{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,12]],"date-time":"2026-09-12T14:14:15Z","timestamp":1789222455513,"version":"build-2803163510"},"reference-count":156,"publisher":"MDPI AG","issue":"1","license":[{"start":{"date-parts":[[2025,1,12]],"date-time":"2025-01-12T00:00:00Z","timestamp":1736640000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004837","name":"\u201cMinisterio de Ciencia e Innovaci\u00f3n\u201d (Spain)","doi-asserted-by":"publisher","award":["PID2021-123389OB-I00"],"award-info":[{"award-number":["PID2021-123389OB-I00"]}],"id":[{"id":"10.13039\/501100004837","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004837","name":"\u201cMinisterio de Ciencia e Innovaci\u00f3n\u201d (Spain)","doi-asserted-by":"publisher","award":["PID2022-137487OB-I00"],"award-info":[{"award-number":["PID2022-137487OB-I00"]}],"id":[{"id":"10.13039\/501100004837","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Pathogens"],"abstract":"<jats:p>Trypanosoma cruzi is the causative agent of Chagas disease, a neglected tropical disease, and one of the most important parasitic diseases worldwide. The first genome of T. cruzi was sequenced in 2005, and its complexity made assembly and annotation challenging. Nowadays, new sequencing methods have improved some strains\u2019 genome sequence and annotation, revealing this parasite\u2019s extensive genetic diversity and complexity. In this review, we examine the genetic diversity, the genomic structure, and the principal multi-gene families involved in the pathogenicity of T. cruzi. The T. cruzi genome sequence is divided into two compartments: the core (conserved) and the disruptive (variable in length and multicopy gene families among strains). The disruptive region has also been described as genome plasticity and plays a key role in the parasite survival and infection process. This region comprises several multi-gene families, including trans-sialidases, mucins, and mucin-associated surface proteins (MASPs). Trans-sialidases are the most prevalent genes in the genome with a key role in the infection process, while mucins and MASPs are also significant glycosylated proteins expressed on the parasite surface, essential for its biological functions, as host\u2013parasite interaction, host cell invasion or protection against the host immune system, in both insect and mammalian stages. Collectively, in this review, some of the most recent advances in the structure and composition of the T. cruzi genome are reviewed.<\/jats:p>","DOI":"10.3390\/pathogens14010061","type":"journal-article","created":{"date-parts":[[2025,1,13]],"date-time":"2025-01-13T07:40:08Z","timestamp":1736754008000},"page":"61","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Trypanosoma cruzi: Genomic Diversity and Structure"],"prefix":"10.3390","volume":"14","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1137-891X","authenticated-orcid":false,"given":"Alfonso","family":"Herreros-Cabello","sequence":"first","affiliation":[{"name":"Centro de Biolog\u00eda Molecular Severo Ochoa, Consejo Superior de Investigaciones Cient\u00edficas, Universidad Aut\u00f3noma de Madrid, Cantoblanco, 28049 Madrid, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2378-3904","authenticated-orcid":false,"given":"Francisco","family":"Callejas-Hern\u00e1ndez","sequence":"additional","affiliation":[{"name":"Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8130-2750","authenticated-orcid":false,"given":"N\u00faria","family":"Giron\u00e8s","sequence":"additional","affiliation":[{"name":"Centro de Biolog\u00eda Molecular Severo Ochoa, Consejo Superior de Investigaciones Cient\u00edficas, Universidad Aut\u00f3noma de Madrid, Cantoblanco, 28049 Madrid, Spain"},{"name":"Instituto Sanitario de Investigaci\u00f3n Princesa, 28006 Madrid, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9223-5477","authenticated-orcid":false,"given":"Manuel","family":"Fresno","sequence":"additional","affiliation":[{"name":"Centro de Biolog\u00eda Molecular Severo Ochoa, Consejo Superior de Investigaciones Cient\u00edficas, Universidad Aut\u00f3noma de Madrid, Cantoblanco, 28049 Madrid, Spain"},{"name":"Instituto Sanitario de Investigaci\u00f3n Princesa, 28006 Madrid, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2025,1,12]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1017\/S0031182018000951","article-title":"Recent Advances in Trypanosomatid Research: Genome Organization, Expression, Metabolism, Taxonomy and Evolution","volume":"146","author":"Maslov","year":"2019","journal-title":"Parasitology"},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"466","DOI":"10.1016\/j.pt.2018.03.002","article-title":"Trypanosomatids Are Much More than Just Trypanosomes: Clues from the Expanded Family Tree","volume":"34","author":"Butenko","year":"2018","journal-title":"Trends Parasitol."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"229","DOI":"10.4161\/rna.7.2.11393","article-title":"RNA Editing in Kinetoplastids","volume":"7","author":"Hajduk","year":"2010","journal-title":"RNA Biol."},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"S40","DOI":"10.1017\/S0031182014000894","article-title":"Genome Evolution in Trypanosomatid Parasites","volume":"142","author":"Jackson","year":"2015","journal-title":"Parasitology"},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1186\/s13071-017-2204-7","article-title":"The Evolution of Trypanosomatid Taxonomy","volume":"10","author":"Kaufer","year":"2017","journal-title":"Parasit. 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