{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T19:45:17Z","timestamp":1791315917073,"version":"4.3.1"},"reference-count":313,"publisher":"MDPI AG","issue":"4","license":[{"start":{"date-parts":[[2020,4,20]],"date-time":"2020-04-20T00:00:00Z","timestamp":1587340800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Pathogens"],"abstract":"<jats:p>Emerging and re-emerging viral diseases are of great public health concern. The recent emergence of Severe Acute Respiratory Syndrome (SARS) related coronavirus (SARS-CoV-2) in December 2019 in China, which causes COVID-19 disease in humans, and its current spread to several countries, leading to the first pandemic in history to be caused by a coronavirus, highlights the significance of zoonotic viral diseases. Rift Valley fever, rabies, West Nile, chikungunya, dengue, yellow fever, Crimean-Congo hemorrhagic fever, Ebola, and influenza viruses among many other viruses have been reported from different African countries. The paucity of information, lack of knowledge, limited resources, and climate change, coupled with cultural traditions make the African continent a hotspot for vector-borne and zoonotic viral diseases, which may spread globally. Currently, there is no information available on the status of virus diseases in Africa. This systematic review highlights the available information about viral diseases, including zoonotic and vector-borne diseases, reported in Africa. The findings will help us understand the trend of emerging and re-emerging virus diseases within the African continent. The findings recommend active surveillance of viral diseases and strict implementation of One Health measures in Africa to improve human public health and reduce the possibility of potential pandemics due to zoonotic viruses.<\/jats:p>","DOI":"10.3390\/pathogens9040301","type":"journal-article","created":{"date-parts":[[2020,4,21]],"date-time":"2020-04-21T04:49:38Z","timestamp":1587444578000},"page":"301","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":71,"title":["Systematic Review of Important Viral Diseases in Africa in Light of the \u2018One Health\u2019 Concept"],"prefix":"10.3390","volume":"9","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4674-8255","authenticated-orcid":false,"given":"Ravendra P.","family":"Chauhan","sequence":"first","affiliation":[{"name":"School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban 4001, South Africa"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9056-6822","authenticated-orcid":false,"given":"Zelalem G.","family":"Dessie","sequence":"additional","affiliation":[{"name":"School of Mathematics, Statistics and Computer Science, University of KwaZulu-Natal, Durban 4001, South Africa"},{"name":"Department of Statistics, College of Science, Bahir Dar University, Bahir Dar 6000, Ethiopia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4899-1168","authenticated-orcid":false,"given":"Ayman","family":"Noreddin","sequence":"additional","affiliation":[{"name":"Infectious Diseases and Anti-Infective Therapy Research Group, Sharjah Medical Research Institute and College of Pharmacy, University of Sharjah, Sharjah 27272, UAE"},{"name":"Department of Medicine, School of Medicine, University of California, Irvine, CA 92868, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1056-4761","authenticated-orcid":false,"given":"Mohamed E.","family":"El Zowalaty","sequence":"additional","affiliation":[{"name":"Infectious Diseases and Anti-Infective Therapy Research Group, Sharjah Medical Research Institute and College of Pharmacy, University of Sharjah, Sharjah 27272, UAE"},{"name":"Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, SE 75185 Uppsala, Sweden"},{"name":"Division of Virology, Department of Infectious Diseases and St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS), St Jude Children Research Hospital, Memphis, TN 38105, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2020,4,20]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1089\/088922203765551773","article-title":"HIV type 1 infection in Pygmy hunter gatherers is from contact with Bantu rather than from nonhuman primates","volume":"19","author":"Ndembi","year":"2003","journal-title":"AIDS Res. Hum. Retrovir."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"64","DOI":"10.1016\/j.trstmh.2006.07.002","article-title":"Morbidity and mortality of wild animals in relation to outbreaks of Ebola haemorrhagic fever in Gabon, 1994\u20132003","volume":"101","author":"Lahm","year":"2007","journal-title":"Trans. R. Soc. Trop Med. Hyg."},{"key":"ref_3","unstructured":"World Health Organization (2020). Ebola Virus Disease- Democratic Republic of Congo, External Situation Report 82, WHO Regional Centre for Africa."},{"key":"ref_4","first-page":"89","article-title":"Monkeypox in Nigeria: A case report of re-emerged disease outbreak","volume":"6","author":"Okareh","year":"2018","journal-title":"J. Microbiol. Exp."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"865","DOI":"10.1637\/10171-041012-Reg.1","article-title":"Molecular analysis of the 2011 HPAI H5N2 outbreak in ostriches, South Africa","volume":"56","author":"Abolnik","year":"2012","journal-title":"Avian Dis."},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"3345","DOI":"10.1017\/S0950268817002503","article-title":"Molecular detection of influenza A(H1N1)pdm09 viruses with M genes from human pandemic strains among Nigerian pigs, 2013\u20132015: Implications and associated risk factors","volume":"145","author":"Adeola","year":"2017","journal-title":"Epidemiol. Infect."},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1016\/j.jcv.2011.08.008","article-title":"Crimean-Congo hemorrhagic fever serosurvey in at-risk professionals, Madagascar, 2008 and 2009","volume":"52","author":"Andriamandimby","year":"2011","journal-title":"J. Clin. Virol."},{"key":"ref_8","doi-asserted-by":"crossref","first-page":"e153","DOI":"10.1111\/tbed.12341","article-title":"West Nile Disease Epidemiology in North-West Africa: Bibliographical Review","volume":"63","author":"Benjelloun","year":"2016","journal-title":"Transbound Emerg. Dis."},{"key":"ref_9","doi-asserted-by":"crossref","unstructured":"Budasha, N.H., Gonzalez, J.P., Sebhatu, T.T., and Arnold, E. (2018). Rift Valley fever seroprevalence and abortion frequency among livestock of Kisoro district, South Western Uganda (2016): A prerequisite for zoonotic infection. BMC Vet. Res., 14.","DOI":"10.1186\/s12917-018-1596-8"},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1099\/vir.0.82352-0","article-title":"Identification of novel canine rabies virus clades in the Middle East and North Africa","volume":"88","author":"David","year":"2007","journal-title":"J. Gen. Virol."},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"394","DOI":"10.1637\/8703-031609-Review.1","article-title":"Avian Influenza Virus Surveillance and Wild Birds: Past and Present","volume":"54","author":"Krauss","year":"2010","journal-title":"Avian Dis."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1642\/0078-6594(2006)60[3:AIIWBS]2.0.CO;2","article-title":"Avian influenza in wild birds: Status as reservoirs, and risks to humans and agriculture","volume":"60","author":"Clark","year":"2006","journal-title":"Ornithol. Monogr."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1080\/03079459308418900","article-title":"Isolation of an influenza A virus from ostriches (Struthio camelus)","volume":"22","author":"Allwright","year":"1993","journal-title":"Avian Pathol."},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"2209","DOI":"10.3201\/eid2212.160639","article-title":"Highly Pathogenic Avian Influenza A(H5N1) Virus among Poultry, Ghana, 2015","volume":"22","author":"Asante","year":"2016","journal-title":"Emerg. Infect. Dis."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"2297","DOI":"10.1099\/vir.0.82939-0","article-title":"Molecular and antigenic evolution and geographical spread of H5N1 highly pathogenic avian influenza viruses in western Africa","volume":"88","author":"Ducatez","year":"2007","journal-title":"J. Gen. Virol."},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"S512","DOI":"10.1093\/infdis\/jix018","article-title":"Risk of Human Infections with Highly Pathogenic H5N2 and Low Pathogenic H7N1 Avian Influenza Strains During Outbreaks in Ostriches in South Africa","volume":"216","author":"Venter","year":"2017","journal-title":"J. Infect. Dis."},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"65","DOI":"10.4081\/gh.2009.211","article-title":"Spatio-temporal dynamics of global H5N1 outbreaks match bird migration patterns","volume":"4","author":"Si","year":"2009","journal-title":"Geospat Health"},{"key":"ref_18","first-page":"2887","article-title":"All across Africa: Highly individual migration routes of Eleonora\u2019s falcon","volume":"275","author":"Gschweng","year":"2008","journal-title":"Proc. Biol. Sci."},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"394","DOI":"10.1089\/vbz.2011.0926","article-title":"Detection of Avian Influenza Viruses in Wild Waterbirds in the Rift Valley of Kenya Using Fecal Sampling","volume":"13","author":"Ofula","year":"2013","journal-title":"Vector-Borne Zoonot"},{"key":"ref_20","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1016\/j.meegid.2012.09.021","article-title":"Co-circulation of pandemic 2009 H1N1, classical swine H1N1 and avian-like swine H1N1 influenza viruses in pigs in China","volume":"13","author":"Chen","year":"2013","journal-title":"Infect. Genet. Evol."},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1016\/S0378-1135(00)00164-4","article-title":"The epidemiology and evolution of influenza viruses in pigs","volume":"74","author":"Brown","year":"2000","journal-title":"Vet. Microbiol."},{"key":"ref_22","doi-asserted-by":"crossref","unstructured":"Hause, B.M., Ducatez, M., Collin, E.A., Ran, Z., Liu, R., Sheng, Z., Armien, A., Kaplan, B., Chakravarty, S., and Hoppe, A.D. (2013). Isolation of a novel swine influenza virus from Oklahoma in 2011 which is distantly related to human influenza C viruses. PLoS Pathog, 9.","DOI":"10.1371\/journal.ppat.1003176"},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1016\/j.vetmic.2013.11.003","article-title":"Detection and isolation of 2009 pandemic influenza A\/H1N1 virus in commercial piggery, Lagos Nigeria","volume":"168","author":"Meseko","year":"2014","journal-title":"Vet. Microbiol."},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"2195","DOI":"10.1099\/vir.0.044974-0","article-title":"Global transmission of influenza viruses from humans to swine","volume":"93","author":"Nelson","year":"2012","journal-title":"J. Gen. Virol."},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1111\/zph.12049","article-title":"Review of influenza A virus in swine worldwide: A call for increased surveillance and research","volume":"61","author":"Vincent","year":"2014","journal-title":"Zoonoses Public Health"},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1111\/j.1574-695X.1997.tb01056.x","article-title":"Influenza: Interspecies transmission and emergence of new pandemics","volume":"18","author":"Webster","year":"1997","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"ref_27","first-page":"105","article-title":"Influenza virus: Transmission between species and relevance to emergence of the next human pandemic","volume":"13","author":"Webster","year":"1997","journal-title":"Arch. Virol. Suppl."},{"key":"ref_28","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1093\/infdis\/175.1.7","article-title":"Transmission of swine influenza virus to humans after exposure to experimentally infected pigs","volume":"175","author":"Wentworth","year":"1997","journal-title":"J. Infect. Dis."},{"key":"ref_29","doi-asserted-by":"crossref","unstructured":"Munyua, P., Onyango, C., Mwasi, L., Waiboci, L.W., Arunga, G., Fields, B., Mott, J.A., Cardona, C.J., Kitala, P., and Nyaga, P.N. (2018). Identification and characterization of influenza A viruses in selected domestic animals in Kenya, 2010\u20132012. PLoS ONE, 13.","DOI":"10.1371\/journal.pone.0192721"},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"5900","DOI":"10.1038\/s41598-018-24371-6","article-title":"Evidence of exposure of domestic pigs to Highly Pathogenic Avian Influenza H5N1 in Nigeria","volume":"8","author":"Meseko","year":"2018","journal-title":"Sci. Rep."},{"key":"ref_31","first-page":"30227","article-title":"Detection of pandemic strain of influenza virus (A\/H1N1\/pdm09) in pigs, West Africa: Implications and considerations for prevention of future influenza pandemics at the source","volume":"5","author":"Adeola","year":"2015","journal-title":"Infect. Ecol. Epidemiol."},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1016\/j.vetmic.2011.09.003","article-title":"Pandemic A\/H1N1\/2009 influenza virus in swine, Cameroon, 2010","volume":"156","author":"Njabo","year":"2012","journal-title":"Vet. Microbiol."},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1016\/j.vetmic.2015.02.028","article-title":"Influenza A(H1N1)pdm09 virus in pigs, Togo, 2013","volume":"177","author":"Ducatez","year":"2015","journal-title":"Vet. Microbiol."},{"key":"ref_34","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1007\/s00705-017-3619-3","article-title":"Evidence of infection with avian, human, and swine influenza viruses in pigs in Cairo, Egypt","volume":"163","author":"Gomaa","year":"2018","journal-title":"Arch. Virol."},{"key":"ref_35","doi-asserted-by":"crossref","unstructured":"Oladipo, E.K., Awoyelu, E.H., and Oloke, J.K. (2018). Yellow fever, Dengue fever and West Nile viruses co-circulation in Ogbomoso. BioRxiv.","DOI":"10.1101\/265819"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"431","DOI":"10.20506\/rst.34.2.2369","article-title":"West Nile virus","volume":"34","author":"McVey","year":"2015","journal-title":"Rev. Sci Tech."},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"392","DOI":"10.3201\/eid0804.010217","article-title":"Introduction of West Nile virus in the Middle East by migrating white storks","volume":"8","author":"Malkinson","year":"2002","journal-title":"Emerg Infect. Dis"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1016\/j.actatropica.2018.01.015","article-title":"Rift Valley Fever in Egypt and other African countries: Historical review, recent outbreaks and possibility of disease occurrence in Egypt","volume":"181","author":"Kenawy","year":"2018","journal-title":"Acta Trop"},{"key":"ref_39","first-page":"576","article-title":"Congo-Crimean haemorrhagic fever in South Africa. Report of a fatal case in the Transvaal","volume":"62","author":"Gear","year":"1982","journal-title":"S. Afr. Med. J."},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"W49","DOI":"10.1371\/journal.pmed.1000100","article-title":"The PRISMA Statement for Reporting Systematic Reviews and Meta-Analyses of Studies That Evaluate Health Care Interventions: Explanation and Elaboration","volume":"6","author":"Liberati","year":"2009","journal-title":"PLoS Med."},{"key":"ref_41","doi-asserted-by":"crossref","unstructured":"Melade, J., McCulloch, S., Ramasindrazana, B., Lagadec, E., Turpin, M., Pascalis, H., Goodman, S.M., Markotter, W., and Dellagi, K. (2016). Serological Evidence of Lyssaviruses among Bats on Southwestern Indian Ocean Islands. PLoS ONE, 11.","DOI":"10.1371\/journal.pone.0160553"},{"key":"ref_42","doi-asserted-by":"crossref","unstructured":"Cosby, M.T., Pimentel, G., Nevin, R.L., Fouad Ahmed, S., Klena, J.D., Amir, E., Younan, M., Browning, R., and Sebeny, P.J. (2013). Outbreak of H3N2 influenza at a US military base in Djibouti during the H1N1 pandemic of 2009. PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0082089"},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1186\/s41256-016-0016-5","article-title":"Dengue fever outbreaks in Eritrea, 2005\u20132015: A case for strengthening surveillance, control and reporting","volume":"1","author":"Usman","year":"2016","journal-title":"Glob. Health Res. Policy"},{"key":"ref_44","doi-asserted-by":"crossref","unstructured":"Hampson, K., Coudeville, L., Lembo, T., Sambo, M., Kieffer, A., Attlan, M., Barrat, J., Blanton, J.D., Briggs, D.J., and Cleaveland, S. (2015). Correction: Estimating the global burden of endemic canine rabies. PLoS Negl. Trop Dis, 9.","DOI":"10.1371\/journal.pntd.0003786"},{"key":"ref_45","doi-asserted-by":"crossref","unstructured":"Jemberu, W.T., Molla, W., Almaw, G., and Alemu, S. (2013). Incidence of rabies in humans and domestic animals and people\u2019s awareness in North Gondar Zone, Ethiopia. PLoS Negl. Trop Dis., 7.","DOI":"10.1371\/journal.pntd.0002216"},{"key":"ref_46","first-page":"69","article-title":"A study on the prevalence of animal rabies in Addis Ababa during 1999\u20132002","volume":"7","author":"Paulos","year":"2002","journal-title":"Ethiop. Vet. J."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"1370","DOI":"10.3201\/eid2008.140590","article-title":"Geographic distribution of MERS coronavirus among dromedary camels, Africa","volume":"20","author":"Reusken","year":"2014","journal-title":"Emerg Infect Dis."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"2739","DOI":"10.1007\/s00705-016-2974-9","article-title":"First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia","volume":"161","author":"Sisay","year":"2016","journal-title":"Arch. Virol."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"1556","DOI":"10.3201\/eid2309.170342","article-title":"Serologic Evidence for Influenza C and D Virus among Ruminants and Camelids, Africa, 1991\u20132015","volume":"23","author":"Salem","year":"2017","journal-title":"Emerg Infect. Dis."},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"38","DOI":"10.4269\/ajtmh.2010.09-0463","article-title":"Pathologic studies on suspect animal and human cases of Rift Valley fever from an outbreak in Eastern Africa, 2006\u20132007","volume":"83","author":"Shieh","year":"2010","journal-title":"Am. J. Trop Med. Hyg."},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"887","DOI":"10.1007\/s00705-016-2819-6","article-title":"Metagenomic analysis demonstrates the diversity of the fecal virome in asymptomatic pigs in East Africa","volume":"161","author":"Amimo","year":"2016","journal-title":"Arch. Virol."},{"key":"ref_52","doi-asserted-by":"crossref","unstructured":"Caini, S., Spreeuwenberg, P., Kusznierz, G.F., Rudi, J.M., Owen, R., Pennington, K., Wangchuk, S., Gyeltshen, S., Ferreira de Almeida, W.A., and Pessanha Henriques, C.M. (2018). Distribution of influenza virus types by age using case-based global surveillance data from twenty-nine countries, 1999\u20132014. BMC Infect. Dis., 18.","DOI":"10.1186\/s12879-018-3181-y"},{"key":"ref_53","doi-asserted-by":"crossref","unstructured":"Apopo, A.A., Kariithi, H.M., Ateya, L.O., Binepal, Y.S., Sirya, J.H., Dulu, T.D., Welch, C.N., Hernandez, S.M., and Afonso, C.L. (2019). A retrospective study of Newcastle disease in Kenya. Trop. Anim. Health Prod.","DOI":"10.1007\/s11250-019-02059-x"},{"key":"ref_54","doi-asserted-by":"crossref","first-page":"484","DOI":"10.1007\/s12250-018-0076-4","article-title":"Genetic Evidence of Middle East Respiratory Syndrome Coronavirus (MERS-Cov) and Widespread Seroprevalence among Camels in Kenya","volume":"33","author":"Ommeh","year":"2018","journal-title":"Virol. Sin."},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1186\/s12985-018-0992-9","article-title":"Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar","volume":"15","author":"Raharinosy","year":"2018","journal-title":"Virol. J."},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1051\/vetres:2008023","article-title":"Bluetongue virus: Virology, pathogenesis and immunity","volume":"39","author":"Mertens","year":"2008","journal-title":"Vet. Res."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1016\/j.vetmic.2015.02.009","article-title":"Detection in and circulation of Bluetongue virus among domestic ruminants in Madagascar","volume":"176","author":"Andriamandimby","year":"2015","journal-title":"Vet. Microbiol."},{"key":"ref_58","doi-asserted-by":"crossref","unstructured":"Chevalier, V., Rakotondrafara, T., Jourdan, M., Heraud, J.M., Andriamanivo, H.R., Durand, B., Ravaomanana, J., Rollin, P.E., and Rakotondravao, R. (2011). An unexpected recurrent transmission of Rift Valley fever virus in cattle in a temperate and mountainous area of Madagascar. PLoS Negl. Trop Dis., 5.","DOI":"10.1371\/journal.pntd.0001423"},{"key":"ref_59","doi-asserted-by":"crossref","first-page":"329","DOI":"10.4269\/ajtmh.2012.12-0615","article-title":"High prevalence of hepatitis E in humans and pigs and evidence of genotype-3 virus in swine, Madagascar","volume":"88","author":"Temmam","year":"2013","journal-title":"Am. J. Trop Med. Hyg."},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"2770","DOI":"10.1038\/ncomms3770","article-title":"Continent-wide panmixia of an African fruit bat facilitates transmission of potentially zoonotic viruses","volume":"4","author":"Peel","year":"2013","journal-title":"Nat. Commun."},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1017\/S0022172400062732","article-title":"A four-year survey of African swine fever in Malawi","volume":"95","author":"Haresnape","year":"1985","journal-title":"J. Hyg. (Lond.)"},{"key":"ref_62","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1017\/S0950268800029332","article-title":"Isolation of African swine fever virus from ticks of the Ornithodoros moubata complex (Ixodoidea: Argasidae) collected within the African swine fever enzootic area of Malawi","volume":"101","author":"Haresnape","year":"1988","journal-title":"Epidemiol. Infect."},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"915","DOI":"10.3201\/eid2205.151002","article-title":"Seroepidemiologic Screening for Zoonotic Viral Infections, Maputo, Mozambique","volume":"22","author":"Gudo","year":"2016","journal-title":"Emerg. Infect. Dis."},{"key":"ref_64","doi-asserted-by":"crossref","unstructured":"Tivane, A., Daniels, R., Nguenha, N., Machalele, L., Nacoto, A., Pale, M., Mateonane, E., Mavale, S., Chilundo, J., and Muteto, D. (2018). Antigenic and genetic characterization of influenza viruses isolated in Mozambique during the 2015 season. PLoS ONE, 13.","DOI":"10.1371\/journal.pone.0201248"},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1016\/0035-9203(85)90323-2","article-title":"Hepatitis B virus circulation in three different villages of Somalia","volume":"79","author":"Sebastiani","year":"1985","journal-title":"Trans. R. Soc. Trop Med. Hyg."},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/0035-9203(94)90495-2","article-title":"Low risk of sexual transmission of hepatitis C virus in Somalia","volume":"88","author":"Watts","year":"1994","journal-title":"Trans. R. Soc. Trop Med. Hyg."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"1348","DOI":"10.1128\/JVI.01202-12","article-title":"Novel, potentially zoonotic paramyxoviruses from the African straw-colored fruit bat Eidolon helvum","volume":"87","author":"Baker","year":"2013","journal-title":"J. Virol."},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1016\/S0378-1135(99)00207-2","article-title":"Serological and demographic evidence for domestic dogs as a source of canine distemper virus infection for Serengeti wildlife","volume":"72","author":"Cleaveland","year":"2000","journal-title":"Vet. Microbiol."},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"441","DOI":"10.1038\/379441a0","article-title":"A canine distemper virus epidemic in Serengeti lions (Panthera leo)","volume":"379","author":"Munson","year":"1996","journal-title":"Nature"},{"key":"ref_70","doi-asserted-by":"crossref","unstructured":"Mtui-Malamsha, N., Sallu, R., Mahiti, G.R., Mohamed, H., OleNeselle, M., Rubegwa, B., Swai, E.S., Makungu, S., Otieno, E.G., and Lupindu, A.M. (2019). Ecological and Epidemiological Findings Associated with Zoonotic Rabies Outbreaks and Control in Moshi, Tanzania, 2017\u20132018. Int. J. Environ. Res. Public Health, 16.","DOI":"10.3390\/ijerph16162816"},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1089\/vbz.2008.0167","article-title":"Human Ebola outbreak resulting from direct exposure to fruit bats in Luebo, Democratic Republic of Congo, 2007","volume":"9","author":"Leroy","year":"2009","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_72","doi-asserted-by":"crossref","unstructured":"Palmenberg, A.C. (2017). Rhinovirus C, Asthma, and Cell Surface Expression of Virus Receptor CDHR3. J. Virol., 91.","DOI":"10.1128\/JVI.00072-17"},{"key":"ref_73","doi-asserted-by":"crossref","first-page":"267","DOI":"10.3201\/eid2402.170778","article-title":"Lethal Respiratory Disease Associated with Human Rhinovirus C in Wild Chimpanzees, Uganda, 2013","volume":"24","author":"Scully","year":"2018","journal-title":"Emerg. Infect. Dis."},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/cid\/ciy486","article-title":"Novel Orthobunyavirus Identified in the Cerebrospinal Fluid of a Ugandan Child with Severe Encephalopathy","volume":"68","author":"Edridge","year":"2019","journal-title":"Clin. Infect. Dis."},{"key":"ref_75","doi-asserted-by":"crossref","first-page":"471","DOI":"10.4269\/ajtmh.1940.s1-20.471","article-title":"A neurotropic virus isolated from the blood of a native of Uganda","volume":"20","author":"Smithburn","year":"1940","journal-title":"Am. J. Trop. Med. Hyg."},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"58","DOI":"10.7774\/cevr.2014.3.1.58","article-title":"Zoonotic encephalitides caused by arboviruses: Transmission and epidemiology of alphaviruses and flaviviruses","volume":"3","author":"Go","year":"2014","journal-title":"Clin Exp Vaccine Res."},{"key":"ref_77","doi-asserted-by":"crossref","first-page":"486","DOI":"10.1111\/irv.12401","article-title":"Whole-genome analysis of influenza A(H1N1)pdm09 viruses isolated in Uganda from 2009 to 2011","volume":"10","author":"Byarugaba","year":"2016","journal-title":"Influenza Other Respir. Viruses"},{"key":"ref_78","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1016\/j.meegid.2018.10.010","article-title":"Highly pathogenic avian influenza H5N8 Clade 2.3.4.4B virus in Uganda, 2017","volume":"66","author":"Ndumu","year":"2018","journal-title":"Infect. Genet Evol."},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1111\/tbed.12635","article-title":"Co-circulation of multiple genotypes of African swine fever viruses among domestic pigs in Zambia (2013\u20132015)","volume":"65","author":"Simulundu","year":"2018","journal-title":"Transbound Emerg Dis."},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.4102\/ojvr.v85i1.1562","article-title":"Genetic characterisation of African swine fever virus from 2017 outbreaks in Zambia: Identification of p72 genotype II variants in domestic pigs","volume":"85","author":"Simulundu","year":"2018","journal-title":"Onderstepoort J. Vet. Res."},{"key":"ref_81","doi-asserted-by":"crossref","first-page":"6724","DOI":"10.1128\/JVI.00573-16","article-title":"Arteriviruses, Pegiviruses, and Lentiviruses Are Common among Wild African Monkeys","volume":"90","author":"Bailey","year":"2016","journal-title":"J. Virol."},{"key":"ref_82","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1111\/tbed.12888","article-title":"First isolation of West Nile virus in Zambia from mosquitoes","volume":"65","author":"Orba","year":"2018","journal-title":"Transbound Emerg Dis."},{"key":"ref_83","doi-asserted-by":"crossref","first-page":"803","DOI":"10.4314\/ahs.v15i3.14","article-title":"Seroprevalence of West Nile Virus specific IgG and IgM antibodies in North-Western and Western provinces of Zambia","volume":"15","author":"Siziya","year":"2015","journal-title":"Afr. Health Sci."},{"key":"ref_84","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1007\/s00705-018-4068-3","article-title":"First genetic detection and characterization of canine parvovirus from diarrheic dogs in Zambia","volume":"164","author":"Kapiya","year":"2019","journal-title":"Arch. Virol."},{"key":"ref_85","doi-asserted-by":"crossref","unstructured":"Muleya, W., Chambaro, H.M., Sasaki, M., Gwenhure, L.F., Mwenechanya, R., Kajihara, M., Saasa, N., Mupila, Z., Mori-Kajihara, A., and Qiu, Y. (2019). Genetic diversity of rabies virus in different host species and geographic regions of Zambia and Zimbabwe. Virus Genes.","DOI":"10.1007\/s11262-019-01682-y"},{"key":"ref_86","doi-asserted-by":"crossref","first-page":"1517","DOI":"10.1007\/s00705-009-0467-9","article-title":"Characterization of H3N6 avian influenza virus isolated from a wild white pelican in Zambia","volume":"154","author":"Simulundu","year":"2009","journal-title":"Arch. Virol."},{"key":"ref_87","doi-asserted-by":"crossref","first-page":"1416","DOI":"10.1099\/vir.0.030403-0","article-title":"Characterization of influenza A viruses isolated from wild waterfowl in Zambia","volume":"92","author":"Simulundu","year":"2011","journal-title":"J. Gen. Virol."},{"key":"ref_88","doi-asserted-by":"crossref","first-page":"2165","DOI":"10.1007\/s00705-019-04302-0","article-title":"Serological evidence of Zika virus infection in non-human primates in Zambia","volume":"164","author":"Wastika","year":"2019","journal-title":"Arch. Virol."},{"key":"ref_89","doi-asserted-by":"crossref","first-page":"805","DOI":"10.1007\/s10393-017-1282-5","article-title":"Avian Viral Pathogens in Swallows, Zimbabwe: Infectious Diseases in Hirundinidae: A Risk to Swallow?","volume":"14","author":"Caron","year":"2017","journal-title":"Ecohealth"},{"key":"ref_90","doi-asserted-by":"crossref","unstructured":"Coetzer, A., Gwenhure, L., Makaya, P., Markotter, W., and Nel, L. (2019). Epidemiological aspects of the persistent transmission of rabies during an outbreak (2010\u20132017) in Harare, Zimbabwe. PLoS ONE, 14.","DOI":"10.1371\/journal.pone.0210018"},{"key":"ref_91","doi-asserted-by":"crossref","first-page":"1446","DOI":"10.3201\/eid1809.111296","article-title":"Surveillance for influenza viruses in poultry and swine, west Africa, 2006\u20132008","volume":"18","author":"Kouakou","year":"2012","journal-title":"Emerg. Infect. Dis."},{"key":"ref_92","doi-asserted-by":"crossref","first-page":"893","DOI":"10.20506\/rst.33.3.2327","article-title":"Prevalence of Rift Valley fever in domestic ruminants in the central and northern regions of Burkina Faso","volume":"33","author":"Boussini","year":"2014","journal-title":"Rev. Sci. Tech."},{"key":"ref_93","doi-asserted-by":"crossref","first-page":"490","DOI":"10.1111\/irv.12539","article-title":"Epidemiology and molecular characterization of influenza viruses in Burkina Faso, sub-Saharan Africa","volume":"12","author":"Sanou","year":"2018","journal-title":"Influenza Other Respir. Viruses"},{"key":"ref_94","doi-asserted-by":"crossref","first-page":"2118","DOI":"10.3201\/eid2312.171294","article-title":"Influenza A(H9N2) Virus, Burkina Faso","volume":"23","author":"Zecchin","year":"2017","journal-title":"Emerg. Infect. Dis."},{"key":"ref_95","doi-asserted-by":"crossref","first-page":"946","DOI":"10.4269\/ajtmh.12-0401","article-title":"A subregional analysis of epidemiologic and genetic characteristics of influenza A(H1N1)pdm09 in Africa: Senegal, Cape Verde, Mauritania, and Guinea, 2009\u20132010","volume":"88","author":"Dia","year":"2013","journal-title":"Am. J. Trop Med. Hyg."},{"key":"ref_96","first-page":"633","article-title":"Human infection with monkeypox virus: Laboratory investigation of six cases in West Africa","volume":"46","author":"Lourie","year":"1972","journal-title":"Bull. World Health Organ."},{"key":"ref_97","doi-asserted-by":"crossref","first-page":"241","DOI":"10.3389\/fpubh.2018.00241","article-title":"Emergence of Monkeypox as the Most Important Orthopoxvirus Infection in Humans","volume":"6","author":"Sklenovska","year":"2018","journal-title":"Front. Public Health"},{"key":"ref_98","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1099\/vir.0.003939-0","article-title":"Frequent foamy virus infection in free-living chimpanzees of the Tai National Park (Cote d\u2019Ivoire)","volume":"90","author":"Morozov","year":"2009","journal-title":"J. Gen. Virol."},{"key":"ref_99","doi-asserted-by":"crossref","first-page":"2488","DOI":"10.1097\/01.aids.0000432443.22684.50","article-title":"Evidence for continuing cross-species transmission of SIVsmm to humans: Characterization of a new HIV-2 lineage in rural Cote d\u2019Ivoire","volume":"27","author":"Ayouba","year":"2013","journal-title":"AIDS"},{"key":"ref_100","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/j.rvsc.2015.07.015","article-title":"Prevalence of Newcastle disease virus and infectious bronchitis virus in avian influenza negative birds from live bird markets and backyard and commercial farms in Ivory-Coast","volume":"102","author":"Kouakou","year":"2015","journal-title":"Res. Vet. Sci."},{"key":"ref_101","doi-asserted-by":"crossref","unstructured":"Bittaye, M., Idoko, P., Ekele, B.A., Obed, S.A., and Nyan, O. (2019). Hepatitis B virus sero-prevalence amongst pregnant women in the Gambia. BMC Infect Dis., 19.","DOI":"10.1186\/s12879-019-3883-9"},{"key":"ref_102","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1111\/zph.12210","article-title":"Antigenic Detection of Human Strain of Influenza Virus A (H3N2) in Swine Populations at Three Locations in Nigeria and Ghana during the Dry Early Months of 2014","volume":"63","author":"Adeola","year":"2016","journal-title":"Zoonoses Public Health"},{"key":"ref_103","doi-asserted-by":"crossref","first-page":"232","DOI":"10.1111\/zph.12559","article-title":"Syndromic survey and molecular analysis of influenza viruses at the human-swine interface in two West African cosmopolitan cities suggest the possibility of bidirectional interspecies transmission","volume":"66","author":"Adeola","year":"2019","journal-title":"Zoonoses Public Health"},{"key":"ref_104","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1080\/03079457.2019.1624687","article-title":"Avian influenza H9N2 subtype in Ghana: Virus characterization and evidence of co-infection","volume":"48","author":"Awuni","year":"2019","journal-title":"Avian Pathol."},{"key":"ref_105","first-page":"166","article-title":"The first cases of Lassa fever in Ghana","volume":"46","author":"Dzotsi","year":"2012","journal-title":"Ghana Med. J."},{"key":"ref_106","doi-asserted-by":"crossref","first-page":"281","DOI":"10.11604\/pamj.2017.28.281.14218","article-title":"Level and pattern of human rabies and dog bites in Techiman Municipality in the Middle Belt of Ghana: A six year retrospective records review","volume":"28","author":"Punguyire","year":"2017","journal-title":"Pan. Afr. Med. J."},{"key":"ref_107","doi-asserted-by":"crossref","unstructured":"Bonney, J.H.K., Hayashi, T., Dadzie, S., Agbosu, E., Pratt, D., Nyarko, S., Asiedu-Bekoe, F., Ido, E., Sarkodie, B., and Ohta, N. (2018). Molecular detection of dengue virus in patients suspected of Ebola virus disease in Ghana. PLoS ONE, 13.","DOI":"10.1371\/journal.pone.0208907"},{"key":"ref_108","doi-asserted-by":"crossref","unstructured":"Ankrah, G.A., Bonney, J.H.K., Agbosu, E.E., Pratt, D., and Adiku, T.K. (2019). Serological evidence of Zika virus infection in febrile patients at Greater Accra Regional Hospital, Accra Ghana. BMC Res. Notes, 12.","DOI":"10.1186\/s13104-019-4371-4"},{"key":"ref_109","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.1099\/vir.0.067199-0","article-title":"The 2014 Ebola virus disease outbreak in West Africa","volume":"95","author":"Gatherer","year":"2014","journal-title":"J. Gen. Virol."},{"key":"ref_110","doi-asserted-by":"crossref","unstructured":"International Ebola Response, T., Agua-Agum, J., Ariyarajah, A., Aylward, B., Bawo, L., Bilivogui, P., Blake, I.M., Brennan, R.J., Cawthorne, A., and Cleary, E. (2016). Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study. PLoS Med., 13.","DOI":"10.1371\/journal.pmed.1002170"},{"key":"ref_111","first-page":"513","article-title":"Ebola Virus Persistence in Breast Milk After No Reported Illness: A Likely Source of Virus Transmission From Mother to Child","volume":"64","author":"Sissoko","year":"2017","journal-title":"Clin. Infect. Dis."},{"key":"ref_112","doi-asserted-by":"crossref","first-page":"2448","DOI":"10.1056\/NEJMoa1509773","article-title":"Molecular Evidence of Sexual Transmission of Ebola Virus","volume":"373","author":"Mate","year":"2015","journal-title":"N. Engl. J. Med."},{"key":"ref_113","doi-asserted-by":"crossref","first-page":"2149","DOI":"10.3201\/eid2212.160847","article-title":"Unusual Ebola Virus Chain of Transmission, Conakry, Guinea, 2014\u20132015","volume":"22","author":"Keita","year":"2016","journal-title":"Emerg. Infect. Dis."},{"key":"ref_114","doi-asserted-by":"crossref","first-page":"1353","DOI":"10.1093\/cid\/ciw601","article-title":"Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor with Virus Persistence in Seminal Fluid for More Than 500 Days","volume":"63","author":"Diallo","year":"2016","journal-title":"Clin. Infect. Dis."},{"key":"ref_115","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1089\/15303660160025903","article-title":"Lassa fever in Guinea: I. Epidemiology of human disease and clinical observations","volume":"1","author":"Bausch","year":"2001","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_116","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1089\/15303660160025912","article-title":"Lassa fever in Guinea: II. Distribution and prevalence of Lassa virus infection in small mammals","volume":"1","author":"Demby","year":"2001","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_117","doi-asserted-by":"crossref","unstructured":"van Tienen, C., de Silva, T.I., Alcantara, L.C., Onyango, C.O., Jarju, S., Goncalves, N., Vincent, T., Aaby, P., Whittle, H., and Schim van der Loeff, M. (2012). Molecular epidemiology of endemic human T-lymphotropic virus type 1 in a rural community in Guinea-Bissau. PLoS Negl. Trop Dis., 6.","DOI":"10.1371\/journal.pntd.0001690"},{"key":"ref_118","doi-asserted-by":"crossref","first-page":"e1600378","DOI":"10.1126\/sciadv.1600378","article-title":"Reduced evolutionary rate in reemerged Ebola virus transmission chains","volume":"2","author":"Blackley","year":"2016","journal-title":"Sci. Adv."},{"key":"ref_119","doi-asserted-by":"crossref","first-page":"306","DOI":"10.15585\/mmwr.mm6710a5","article-title":"Emergence of Monkeypox-West and Central Africa, 1970\u20132017","volume":"67","author":"Durski","year":"2018","journal-title":"MMWR Morb. Mortal. Wkly Rep."},{"key":"ref_120","doi-asserted-by":"crossref","unstructured":"Safronetz, D., Sogoba, N., Lopez, J.E., Maiga, O., Dahlstrom, E., Zivcec, M., Feldmann, F., Haddock, E., Fischer, R.J., and Anderson, J.M. (2013). Geographic distribution and genetic characterization of Lassa virus in sub-Saharan Mali. PLoS Negl. Trop Dis., 7.","DOI":"10.1371\/journal.pntd.0002582"},{"key":"ref_121","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1038\/nature09575","article-title":"Impacts of biodiversity on the emergence and transmission of infectious diseases","volume":"468","author":"Keesing","year":"2010","journal-title":"Nature"},{"key":"ref_122","doi-asserted-by":"crossref","first-page":"976","DOI":"10.1111\/j.1469-0691.2011.03725.x","article-title":"A seroepidemiological study of pandemic A\/H1N1(2009) influenza in a rural population of Mali","volume":"18","author":"Koita","year":"2012","journal-title":"Clin. Microbiol. Infect."},{"key":"ref_123","doi-asserted-by":"crossref","first-page":"ofx087","DOI":"10.1093\/ofid\/ofx087","article-title":"Detection of the Northeastern African Rift Valley Fever Virus Lineage During the 2015 Outbreak in Mauritania","volume":"4","author":"Bob","year":"2017","journal-title":"Open Forum Infect Dis."},{"key":"ref_124","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1002\/vms3.135","article-title":"First occurrence of Rift Valley fever outbreak in Niger, 2016","volume":"5","author":"Lagare","year":"2019","journal-title":"Vet. Med. Sci."},{"key":"ref_125","doi-asserted-by":"crossref","first-page":"670","DOI":"10.1002\/jmv.23520","article-title":"Serologic evidence of avian influenza virus infections among Nigerian agricultural workers","volume":"85","author":"Okoye","year":"2013","journal-title":"J. Med. Virol."},{"key":"ref_126","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1007\/s10393-014-1004-1","article-title":"Genetic Adaptation of Influenza A Viruses in Domestic Animals and Their Potential Role in Interspecies Transmission: A Literature Review","volume":"13","author":"Munoz","year":"2016","journal-title":"Ecohealth"},{"key":"ref_127","first-page":"147","article-title":"Prevalence of antibodies to influenza viruses among handlers of live pigs at three locations in Ibadan, Nigeria","volume":"46","author":"Adeola","year":"2010","journal-title":"Vet. Ital."},{"key":"ref_128","doi-asserted-by":"crossref","first-page":"102","DOI":"10.11604\/pamj.2013.16.102.1450","article-title":"Prevalence and correlates of influenza-A in piggery workers and pigs in two communities in Lagos, Nigeria","volume":"16","author":"Awosanya","year":"2013","journal-title":"Pan. Afr. Med. J."},{"key":"ref_129","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1016\/j.vetmic.2014.12.022","article-title":"Serological evidence of pandemic (H1N1) 2009 virus in pigs, West and Central Africa","volume":"176","author":"Snoeck","year":"2015","journal-title":"Vet. Microbiol."},{"key":"ref_130","first-page":"111","article-title":"Serological survey for emerging canine H3N8 and H3N2 influenza viruses in pet and village dogs in Nigeria","volume":"43","author":"Oluwayelu","year":"2014","journal-title":"Afr. J. Med. Med. Sci."},{"key":"ref_131","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1016\/S1473-3099(18)30043-4","article-title":"Genomic characterisation of human monkeypox virus in Nigeria","volume":"18","author":"Faye","year":"2018","journal-title":"Lancet Infect Dis."},{"key":"ref_132","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1002\/jmv.25348","article-title":"A review of the monkeypox virus and a recent outbreak of skin rash disease in Nigeria","volume":"91","author":"Kabuga","year":"2019","journal-title":"J. Med. Virol."},{"key":"ref_133","unstructured":"World Health Organization (2020, April 13). Weekly Bulletin on Outbreaks and Other Emergencies. Available online: https:\/\/apps.who.int\/iris\/handle\/10665\/272981."},{"key":"ref_134","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1080\/00034983.1975.11686983","article-title":"Arthropod-borne viral infections of man in Nigeria, 1964\u20131970","volume":"69","author":"Moore","year":"1975","journal-title":"Ann. Trop. Med. Parasitol."},{"key":"ref_135","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1080\/15321819.2018.1514507","article-title":"Hepatitis E Virus infection seroprevalence and the associated risk factors in animals raised in Ibadan, Nigeria","volume":"39","author":"Antia","year":"2018","journal-title":"J. Immunoass. Immunochem."},{"key":"ref_136","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1016\/j.jegh.2018.05.001","article-title":"Serological Detection of Ebola Virus Exposures in Native Non-human Primates of Southern Nigeria","volume":"8","author":"Ogunro","year":"2018","journal-title":"J. Epidemiol. Glob. Health"},{"key":"ref_137","doi-asserted-by":"crossref","first-page":"2031","DOI":"10.1007\/s00705-019-04288-9","article-title":"Genomic comparison of Newcastle disease viruses isolated in Nigeria between 2002 and 2015 reveals circulation of highly diverse genotypes and spillover into wild birds","volume":"164","author":"Welch","year":"2019","journal-title":"Arch. Virol."},{"key":"ref_138","doi-asserted-by":"crossref","unstructured":"Shittu, I., Sharma, P., Joannis, T.M., Volkening, J.D., Odaibo, G.N., Olaleye, D.O., Williams-Coplin, D., Solomon, P., Abolnik, C., and Miller, P.J. (2016). Complete Genome Sequence of a Genotype XVII Newcastle Disease Virus, Isolated from an Apparently Healthy Domestic Duck in Nigeria. Genome Announc., 4.","DOI":"10.1128\/genomeA.01716-15"},{"key":"ref_139","doi-asserted-by":"crossref","first-page":"934","DOI":"10.1093\/jmedent\/31.6.934","article-title":"Isolations of West Nile and Bagaza viruses from mosquitoes (Diptera: Culicidae) in central Senegal (Ferlo)","volume":"31","author":"Zeller","year":"1994","journal-title":"J. Med. Entomol."},{"key":"ref_140","doi-asserted-by":"crossref","first-page":"216","DOI":"10.1196\/annals.1373.026","article-title":"Serological assessment of West Nile fever virus activity in the pastoral system of Ferlo, Senegal","volume":"1081","author":"Chevalier","year":"2006","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"ref_141","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1089\/vbz.2008.0130","article-title":"Predicting West Nile virus seroprevalence in wild birds in Senegal","volume":"9","author":"Chevalier","year":"2009","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_142","doi-asserted-by":"crossref","unstructured":"Seck, M.C., Badiane, A.S., Thwing, J., Moss, D., Fall, F.B., Gomis, J.F., Deme, A.B., Diongue, K., Sy, M., and Mbaye, A. (2019). Serological Data Shows Low Levels of Chikungunya Exposure in Senegalese Nomadic Pastoralists. Pathogens, 8.","DOI":"10.3390\/pathogens8030113"},{"key":"ref_143","doi-asserted-by":"crossref","first-page":"504","DOI":"10.3201\/eid2003.131174","article-title":"Rift Valley fever in Kedougou, southeastern Senegal, 2012","volume":"20","author":"Sow","year":"2014","journal-title":"Emerg. Infect. Dis."},{"key":"ref_144","doi-asserted-by":"crossref","first-page":"vew016","DOI":"10.1093\/ve\/vew016","article-title":"Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases","volume":"2","author":"Arias","year":"2016","journal-title":"Virus Evol."},{"key":"ref_145","doi-asserted-by":"crossref","first-page":"681","DOI":"10.15585\/mmwr.mm6526a4","article-title":"Notes from The Field: Ebola Virus Disease Cluster-Northern Sierra Leone, January 2016","volume":"65","author":"Alpren","year":"2016","journal-title":"MMWR Morb. Mortal. Wkly Rep."},{"key":"ref_146","doi-asserted-by":"crossref","first-page":"S287","DOI":"10.1093\/infdis\/jiy280","article-title":"Ebola Virus Transmission Caused by Persistently Infected Survivors of the 2014\u20132016 Outbreak in West Africa","volume":"218","author":"Subissi","year":"2018","journal-title":"J. Infect. Dis."},{"key":"ref_147","doi-asserted-by":"crossref","first-page":"1516","DOI":"10.1016\/j.cell.2015.06.007","article-title":"Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone","volume":"161","author":"Park","year":"2015","journal-title":"Cell"},{"key":"ref_148","doi-asserted-by":"crossref","first-page":"784","DOI":"10.3201\/eid2504.180958","article-title":"Early Genomic Detection of Cosmopolitan Genotype of Dengue Virus Serotype 2, Angola, 2018","volume":"25","author":"Hill","year":"2019","journal-title":"Emerg. Infect. Dis."},{"key":"ref_149","doi-asserted-by":"crossref","first-page":"69","DOI":"10.11604\/pamj.2014.19.69.4580","article-title":"Genotypes and subtypes of hepatitis C virus in Burundi: A particularity in sub-Saharan Africa","volume":"19","author":"Ntagirabiri","year":"2014","journal-title":"Pan. Afr. Med. J."},{"key":"ref_150","doi-asserted-by":"crossref","unstructured":"Roy, S., Vandenberghe, L.H., Kryazhimskiy, S., Grant, R., Calcedo, R., Yuan, X., Keough, M., Sandhu, A., Wang, Q., and Medina-Jaszek, C.A. (2009). Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates. PLoS Pathog., 5.","DOI":"10.1371\/journal.ppat.1000503"},{"key":"ref_151","doi-asserted-by":"crossref","unstructured":"Larison, B., Njabo, K.Y., Chasar, A., Fuller, T., Harrigan, R.J., and Smith, T.B. (2014). Spillover of pH1N1 to swine in Cameroon: An investigation of risk factors. BMC Vet. Res., 10.","DOI":"10.1186\/1746-6148-10-55"},{"key":"ref_152","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.3201\/eid2407.172120","article-title":"Highly Pathogenic Avian Influenza A(H5N8) Virus, Cameroon, 2017","volume":"24","author":"Wade","year":"2018","journal-title":"Emerg. Infect. Dis."},{"key":"ref_153","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1186\/s12985-018-0977-8","article-title":"Serological evidence of Rift VAlley fever Phlebovirus and Crimean-Congo hemorrhagic fever orthonairovirus infections among pygmies in the east region of Cameroon","volume":"15","author":"Demanou","year":"2018","journal-title":"Virol. J."},{"key":"ref_154","doi-asserted-by":"crossref","first-page":"4480","DOI":"10.1128\/JVI.02285-10","article-title":"Detection and genetic characterization of enteroviruses circulating among wild populations of chimpanzees in Cameroon: Relationship with human and simian enteroviruses","volume":"85","author":"Harvala","year":"2011","journal-title":"J. Virol."},{"key":"ref_155","doi-asserted-by":"crossref","first-page":"5342","DOI":"10.1038\/ncomms6342","article-title":"Evidence for henipavirus spillover into human populations in Africa","volume":"5","author":"Pernet","year":"2014","journal-title":"Nat. Commun."},{"key":"ref_156","doi-asserted-by":"crossref","first-page":"676","DOI":"10.3855\/jidc.10310","article-title":"High seroprevalence of hepatitis E among pigs suggests an animal reservoir in Cameroon","volume":"12","author":"Modiyinji","year":"2018","journal-title":"J. Infect. Dev. Ctries."},{"key":"ref_157","doi-asserted-by":"crossref","first-page":"1389","DOI":"10.1086\/587493","article-title":"Coinfection with HIV-1 and simian foamy virus in West Central Africans","volume":"197","author":"Switzer","year":"2008","journal-title":"J. Infect. Dis."},{"key":"ref_158","doi-asserted-by":"crossref","first-page":"1579","DOI":"10.3201\/eid1310.070338","article-title":"Exposure to wild primates among HIV-infected persons","volume":"13","author":"LeBreton","year":"2007","journal-title":"Emerg. Infect. Dis."},{"key":"ref_159","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1016\/j.virol.2010.03.010","article-title":"Emergence of a novel and highly divergent HTLV-3 in a primate hunter in Cameroon","volume":"401","author":"Zheng","year":"2010","journal-title":"Virology"},{"key":"ref_160","doi-asserted-by":"crossref","first-page":"7994","DOI":"10.1073\/pnas.0501734102","article-title":"Emergence of unique primate T-lymphotropic viruses among central African bushmeat hunters","volume":"102","author":"Wolfe","year":"2005","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_161","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1016\/j.virol.2010.10.025","article-title":"Multiple retroviral infection by HTLV type 1, 2, 3 and simian foamy virus in a family of Pygmies from Cameroon","volume":"410","author":"Calattini","year":"2011","journal-title":"Virology"},{"key":"ref_162","doi-asserted-by":"crossref","first-page":"1314","DOI":"10.3201\/eid1309.061162","article-title":"Simian foamy virus transmission from apes to humans, rural Cameroon","volume":"13","author":"Calattini","year":"2007","journal-title":"Emerg. Infect. Dis."},{"key":"ref_163","doi-asserted-by":"crossref","unstructured":"Betsem, E., Rua, R., Tortevoye, P., Froment, A., and Gessain, A. (2011). Frequent and recent human acquisition of simian foamy viruses through apes\u2019 bites in central Africa. PLoS Pathog., 7.","DOI":"10.1371\/journal.ppat.1002306"},{"key":"ref_164","doi-asserted-by":"crossref","first-page":"932","DOI":"10.1016\/S0140-6736(04)15787-5","article-title":"Naturally acquired simian retrovirus infections in central African hunters","volume":"363","author":"Wolfe","year":"2004","journal-title":"Lancet"},{"key":"ref_165","doi-asserted-by":"crossref","first-page":"4700","DOI":"10.1128\/JVI.78.9.4700-4709.2004","article-title":"Simian T-cell leukemia virus (STLV) infection in wild primate populations in Cameroon: Evidence for dual STLV type 1 and type 3 infection in agile mangabeys (Cercocebus agilis)","volume":"78","author":"Courgnaud","year":"2004","journal-title":"J. Virol."},{"key":"ref_166","doi-asserted-by":"crossref","first-page":"2060","DOI":"10.3201\/eid1912.130891","article-title":"Porcine hokovirus in domestic pigs, Cameroon","volume":"19","author":"Adlhoch","year":"2013","journal-title":"Emerg. Infect. Dis."},{"key":"ref_167","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1080\/22221751.2018.1564631","article-title":"Evidence of exposure and human seroconversion during an outbreak of avian influenza A(H5N1) among poultry in Cameroon","volume":"8","author":"Monamele","year":"2019","journal-title":"Emerg. Microbes. Infect."},{"key":"ref_168","doi-asserted-by":"crossref","first-page":"1602","DOI":"10.3201\/eid2508.190112","article-title":"Intrafamily Transmission of Monkeypox Virus, Central African Republic, 2018","volume":"25","author":"Besombes","year":"2019","journal-title":"Emerg. Infect. Dis."},{"key":"ref_169","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1089\/vbz.2014.1585","article-title":"Seroprevalence of Rift Valley fever, Q fever, and brucellosis in ruminants on the southeastern shore of Lake Chad","volume":"14","author":"Abakar","year":"2014","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_170","doi-asserted-by":"crossref","first-page":"1371","DOI":"10.3201\/eid2407.172123","article-title":"Highly Pathogenic Avian Influenza A(H5N8) Virus, Democratic Republic of the Congo, 2017","volume":"24","author":"Twabela","year":"2018","journal-title":"Emerg. Infect. Dis."},{"key":"ref_171","doi-asserted-by":"crossref","first-page":"434","DOI":"10.3201\/eid0703.017311","article-title":"Outbreak of human monkeypox, Democratic Republic of Congo, 1996 to 1997","volume":"7","author":"Hutin","year":"2001","journal-title":"Emerg. Infect. Dis."},{"key":"ref_172","doi-asserted-by":"crossref","first-page":"428","DOI":"10.4269\/ajtmh.2005.73.428","article-title":"Extended interhuman transmission of monkeypox in a hospital community in the Republic of the Congo, 2003","volume":"73","author":"Learned","year":"2005","journal-title":"Am. J. Trop Med. Hyg."},{"key":"ref_173","doi-asserted-by":"crossref","first-page":"2919","DOI":"10.1128\/JCM.40.8.2919-2921.2002","article-title":"Outbreaks of disease suspected of being due to human monkeypox virus infection in the Democratic Republic of Congo in 2001","volume":"40","author":"Meyer","year":"2002","journal-title":"J. Clin. Microbiol."},{"key":"ref_174","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/j.virol.2012.09.035","article-title":"HTLV-3\/4 and simian foamy retroviruses in humans: Discovery, epidemiology, cross-species transmission and molecular virology","volume":"435","author":"Gessain","year":"2013","journal-title":"Virology"},{"key":"ref_175","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1006\/viro.1999.9634","article-title":"Sites of simian foamy virus persistence in naturally infected African green monkeys: Latent provirus is ubiquitous, whereas viral replication is restricted to the oral mucosa","volume":"257","author":"Falcone","year":"1999","journal-title":"Virology"},{"key":"ref_176","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1111\/j.1600-0684.2006.00171.x","article-title":"Foamy virus infection in primates","volume":"35","author":"Murray","year":"2006","journal-title":"J. Med. Primatol."},{"key":"ref_177","doi-asserted-by":"crossref","first-page":"5981","DOI":"10.1128\/JVI.00367-08","article-title":"Replication in a superficial epithelial cell niche explains the lack of pathogenicity of primate foamy virus infections","volume":"82","author":"Murray","year":"2008","journal-title":"J. Virol"},{"key":"ref_178","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1186\/1742-4690-9-100","article-title":"Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo","volume":"9","author":"Switzer","year":"2012","journal-title":"Retrovirology"},{"key":"ref_179","doi-asserted-by":"crossref","unstructured":"Halawi, A.D., Saasa, N., Pongombo, B.L., Kajihara, M., Chambaro, H.M., Hity, M., Sawa, H., Takada, A., Mweene, A.S., and Nsembo, L.L. (2019). Seroprevalence of Rift Valley fever in cattle of smallholder farmers in Kwilu Province in the Democratic Republic of Congo. Trop Anim. Health Prod.","DOI":"10.1007\/s11250-019-01978-z"},{"key":"ref_180","doi-asserted-by":"crossref","unstructured":"Xie, D.D., Li, J., Chen, J.T., Eyi, U.M., Matesa, R.A., Obono, M.M., Ehapo, C.S., Yang, L.Y., Yang, H., and Yang, H.T. (2015). Seroprevalence of Human Immunodeficiency Virus, Hepatitis B Virus, Hepatitis C Virus, and Treponema pallidum Infections among Blood Donors on Bioko Island, Equatorial Guinea. PLoS ONE, 10.","DOI":"10.1371\/journal.pone.0139947"},{"key":"ref_181","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1089\/vbz.2011.0736","article-title":"A chikungunya outbreak associated with the vector Aedes albopictus in remote villages of Gabon","volume":"12","author":"Paupy","year":"2012","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_182","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1093\/oxfordjournals.bmb.a011720","article-title":"Re-emergence of monkeypox in Africa: A review of the past six years","volume":"54","author":"Heymann","year":"1998","journal-title":"Br. Med. Bull."},{"key":"ref_183","first-page":"53","article-title":"First appearance of monkey pox in human beings in Gabon","volume":"51","author":"Meyer","year":"1991","journal-title":"Med. Trop (Mars)"},{"key":"ref_184","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1128\/JVI.06016-11","article-title":"Cross-species transmission of simian foamy virus to humans in rural Gabon, Central Africa","volume":"86","author":"Caron","year":"2012","journal-title":"J. Virol."},{"key":"ref_185","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1186\/1742-4690-7-105","article-title":"Two distinct variants of simian foamy virus in naturally infected mandrills (Mandrillus sphinx) and cross-species transmission to humans","volume":"7","author":"Betsem","year":"2010","journal-title":"Retrovirology"},{"key":"ref_186","doi-asserted-by":"crossref","first-page":"1536","DOI":"10.3390\/v5061536","article-title":"Simian foamy virus in non-human primates and cross-species transmission to humans in Gabon: An emerging zoonotic disease in central Africa?","volume":"5","author":"Kazanji","year":"2013","journal-title":"Viruses"},{"key":"ref_187","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1186\/1742-4690-9-28","article-title":"New STLV-3 strains and a divergent SIVmus strain identified in non-human primate bushmeat in Gabon","volume":"9","author":"Liegeois","year":"2012","journal-title":"Retrovirology"},{"key":"ref_188","doi-asserted-by":"crossref","unstructured":"Nurtop, E., Moyen, N., Dzia-Lepfoundzou, A., Dimi, Y., Ninove, L., Drexler, J.F., Gallian, P., de Lamballerie, X., and Priet, S. (2019). A Report of Zika Virus Seroprevalence in Republic of the Congo. Vector Borne Zoonotic Dis.","DOI":"10.1089\/vbz.2019.2466"},{"key":"ref_189","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.4102\/jsava.v88i0.1379","article-title":"Seroprevalence of Rift Valley fever in cattle along the Akagera-Nyabarongo rivers, Rwanda","volume":"88","author":"Umuhoza","year":"2017","journal-title":"J. S. Afr. Vet. Assoc."},{"key":"ref_190","doi-asserted-by":"crossref","unstructured":"Wane, J., Nyatanyi, T., Nkunda, R., Rukelibuga, J., Ahmed, Z., Biedron, C., Kabeja, A., Muhimpundu, M.A., Kabanda, A., and Antara, S. (2012). 2009 pandemic influenza A (H1N1) virus outbreak and response\u2013Rwanda, October, 2009\u2013May, 2010. PLoS ONE, 7.","DOI":"10.1371\/journal.pone.0031572"},{"key":"ref_191","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.actatropica.2015.12.012","article-title":"Seroprevalence of antibodies against dengue virus among pregnant women in the Democratic Republic of Sao Tome and Principe","volume":"155","author":"Yen","year":"2016","journal-title":"Acta Trop"},{"key":"ref_192","doi-asserted-by":"crossref","first-page":"1539","DOI":"10.3201\/eid1610.100713","article-title":"Human monkeypox outbreak caused by novel virus belonging to Congo Basin clade, Sudan, 2005","volume":"16","author":"Formenty","year":"2010","journal-title":"Emerg. Infect. Dis."},{"key":"ref_193","doi-asserted-by":"crossref","unstructured":"Jeevan, T., Darnell, D., Gradi, E.A., Benali, Y., Kara, R., Guetarni, D., Rubrum, A., Seiler, P.J., Crumpton, J.C., and Webby, R.J. (2019). A(H9N2) influenza viruses associated with chicken mortality in outbreaks in Algeria 2017. Influenza Other Respir Viruses.","DOI":"10.1111\/irv.12675"},{"key":"ref_194","doi-asserted-by":"crossref","first-page":"354","DOI":"10.3201\/eid2202.151528","article-title":"AP92-like Crimean-Congo Hemorrhagic Fever Virus in Hyalomma aegyptium Ticks, Algeria","volume":"22","author":"Kautman","year":"2016","journal-title":"Emerg. Infect. Dis."},{"key":"ref_195","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1111\/tbed.12209","article-title":"Epidemiology and Genetic Characterization of H3N8 Equine Influenza Virus Responsible for Clinical Disease in Algeria in 2011","volume":"62","author":"Laabassi","year":"2015","journal-title":"Transbound Emerg. Dis."},{"key":"ref_196","doi-asserted-by":"crossref","first-page":"1101","DOI":"10.3201\/eid1607.091695","article-title":"Zoonotic transmission of avian influenza virus (H5N1), Egypt, 2006\u20132009","volume":"16","author":"Kandeel","year":"2010","journal-title":"Emerg. Infect. Dis."},{"key":"ref_197","doi-asserted-by":"crossref","first-page":"1120","DOI":"10.3201\/eid1307.061222","article-title":"Possible avian influenza (H5N1) from migratory bird, Egypt","volume":"13","author":"Saad","year":"2007","journal-title":"Emerg. Infect. Dis."},{"key":"ref_198","doi-asserted-by":"crossref","first-page":"43","DOI":"10.3201\/eid1901.121080","article-title":"Microevolution of highly pathogenic avian influenza A(H5N1) viruses isolated from humans, Egypt, 2007\u20132011","volume":"19","author":"Younan","year":"2013","journal-title":"Emerg. Infect. Dis."},{"key":"ref_199","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1016\/j.jviromet.2009.04.008","article-title":"Characterization of an avian influenza virus H5N1 Egyptian isolate","volume":"159","author":"Bahgat","year":"2009","journal-title":"J. Virol Methods"},{"key":"ref_200","doi-asserted-by":"crossref","unstructured":"Mostafa, A., Abdelwhab, E.M., Mettenleiter, T.C., and Pleschka, S. (2018). Zoonotic Potential of Influenza A Viruses: A Comprehensive Overview. Viruses, 10.","DOI":"10.3390\/v10090497"},{"key":"ref_201","doi-asserted-by":"crossref","first-page":"38388","DOI":"10.1038\/srep38388","article-title":"Risk assessment of recent Egyptian H5N1 influenza viruses","volume":"6","author":"Arafa","year":"2016","journal-title":"Sci. Rep."},{"key":"ref_202","doi-asserted-by":"crossref","unstructured":"Helmy, Y.A., El-Adawy, H., and Abdelwhab, E.M. (2017). A Comprehensive Review of Common Bacterial, Parasitic and Viral Zoonoses at the Human-Animal Interface in Egypt. Pathogens, 6.","DOI":"10.3390\/pathogens6030033"},{"key":"ref_203","first-page":"441","article-title":"An epidemic of Rift Valley fever in Egypt. 2. Isolation of the virus from animals","volume":"57","author":"Imam","year":"1979","journal-title":"Bull. World Health Organ."},{"key":"ref_204","doi-asserted-by":"crossref","unstructured":"Samy, A.M., Peterson, A.T., and Hall, M. (2017). Phylogeography of Rift Valley Fever Virus in Africa and the Arabian Peninsula. PLoS Negl. Trop Dis., 11.","DOI":"10.1371\/journal.pntd.0005226"},{"key":"ref_205","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1136\/vr.105.6.124","article-title":"An epizootic of Rift Valley fever in Egypt in 1977","volume":"105","author":"Meegan","year":"1979","journal-title":"Vet. Rec."},{"key":"ref_206","doi-asserted-by":"crossref","first-page":"274","DOI":"10.1099\/jgv.0.000342","article-title":"Evidence for zoonotic origins of Middle East respiratory syndrome coronavirus","volume":"97","author":"Han","year":"2016","journal-title":"J. Gen. Virol."},{"key":"ref_207","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.1038\/emi.2016.130","article-title":"Systematic, active surveillance for Middle East respiratory syndrome coronavirus in camels in Egypt","volume":"6","author":"Ali","year":"2017","journal-title":"Emerg. Microbes Infect."},{"key":"ref_208","doi-asserted-by":"crossref","first-page":"20574","DOI":"10.2807\/1560-7917.ES2013.18.36.20574","article-title":"Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt, June 2013","volume":"18","author":"Perera","year":"2013","journal-title":"Euro Surveill"},{"key":"ref_209","first-page":"77","article-title":"Results of a preliminary seroepidemiological survey for Crimean-Congo hemorrhagic fever virus in Egypt","volume":"22","author":"Darwish","year":"1978","journal-title":"Acta Virol."},{"key":"ref_210","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1089\/vbz.2013.1525","article-title":"Serosurvey for zoonotic viral and bacterial pathogens among slaughtered livestock in Egypt","volume":"14","author":"Horton","year":"2014","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_211","doi-asserted-by":"crossref","first-page":"2799","DOI":"10.1099\/jgv.0.000610","article-title":"Biosafety standards for working with Crimean-Congo hemorrhagic fever virus","volume":"97","author":"Weidmann","year":"2016","journal-title":"J. Gen. Virol."},{"key":"ref_212","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1016\/j.jiph.2009.11.002","article-title":"Studies on West Nile virus infection in Egypt","volume":"3","author":"Soliman","year":"2010","journal-title":"J Infect Public Health"},{"key":"ref_213","doi-asserted-by":"crossref","first-page":"532","DOI":"10.1186\/1743-422X-8-532","article-title":"Observations on Rift Valley fever virus and vaccines in Egypt","volume":"8","author":"Kamal","year":"2011","journal-title":"Virol. J."},{"key":"ref_214","doi-asserted-by":"crossref","first-page":"1149","DOI":"10.1016\/0140-6736(93)92128-G","article-title":"Recurrence of Rift Valley fever in Egypt","volume":"342","author":"Arthur","year":"1993","journal-title":"Lancet"},{"key":"ref_215","first-page":"437","article-title":"An epidemic of Rift Valley fever in Egypt. 1. Diagnosis of Rift Valley fever in man","volume":"57","author":"Imam","year":"1979","journal-title":"Bull. World Health Organ."},{"key":"ref_216","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1186\/1743-422X-9-173","article-title":"Isolation and mutation trend analysis of influenza A virus subtype H9N2 in Egypt","volume":"9","author":"Afifi","year":"2012","journal-title":"Virol. J."},{"key":"ref_217","doi-asserted-by":"crossref","first-page":"400","DOI":"10.1080\/03079457.2018.1470606","article-title":"Characterization of highly pathogenic avian influenza H5N8 virus from Egyptian domestic waterfowl in 2017","volume":"47","author":"Anis","year":"2018","journal-title":"Avian Pathol."},{"key":"ref_218","doi-asserted-by":"crossref","first-page":"867","DOI":"10.1007\/s11262-016-1369-z","article-title":"Genetic characterization of highly pathogenic avian influenza H5N1 viruses isolated from naturally infected pigeons in Egypt","volume":"52","author":"Elgendy","year":"2016","journal-title":"Virus Genes"},{"key":"ref_219","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1007\/s00705-012-1269-z","article-title":"Isolation of H9N2 avian influenza virus from bobwhite quail (Colinus virginianus) in Egypt","volume":"157","author":"Arafa","year":"2012","journal-title":"Arch. Virol."},{"key":"ref_220","doi-asserted-by":"crossref","unstructured":"Gomaa, M.R., Kandeil, A., Kayed, A.S., Elabd, M.A., Zaki, S.A., Abu Zeid, D., El Rifay, A.S., Mousa, A.A., Farag, M.M., and McKenzie, P.P. (2016). Serological Evidence of Human Infection with Avian Influenza A H7virus in Egyptian Poultry Growers. PLoS ONE, 11.","DOI":"10.1371\/journal.pone.0155294"},{"key":"ref_221","doi-asserted-by":"crossref","first-page":"1048","DOI":"10.3201\/eid2306.162056","article-title":"Highly Pathogenic Avian Influenza Virus (H5N8) Clade 2.3.4.4 Infection in Migratory Birds, Egypt","volume":"23","author":"Selim","year":"2017","journal-title":"Emerg. Infect. Dis."},{"key":"ref_222","doi-asserted-by":"crossref","first-page":"422","DOI":"10.1637\/11068-032215-ResNote.1","article-title":"Characterization of Avian Influenza and Newcastle Disease Viruses from Poultry in Libya","volume":"59","author":"Kammon","year":"2015","journal-title":"Avian Dis."},{"key":"ref_223","first-page":"6479","article-title":"Pandemic influenza A(H1N1)2009 in Morocco: Experience of the Mohammed V Military Teaching Hospital, Rabat, 12 June to 24 December 2009","volume":"16","author":"Bajjou","year":"2011","journal-title":"Euro. Surveill"},{"key":"ref_224","doi-asserted-by":"crossref","unstructured":"Boukharta, M., Azlmat, S., Elharrak, M., and Ennaji, M.M. (2015). Multiple alignment comparison of the non-structural genes of three strains of equine influenza viruses (H3N8) isolated in Morocco. BMC Res. Notes, 8.","DOI":"10.1186\/s13104-015-1441-0"},{"key":"ref_225","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1186\/s12985-016-0596-1","article-title":"First outbreaks and phylogenetic analyses of avian influenza H9N2 viruses isolated from poultry flocks in Morocco","volume":"13","author":"Fellahi","year":"2016","journal-title":"Virol. J."},{"key":"ref_226","doi-asserted-by":"crossref","first-page":"1247","DOI":"10.1016\/j.trstmh.2008.04.014","article-title":"An outbreak of yellow fever with concurrent chikungunya virus transmission in South Kordofan, Sudan, 2005","volume":"102","author":"Gould","year":"2008","journal-title":"Trans. R. Soc. Trop Med. Hyg."},{"key":"ref_227","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jiph.2010.08.001","article-title":"Dengue hemorrhagic fever outbreak in children in Port Sudan","volume":"4","author":"Malik","year":"2011","journal-title":"J. Infect. Public Health"},{"key":"ref_228","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1016\/j.jiph.2015.04.023","article-title":"Sero-prevalence of dengue infections in the Kassala state in the eastern part of the Sudan in 2011","volume":"8","author":"Himatt","year":"2015","journal-title":"J. Infect. Public Health"},{"key":"ref_229","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1016\/j.jiph.2013.04.007","article-title":"Yellow Fever outbreak in Darfur, Sudan in October 2012; the initial outbreak investigation report","volume":"6","author":"Soghaier","year":"2013","journal-title":"J. Infect. Public Health"},{"key":"ref_230","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1016\/j.medmal.2013.06.005","article-title":"Genetic diversity of influenza B virus in 2009\u20132010 and 2010\u20132011 in Tunisia","volume":"43","author":"Ledesma","year":"2013","journal-title":"Med. Mal. Infect."},{"key":"ref_231","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1051\/parasite\/2016010","article-title":"Sero-epidemiological survey of Crimean-Congo hemorrhagic fever virus in Tunisia","volume":"23","author":"Wasfi","year":"2016","journal-title":"Parasite"},{"key":"ref_232","doi-asserted-by":"crossref","first-page":"63","DOI":"10.3389\/fvets.2015.00063","article-title":"Serological Evidence of Rift Valley Fever Virus Circulation in Domestic Cattle and African Buffalo in Northern Botswana (2010\u20132011)","volume":"2","author":"Jori","year":"2015","journal-title":"Front Vet. Sci."},{"key":"ref_233","doi-asserted-by":"crossref","unstructured":"Coetzer, A., Coertse, J., Makalo, M.J., Molomo, M., Markotter, W., and Nel, L.H. (2017). Epidemiology of Rabies in Lesotho: The Importance of Routine Surveillance and Virus Characterization. Trop Med. Infect Dis., 2.","DOI":"10.3390\/tropicalmed2030030"},{"key":"ref_234","doi-asserted-by":"crossref","first-page":"371","DOI":"10.7589\/0090-3558-48.2.371","article-title":"Black-backed jackal exposure to rabies virus, canine distemper virus, and Bacillus anthracis in Etosha National Park, Namibia","volume":"48","author":"Bellan","year":"2012","journal-title":"J. Wildl. Dis."},{"key":"ref_235","first-page":"214","article-title":"Avian Influenza H5N8 Outbreak in African Penguins (Spheniscus demersus), Namibia, 2019","volume":"56","author":"Umberto","year":"2019","journal-title":"J. Wildl. Dis."},{"key":"ref_236","doi-asserted-by":"crossref","first-page":"2025","DOI":"10.3201\/eid1912.130593","article-title":"Rift Valley fever in Namibia, 2010","volume":"19","author":"Monaco","year":"2013","journal-title":"Emerg. Infect. Dis."},{"key":"ref_237","doi-asserted-by":"crossref","first-page":"232","DOI":"10.1128\/CVI.00345-09","article-title":"Seroprevalences to viral pathogens in free-ranging and captive cheetahs (Acinonyx jubatus) on Namibian Farmland","volume":"17","author":"Thalwitzer","year":"2010","journal-title":"Clin. Vaccine Immunol."},{"key":"ref_238","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1017\/S0022172400040596","article-title":"The isolation and classification of Tern virus: Influenza A-Tern South Africa\u20131961","volume":"64","author":"Becker","year":"1966","journal-title":"J. Hyg. (Lond.)"},{"key":"ref_239","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1016\/j.prevetmed.2008.03.011","article-title":"Risk factors for seropositivity to H5 avian influenza virus in ostrich farms in the Western Cape Province, South Africa","volume":"86","author":"Thompson","year":"2008","journal-title":"Prev. Vet. Med."},{"key":"ref_240","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1016\/j.prevetmed.2016.03.019","article-title":"Description of an outbreak of highly pathogenic avian influenza in domestic ostriches (Struthio camelus) in South Africa in 2011","volume":"128","author":"Sinclair","year":"2016","journal-title":"Prev. Vet. Med."},{"key":"ref_241","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1637\/11869-042518-Reg.1","article-title":"The Incursion and Spread of Highly Pathogenic Avian Influenza H5N8 Clade 2.3.4.4 within South Africa","volume":"63","author":"Abolnik","year":"2019","journal-title":"Avian Dis."},{"key":"ref_242","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1080\/03079457.2013.779637","article-title":"Serological investigation of highly pathogenic avian influenza H5N2 in ostriches (Struthio camelus)","volume":"42","author":"Abolnik","year":"2013","journal-title":"Avian Pathol."},{"key":"ref_243","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1637\/11110-042815-Reg","article-title":"Susceptibility and Status of Avian Influenza in Ostriches","volume":"60","author":"Abolnik","year":"2016","journal-title":"Avian Dis."},{"key":"ref_244","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1637\/7551-033106R.1","article-title":"Phylogenetic analysis of low-pathogenicity avian influenza H6N2 viruses from chicken outbreaks (2001\u20132005) suggest that they are reassortants of historic ostrich low-pathogenicity avian influenza H9N2 and H6N8 viruses","volume":"51","author":"Abolnik","year":"2007","journal-title":"Avian Dis."},{"key":"ref_245","doi-asserted-by":"crossref","unstructured":"Poen, M.J., Fouchier, R.A., Webby, R.J., Webster, R.G., and El Zowalaty, M.E. (2019). Evidence of the Presence of Low Pathogenic Avian Influenza A Viruses in Wild Waterfowl in 2018 in South Africa. Pathogens, 8.","DOI":"10.3390\/pathogens8040163"},{"key":"ref_246","doi-asserted-by":"crossref","unstructured":"Abolnik, C., and Strydom, C. (2019). Complete Genome Sequence of a Class I Avian Orthoavulavirus 1 Isolated from Commercial Ostriches. Microbiol. Resour. Announc., 8.","DOI":"10.1128\/MRA.00543-19"},{"key":"ref_247","doi-asserted-by":"crossref","first-page":"S148","DOI":"10.1093\/infdis\/jis583","article-title":"Introduction of 2009 pandemic influenza A virus subtype H1N1 into South Africa: Clinical presentation, epidemiology, and transmissibility of the first 100 cases","volume":"206","author":"Archer","year":"2012","journal-title":"J. Infect. Dis."},{"key":"ref_248","doi-asserted-by":"crossref","first-page":"1162","DOI":"10.3201\/eid2007.131869","article-title":"Epidemiology of influenza virus types and subtypes in South Africa, 2009\u20132012","volume":"20","author":"Cohen","year":"2014","journal-title":"Emerg. Infect. Dis."},{"key":"ref_249","doi-asserted-by":"crossref","first-page":"298","DOI":"10.3201\/eid1802.111309","article-title":"Survey of infections transmissible between baboons and humans, Cape Town, South Africa","volume":"18","author":"Drewe","year":"2012","journal-title":"Emerg. Infect. Dis."},{"key":"ref_250","doi-asserted-by":"crossref","first-page":"598","DOI":"10.3201\/eid1904.121107","article-title":"Occult hepatitis B virus infection in chacma baboons, South Africa","volume":"19","author":"Dickens","year":"2013","journal-title":"Emerg. Infect. Dis."},{"key":"ref_251","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1089\/vbz.2013.1407","article-title":"Use of envelope domain III protein for detection and differentiation of flaviviruses in the Free State Province, South Africa","volume":"14","author":"Mathengtheng","year":"2014","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_252","doi-asserted-by":"crossref","first-page":"311","DOI":"10.3201\/eid0903.020628","article-title":"Experimental infection of North American birds with the New York 1999 strain of West Nile virus","volume":"9","author":"Komar","year":"2003","journal-title":"Emerg Infect. Dis."},{"key":"ref_253","doi-asserted-by":"crossref","first-page":"S98","DOI":"10.1038\/nm1144","article-title":"Emerging flaviviruses: The spread and resurgence of Japanese encephalitis, West Nile and dengue viruses","volume":"10","author":"Mackenzie","year":"2004","journal-title":"Nat. Med."},{"key":"ref_254","first-page":"271","article-title":"West Nile virus in livestock and wildlife","volume":"267","author":"McLean","year":"2002","journal-title":"Curr. Top. Microbiol. Immunol."},{"key":"ref_255","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1089\/vbz.2009.0230","article-title":"West Nile virus lineage 2 as a cause of zoonotic neurological disease in humans and horses in southern Africa","volume":"10","author":"Venter","year":"2010","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_256","doi-asserted-by":"crossref","first-page":"2060","DOI":"10.3201\/eid2312.162078","article-title":"West Nile Virus Lineage 2 in Horses and Other Animals with Neurologic Disease, South Africa, 2008\u20132015","volume":"23","author":"Venter","year":"2017","journal-title":"Emerg. Infect. Dis."},{"key":"ref_257","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1007\/s11481-010-9234-7","article-title":"Arboviral encephalitides: Transmission, emergence, and pathogenesis","volume":"5","author":"Hollidge","year":"2010","journal-title":"J. Neuroimmune Pharmacol."},{"key":"ref_258","doi-asserted-by":"crossref","first-page":"318","DOI":"10.3201\/eid1802.111403","article-title":"Shuni virus as cause of neurologic disease in horses","volume":"18","author":"Williams","year":"2012","journal-title":"Emerg Infect. Dis."},{"key":"ref_259","first-page":"547","article-title":"Sindbis virus infection in man. Report of a case with recovery of virus from skin lesions","volume":"37","author":"Malherbe","year":"1963","journal-title":"S. Afr. Med. J."},{"key":"ref_260","doi-asserted-by":"crossref","first-page":"234","DOI":"10.1017\/S0950268813000964","article-title":"Human cases of Sindbis fever in South Africa, 2006\u20132010","volume":"142","author":"Storm","year":"2014","journal-title":"Epidemiol. Infect."},{"key":"ref_261","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1089\/vbz.2012.1181","article-title":"Human cases of Wesselsbron disease, South Africa 2010\u20132011","volume":"13","author":"Weyer","year":"2013","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_262","first-page":"183","article-title":"Wesselsbron virus\u2014A virus not previously described associated with abortion in domestic animals","volume":"27","author":"Weiss","year":"1956","journal-title":"Onderstepoort J. Vet. Res."},{"key":"ref_263","doi-asserted-by":"crossref","first-page":"2225","DOI":"10.3201\/eid2112.150132","article-title":"Sindbis and Middelburg Old World Alphaviruses Associated with Neurologic Disease in Horses, South Africa","volume":"21","author":"Human","year":"2015","journal-title":"Emerg. Infect. Dis."},{"key":"ref_264","unstructured":"Calisher, C.H., and Karabatsos, N. (1988). Arbovirus Serogroups: Definition and Geographic Distribution, CRC Press."},{"key":"ref_265","doi-asserted-by":"crossref","first-page":"1360","DOI":"10.3201\/eid2407.172096","article-title":"Seroepidemiologic Survey of Crimean-Congo Hemorrhagic Fever Virus in Selected Risk Groups, South Africa","volume":"24","author":"Vawda","year":"2018","journal-title":"Emerg. Infect. Dis."},{"key":"ref_266","doi-asserted-by":"crossref","first-page":"1598","DOI":"10.3201\/eid1510.090211","article-title":"Nosocomial outbreak of novel arenavirus infection, southern Africa","volume":"15","author":"Paweska","year":"2009","journal-title":"Emerg. Infect. Dis."},{"key":"ref_267","doi-asserted-by":"crossref","unstructured":"Briese, T., Paweska, J.T., McMullan, L.K., Hutchison, S.K., Street, C., Palacios, G., Khristova, M.L., Weyer, J., Swanepoel, R., and Egholm, M. (2009). Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa. PLoS Pathog., 5.","DOI":"10.1371\/journal.ppat.1000455"},{"key":"ref_268","doi-asserted-by":"crossref","first-page":"1134","DOI":"10.3201\/eid2406.172165","article-title":"Marburg Virus Infection in Egyptian Rousette Bats, South Africa, 2013\u20132014(1)","volume":"24","author":"Paweska","year":"2018","journal-title":"Emerg. Infect. Dis."},{"key":"ref_269","doi-asserted-by":"crossref","first-page":"516","DOI":"10.1089\/vbz.2012.1101","article-title":"Coronaviruses in South African bats","volume":"13","author":"Geldenhuys","year":"2013","journal-title":"Vector Borne Zoonotic Dis."},{"key":"ref_270","doi-asserted-by":"crossref","first-page":"169","DOI":"10.4102\/jsava.v69i4.847","article-title":"Mokola virus infection: Description of recent South African cases and a review of the virus epidemiology","volume":"69","author":"Bosch","year":"1998","journal-title":"J. S. Afr. Vet. Assoc."},{"key":"ref_271","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1128\/jvi.6.5.690-692.1970","article-title":"Two African viruses serologically and morphologically related to rabies virus","volume":"6","author":"Shope","year":"1970","journal-title":"J. Virol."},{"key":"ref_272","doi-asserted-by":"crossref","first-page":"356","DOI":"10.4269\/ajtmh.1972.21.356","article-title":"Mokola virus. Further studies on IbAn 27377, a new rabies-related etiologic agent of zoonosis in nigeria","volume":"21","author":"Kemp","year":"1972","journal-title":"Am. J. Trop Med. Hyg."},{"key":"ref_273","doi-asserted-by":"crossref","first-page":"921","DOI":"10.1089\/vbz.2009.0109","article-title":"Re-emergence of dog rabies in Mpumalanga province, South Africa. Vector","volume":"10","author":"Mkhize","year":"2010","journal-title":"Borne Zoonotic Dis."},{"key":"ref_274","unstructured":"Blumberg, L., Weyer, J., Pienaar, H., and Markotter, W. (2010). Rabies-Guide for the Medical, Veterinary and Allied Professions."},{"key":"ref_275","doi-asserted-by":"crossref","first-page":"10864","DOI":"10.1038\/s41598-018-29045-x","article-title":"Spatiotemporal epidemiology of rabies at an interface between domestic dogs and wildlife in South Africa","volume":"8","author":"Grover","year":"2018","journal-title":"Sci. Rep."},{"key":"ref_276","doi-asserted-by":"crossref","first-page":"72","DOI":"10.4102\/jsava.v74i3.514","article-title":"A survey of zoonotic diseases contracted by South African veterinarians","volume":"74","author":"Gummow","year":"2003","journal-title":"J. S Afr Vet. Assoc"},{"key":"ref_277","first-page":"797","article-title":"Rift Valley fever; I. The occurrence of human cases in Johannesburg","volume":"25","author":"Mundel","year":"1951","journal-title":"S. Afr. Med. J."},{"key":"ref_278","first-page":"514","article-title":"Rift Valley fever in South Africa; a study of the 1953 outbreak in the Orange Free State, with special reference to the vectors and possible reservoir hosts","volume":"29","author":"Gear","year":"1955","journal-title":"S. Afr. Med. J."},{"key":"ref_279","doi-asserted-by":"crossref","unstructured":"Jansen van Vuren, P., Kgaladi, J., Patharoo, V., Ohaebosim, P., Msimang, V., Nyokong, B., and Paweska, J.T. (2018). Human Cases of Rift Valley Fever in South Africa, 2018. Vector Borne Zoonotic Dis.","DOI":"10.1089\/vbz.2018.2357"},{"key":"ref_280","doi-asserted-by":"crossref","unstructured":"Archer, B.N., Thomas, J., Weyer, J., Cengimbo, A., Landoh, D.E., Jacobs, C., Ntuli, S., Modise, M., Mathonsi, M., and Mashishi, M.S. (2013). Epidemiologic Investigations into Outbreaks of Rift Valley Fever in Humans, South Africa, 2008\u20132011. Emerg. Infect. Dis., 19.","DOI":"10.3201\/eid1912.121527"},{"key":"ref_281","doi-asserted-by":"crossref","first-page":"795","DOI":"10.4102\/ojvr.v82i1.795","article-title":"Spatio-temporal patterns and movement analysis of pigs from smallholder farms and implications for African swine fever spread, Limpopo province, South Africa","volume":"82","author":"Fasina","year":"2015","journal-title":"Onderstepoort J. Vet. Res."},{"key":"ref_282","doi-asserted-by":"crossref","unstructured":"van den Bergh, C., Venter, E.H., Swanepoel, R., and Thompson, P.N. (2019). High seroconversion rate to Rift Valley fever virus in cattle and goats in far northern KwaZulu-Natal, South Africa, in the absence of reported outbreaks. PLoS Negl. Trop Dis., 13.","DOI":"10.1371\/journal.pntd.0007296"},{"key":"ref_283","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1136\/vr.155.5.149","article-title":"Genetic similarity between porcine circovirus type 2 isolated from the first reported case of PMWS in South Africa and North American isolates","volume":"155","author":"Drew","year":"2004","journal-title":"Vet. Rec."},{"key":"ref_284","doi-asserted-by":"crossref","unstructured":"Afolabi, K.O., Iweriebor, B.C., Obi, L.C., and Okoh, A.I. (2017). Molecular detection of Porcine circovirus type 2 in swine herds of Eastern Cape Province South Africa. BMC Microbiol., 17.","DOI":"10.1186\/s12866-017-1121-4"},{"key":"ref_285","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.actatropica.2018.10.010","article-title":"Prevalence of porcine parvoviruses in some South African swine herds with background of porcine circovirus type 2 infection","volume":"190","author":"Afolabi","year":"2019","journal-title":"Acta Trop"},{"key":"ref_286","first-page":"241","article-title":"Porcine parvovirus in pig herds in Southern Africa","volume":"46","author":"Pini","year":"1975","journal-title":"J. S. Afr. Vet. Assoc."},{"key":"ref_287","doi-asserted-by":"crossref","first-page":"582","DOI":"10.7196\/SAMJ.2019.v109i8.13867","article-title":"Hepatitis E virus in patients with acute hepatitis in Cape Town, South Africa, 2011","volume":"109","author":"Korsman","year":"2019","journal-title":"S. Afr. Med. J."},{"key":"ref_288","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.meegid.2015.11.032","article-title":"Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events","volume":"38","author":"Nyaga","year":"2016","journal-title":"Infect. Genet. Evol"},{"key":"ref_289","first-page":"275","article-title":"Diarrhoea in pigs induced by rotavirus","volume":"44","author":"Prozesky","year":"1977","journal-title":"Onderstepoort J. Vet. Res."},{"key":"ref_290","doi-asserted-by":"crossref","first-page":"655","DOI":"10.2307\/1593107","article-title":"Newcastle disease and avian influenza A virus in wild waterfowl in South Africa","volume":"44","author":"Pfitzer","year":"2000","journal-title":"Avian Dis."},{"key":"ref_291","doi-asserted-by":"crossref","first-page":"E1","DOI":"10.4102\/ojvr.v79i1.499","article-title":"Orf in South Africa: Endemic but neglected","volume":"79","author":"Scagliarini","year":"2012","journal-title":"Onderstepoort J. Vet. Res."},{"key":"ref_292","doi-asserted-by":"crossref","unstructured":"Famoroti, T., Sibanda, W., and Ndung\u2019u, T. (2018). Prevalence and seasonality of common viral respiratory pathogens, including Cytomegalovirus in children, between 0\u20135 years of age in KwaZulu-Natal, an HIV endemic province in South Africa. BMC Pediatr., 18.","DOI":"10.1186\/s12887-018-1222-8"},{"key":"ref_293","doi-asserted-by":"crossref","first-page":"346","DOI":"10.1016\/j.jinf.2017.06.007","article-title":"Respiratory syncytial virus in adults with severe acute respiratory illness in a high HIV prevalence setting","volume":"75","author":"Moyes","year":"2017","journal-title":"J. Infect."},{"key":"ref_294","doi-asserted-by":"crossref","first-page":"278","DOI":"10.7196\/SAMJ.2018.v108i4.12830","article-title":"Blood and virus detection on barber clippers","volume":"108","author":"Spengane","year":"2018","journal-title":"S. Afr. Med. J."},{"key":"ref_295","first-page":"767","article-title":"An unusual case of human rabies thought to be of chiropteran origin","volume":"45","author":"Meredith","year":"1971","journal-title":"S Afr Med. J."},{"key":"ref_296","doi-asserted-by":"crossref","first-page":"e83","DOI":"10.1016\/S2352-3018(16)30190-4","article-title":"Swaziland HIV Incidence Measurement Survey (SHIMS): A prospective national cohort study","volume":"4","author":"Justman","year":"2017","journal-title":"Lancet HIV"},{"key":"ref_297","doi-asserted-by":"crossref","first-page":"572","DOI":"10.1046\/j.1365-2672.2001.01492.x","article-title":"A history of influenza","volume":"91","author":"Potter","year":"2001","journal-title":"J. Appl Microbiol"},{"key":"ref_298","doi-asserted-by":"crossref","first-page":"7692","DOI":"10.1128\/JVI.03544-13","article-title":"Roles of humidity and temperature in shaping influenza seasonality","volume":"88","author":"Lowen","year":"2014","journal-title":"J. Virol."},{"key":"ref_299","doi-asserted-by":"crossref","first-page":"4055","DOI":"10.1073\/pnas.1701410114","article-title":"Emerging infectious diseases: A proactive approach","volume":"114","author":"Bloom","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_300","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1179\/2047773214Y.0000000169","article-title":"The cost of an Ebola case","volume":"109","author":"Bartsch","year":"2015","journal-title":"Pathog Glob. Health"},{"key":"ref_301","doi-asserted-by":"crossref","unstructured":"Dimitri, N. (2015). The Economics of Epidemic Diseases. PLoS ONE, 10.","DOI":"10.1371\/journal.pone.0137964"},{"key":"ref_302","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1126\/science.285.5426.397","article-title":"Climate and satellite indicators to forecast Rift Valley fever epidemics in Kenya","volume":"285","author":"Linthicum","year":"1999","journal-title":"Science"},{"key":"ref_303","first-page":"16","article-title":"Global climate change and the emergence\/re-emergence of infectious diseases","volume":"293","author":"Zell","year":"2004","journal-title":"Int. J. Med. Microbiol."},{"key":"ref_304","doi-asserted-by":"crossref","first-page":"4423","DOI":"10.1128\/JVI.03676-13","article-title":"Measles vaccination of nonhuman primates provides partial protection against infection with canine distemper virus","volume":"88","author":"Ludlow","year":"2014","journal-title":"J. Virol."},{"key":"ref_305","doi-asserted-by":"crossref","unstructured":"Otsuki, N., Nakatsu, Y., Kubota, T., Sekizuka, T., Seki, F., Sakai, K., Kuroda, M., Yamaguchi, R., and Takeda, M. (2013). The V protein of canine distemper virus is required for virus replication in human epithelial cells. PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0082343"},{"key":"ref_306","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1186\/s12985-019-1136-6","article-title":"Tropism and molecular pathogenesis of canine distemper virus","volume":"16","author":"Canal","year":"2019","journal-title":"Virol. J."},{"key":"ref_307","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1016\/j.onehlt.2017.03.004","article-title":"A framework for One Health research","volume":"3","author":"Lebov","year":"2017","journal-title":"One Health"},{"key":"ref_308","doi-asserted-by":"crossref","unstructured":"Mackenzie, J.S., and Jeggo, M. (2019). The One Health Approach-Why Is It So Important?. Trop Med. Infect. Dis., 4.","DOI":"10.3390\/tropicalmed4020088"},{"key":"ref_309","doi-asserted-by":"crossref","unstructured":"El Zowalaty, M.E., and J\u00e4rhult, J.D. (2020). From SARS to COVID-19: A previously unknown SARS-CoV-2 virus of pandemic potential infecting humans\u2013Call for a One Health approach. One Health.","DOI":"10.1016\/j.onehlt.2020.100124"},{"key":"ref_310","doi-asserted-by":"crossref","unstructured":"Andersen, K.G., Rambaut, A., Lipkin, W.I., Holmes, E.C., and Garry, R.F. (2020). The proximal origin of SARS-CoV-2. Nat. Med.","DOI":"10.1038\/s41591-020-0820-9"},{"key":"ref_311","unstructured":"(2020, April 15). Coronavirus COVID-19 Global Cases by Johns Hopkins, The Center for Systems Science and Engineering (CSSE). Available online: https:\/\/gisanddata.maps.arcgis.com\/apps\/opsdashboard\/index.html#\/bda7594740fd40299423467b48e9ecf6."},{"key":"ref_312","unstructured":"World Health Organization (2019). Novel Coronavirus (2019-nCoV) Situation Report-51, World Health Organization."},{"key":"ref_313","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1377\/hlthaff.26.4.1069","article-title":"Global infectious disease surveillance and health intelligence","volume":"26","author":"Morse","year":"2007","journal-title":"Health Aff. 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