McKee","year":"2019","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_63","first-page":"E1326","article-title":"Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession","volume":"112","author":"Stegen","year":"2015","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"105060","DOI":"10.1016\/j.apsoil.2023.105060","article-title":"Conservation tillage and moderate nitrogen application changed the composition, assembly pattern and interaction network of abundant and rare microbial community on straw surface","volume":"191","author":"Zhang","year":"2023","journal-title":"Appl. Soil Ecol."},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"394","DOI":"10.1016\/j.copbio.2010.10.009","article-title":"The emerging role for bacteria in lignin degradation and bio-product formation","volume":"22","author":"Bugg","year":"2011","journal-title":"Curr. Opin. Biotechnol."},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1111\/aab.12729","article-title":"Taxonomic structure and function of the corn stover degradative microbial consortium GF-20 following growth on different sources of nitrogen","volume":"180","author":"Borjigin","year":"2022","journal-title":"Ann. Appl. Biol."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.chemosphere.2017.01.023","article-title":"Effects of Cry1Ab Bt maize straw return on bacterial community of earthworm Eisenia fetida","volume":"173","author":"Shu","year":"2017","journal-title":"Chemosphere"},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"e00887-23","DOI":"10.1128\/msystems.00887-23","article-title":"Disturbance-diversity relationships of microbial communities change based on growth substrate","volume":"9","author":"Hoang","year":"2024","journal-title":"mSystems"},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"134882","DOI":"10.1016\/j.chemosphere.2022.134882","article-title":"Recycled utilization of ryegrass litter in constructed wetland coupled microbial fuel cell for carbon-limited wastewater treatment","volume":"302","author":"Tao","year":"2022","journal-title":"Chemosphere"},{"key":"ref_70","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1016\/j.ejsobi.2012.09.006","article-title":"Temporal effect of straw addition on amino acid utilization by soil microorganisms","volume":"53","author":"Geisseler","year":"2012","journal-title":"Eur. J. Soil Biol."},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1016\/j.soilbio.2017.04.018","article-title":"Nitrogen fertilization decreases the decomposition of soil organic matter and plant residues in planted soils","volume":"112","author":"Li","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref_72","doi-asserted-by":"crossref","first-page":"115127","DOI":"10.1016\/j.geoderma.2021.115127","article-title":"Linking microbial taxa and the effect of mineral nitrogen forms on residue decomposition at the early stage in arable soil by DNA-qSIP","volume":"400","author":"Dong","year":"2021","journal-title":"Geoderma"},{"key":"ref_73","doi-asserted-by":"crossref","first-page":"121081","DOI":"10.1016\/j.indcrop.2025.121081","article-title":"Legume straw incorporation with optimal nitrogen fertilizer improves soil quality and reduces the carbon footprint of farmland ecosystems in semiarid areas","volume":"230","author":"Song","year":"2025","journal-title":"Ind. Crop. Prod."},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"2058","DOI":"10.1016\/j.soilbio.2010.08.021","article-title":"Pathways of nitrogen utilization by soil microorganisms-A review","volume":"42","author":"Geisseler","year":"2010","journal-title":"Soil Biol. Biochem."},{"key":"ref_75","doi-asserted-by":"crossref","unstructured":"Maturana, M., Castillejos, L., Martin-Orue, S.M., Minel, A., Chetty, O., Felix, A.P., and Adib Lesaux, A. (2023). Potential benefits of yeast Saccharomyces and their derivatives in dogs and cats: A review. Front. Vet. Sci., 10.","DOI":"10.3389\/fvets.2023.1279506"},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1016\/j.anifeedsci.2017.11.010","article-title":"Yeast and yeast derivatives in feed additives and ingredients: Sources, characteristics, animal responses, and quantification methods","volume":"235","author":"Shurson","year":"2018","journal-title":"Anim. Feed Sci. Technol."},{"key":"ref_77","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1111\/sum.12617","article-title":"Different techniques for high-throughput amplicon sequencing of the soil bacterial community structure after spring maize cultivation","volume":"37","author":"Yang","year":"2021","journal-title":"Soil Use Manag."},{"key":"ref_78","doi-asserted-by":"crossref","first-page":"124126","DOI":"10.1016\/j.biortech.2020.124126","article-title":"Efficient simultaneous utilization of glucose and xylose from corn straw by Sphingomonas sanxanigenens NX02 to produce microbial exopolysaccharide","volume":"319","author":"Wu","year":"2021","journal-title":"Bioresour. Technol."},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"300","DOI":"10.1111\/j.1462-2920.2008.01767.x","article-title":"Universal and species-specific bacterial \u2018fungiphiles\u2019 in the mycospheres of different basidiomycetous fungi","volume":"11","author":"Warmink","year":"2009","journal-title":"Environ. Microbiol."},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"98362","DOI":"10.1007\/s11356-023-29380-1","article-title":"Changes in the abundance and diversity of bacterial and archaeal communities at different depths in a eutrophic freshwater lake in southwestern Mexico","volume":"30","year":"2023","journal-title":"Environ. Sci. Pollut. Res."},{"key":"ref_81","doi-asserted-by":"crossref","first-page":"2563","DOI":"10.3390\/ijms13032563","article-title":"Isolation and identification of cellulolytic bacteria from the gut of Holotrichia parallela larvae (Coleoptera: Scarabaeidae)","volume":"13","author":"Huang","year":"2012","journal-title":"Int. J. Mol. Sci."},{"key":"ref_82","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.1038\/s41598-020-58163-8","article-title":"Defining the environmental adaptations of genus Devosia: Insights into its expansive short peptide transport system and positively selected genes","volume":"10","author":"Talwar","year":"2020","journal-title":"Sci. Rep."},{"key":"ref_83","doi-asserted-by":"crossref","first-page":"103247","DOI":"10.1016\/j.ejsobi.2020.103247","article-title":"Effects of root exudate stoichiometry on CO2 emission from paddy soil","volume":"101","author":"Liu","year":"2020","journal-title":"Eur. J. Soil Biol."},{"key":"ref_84","doi-asserted-by":"crossref","first-page":"111238","DOI":"10.1016\/j.plantsci.2022.111238","article-title":"Glutamate: A multifunctional amino acid in plants","volume":"318","author":"Liao","year":"2022","journal-title":"Plant Sci."},{"key":"ref_85","doi-asserted-by":"crossref","first-page":"e240137","DOI":"10.1530\/REP-24-0137","article-title":"A scoping review regarding reproductive capacity modulation based on alpha-ketoglutarate supplementation","volume":"168","author":"Doroftei","year":"2024","journal-title":"Reproduction"},{"key":"ref_86","doi-asserted-by":"crossref","unstructured":"Dettman, J.R., Eggertson, Q.A., and Kim, N.E. (2023). Species diversity and molecular characterization of Alternaria section Alternaria isolates collected mainly from cereal crops in Canada. Front. Microbiol., 14.","DOI":"10.3389\/fmicb.2023.1194911"},{"key":"ref_87","first-page":"1569748","article-title":"Alternaria mycotoxins in food and feed: An overview","volume":"2017","author":"Oueslati","year":"2017","journal-title":"J. Food Qual."}],"container-title":["Microorganisms"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2076-2607\/14\/8\/1753\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T04:37:35Z","timestamp":1786423055000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2076-2607\/14\/8\/1753"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,8,9]]},"references-count":87,"journal-issue":{"issue":"8","published-online":{"date-parts":[[2026,8]]}},"alternative-id":["microorganisms14081753"],"URL":"https:\/\/doi.org\/10.3390\/microorganisms14081753","relation":{},"ISSN":["2076-2607"],"issn-type":[{"value":"2076-2607","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,8,9]]}}}