{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,8]],"date-time":"2026-09-08T12:10:55Z","timestamp":1788869455024,"version":"build-2803163510"},"reference-count":131,"publisher":"MDPI AG","issue":"17","license":[{"start":{"date-parts":[[2026,9,3]],"date-time":"2026-09-03T00:00:00Z","timestamp":1788393600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100012166","name":"National Key R&D Program of China","doi-asserted-by":"publisher","award":["2025YFD2300103-01"],"award-info":[{"award-number":["2025YFD2300103-01"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"name":"China Agriculture Research System","award":["CARS-16"],"award-info":[{"award-number":["CARS-16"]}]},{"award":["CARS-16"],"award-info":[{"award-number":["CARS-16"]}],"id":[{"id":"https:\/\/ror.org\/03p5eky76","id-type":"ROR","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Plants"],"abstract":"<jats:p>The rhizosphere microbiome, the plant\u2019s \u201csecond genome\u201d is pivotal for crop nutrient acquisition, health, and stress responses. While fertilization ensures high agricultural yields, a key challenge is reshaping this microbiome to boost crop performance. This review synthesizes how mineral, organic, and bio-organic\/microbial inoculant fertilizers affect rhizosphere microbial structure, diversity, and function. Long-term excessive mineral fertilizers (especially nitrogen) reduce microbial diversity, diminish beneficial groups (e.g., diazotrophs, PGPR), and disrupt microbial networks via soil acidification and altered root exudates, causing continuous cropping obstacles. In contrast, organic fertilizers improve soil microenvironments, maintaining high microbial diversity, enriching beneficial taxa (e.g., Proteobacteria, Actinobacteria), and enhancing community complexity. Bio-organic fertilizers\/microbial inoculants \u201cengineer\u201d the microbiome by introducing exogenous beneficial microbes (e.g., Bacillus, Pseudomonas, AMF), directly promoting growth, suppressing diseases, and \u201creconditioning\u201d indigenous beneficial communities. We also clarify how fertilization regulates plant-microbe dialog via root exudates and rhizosphere chemistry (e.g., pH, ion balance), discuss current challenges (causality, lab-to-field translation, genotype-microbiome-fertilization interactions), and outline future directions. Integrating rhizosphere microbiome management into fertilization is crucial for reducing chemical fertilizer reliance and advancing agricultural green transformation.<\/jats:p>","DOI":"10.3390\/plants15172711","type":"journal-article","created":{"date-parts":[[2026,9,3]],"date-time":"2026-09-03T16:21:21Z","timestamp":1788452481000},"page":"2711","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["The Rhizosphere Microbiome: A Key Mediator of Crop Responses to Fertilization Strategies"],"prefix":"10.3390","volume":"15","author":[{"given":"Zhihui","family":"Zhao","sequence":"first","affiliation":[{"name":"International Magnesium Institute, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 510220, China"},{"name":"Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences, Guangzhou 510316, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7273-9264","authenticated-orcid":false,"given":"Qihua","family":"Wu","sequence":"additional","affiliation":[{"name":"Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences, Guangzhou 510316, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zerong","family":"Sun","sequence":"additional","affiliation":[{"name":"Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences, Guangzhou 510316, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenling","family":"Zhou","sequence":"additional","affiliation":[{"name":"Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences, Guangzhou 510316, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junhua","family":"Ao","sequence":"additional","affiliation":[{"name":"Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences, Guangzhou 510316, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,9,3]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/s41579-020-0412-1","article-title":"Plant-microbiome interactions: From community assembly to plant health","volume":"18","author":"Trivedi","year":"2020","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"478","DOI":"10.1016\/j.tplants.2012.04.001","article-title":"The rhizosphere microbiome and plant health","volume":"17","author":"Berendsen","year":"2012","journal-title":"Trends Plant Sci."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.micres.2017.11.004","article-title":"Does plant-Microbe interaction confer stress tolerance in plants: A review?","volume":"207","author":"Kumar","year":"2018","journal-title":"Microbiol. Res."},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"2401","DOI":"10.1111\/nph.19697","article-title":"Dissection of rhizosphere microbiome and exploiting strategies for sustainable agriculture","volume":"242","author":"Xun","year":"2024","journal-title":"New Phytol."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"eads2506","DOI":"10.1126\/science.ads2506","article-title":"Steering plant-soil feedback for sustainable agriculture","volume":"389","author":"Wang","year":"2025","journal-title":"Science"},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1038\/s41579-024-01079-1","article-title":"Harnessing the plant microbiome for sustainable crop production","volume":"23","author":"Compant","year":"2025","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_7","doi-asserted-by":"crossref","unstructured":"Lyu, H., Li, Y., Wang, Y., Wang, P., Shang, Y., Yang, X., Wang, F., and Yu, A. (2024). Drive soil nitrogen transformation and improve crop nitrogen absorption and utilization\u2014A review of green manure applications. Front. Plant Sci., 14.","DOI":"10.3389\/fpls.2023.1305600"},{"key":"ref_8","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1016\/j.molp.2023.03.009","article-title":"Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes","volume":"16","author":"Zhou","year":"2023","journal-title":"Mol. Plant"},{"key":"ref_9","doi-asserted-by":"crossref","unstructured":"Mihoub, A., Ahmad, I., and Radicetti, E. (2023). Alternative fertilizer harnessing plant-microbe interactions (AFPMI) for improved soil and plantnutrient management. Front. Plant Sci., 14.","DOI":"10.3389\/fpls.2023.1333927"},{"key":"ref_10","doi-asserted-by":"crossref","unstructured":"Xing, Y., Zhang, X., and Wang, X. (2024). Enhancing soil health and crop yields through water-fertilizer coupling technology. Front. Sustain. Food Syst., 8.","DOI":"10.3389\/fsufs.2024.1494819"},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"115846","DOI":"10.1016\/j.geoderma.2022.115846","article-title":"Metagenomics reveals divergent functional profiles of soil carbon and nitrogen cycling under long-term addition of chemical and organic fertilizers in the black soil region","volume":"418","author":"Hu","year":"2022","journal-title":"Geoderma"},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"109019","DOI":"10.1016\/j.soilbio.2023.109019","article-title":"Microbial community succession in soil is mainly driven by carbon and nitrogen contents rather than phosphorus and sulphur contents","volume":"180","author":"Tang","year":"2023","journal-title":"Soil Biol. Biochem."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"2393","DOI":"10.1002\/ldr.3919","article-title":"Bacterial communities as indicators of soil health under a continuous cropping system","volume":"32","author":"Guiying","year":"2021","journal-title":"Land Degrad. Dev."},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jare.2023.11.028","article-title":"Effects of microbial agent and microbial fertilizer input on soil microbial community structure and diversity in a peanut continuous cropping system","volume":"64","author":"Ahsan","year":"2024","journal-title":"J. Adv. Res."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/s42773-023-00296-w","article-title":"Biochar and organic fertilizer applications enhance soil functional microbial abundance and agroecosystem multifunctionality","volume":"6","author":"Hu","year":"2024","journal-title":"Biochar"},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"109945","DOI":"10.1016\/j.soilbio.2025.109945","article-title":"Long-term manure application enhances carbon use efficiency in soil aggregates by regulating microbial communities in cropland","volume":"210","author":"Sun","year":"2025","journal-title":"Soil Biol. Biochem."},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1300\/J144v03n01_13","article-title":"Soil-Root Interface Water Potential in Sweet Corn as Affected by Organic Fertilizer and a Microbial Inoculant","volume":"3","author":"Xu","year":"2001","journal-title":"J. Crop Prod."},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"2290","DOI":"10.1007\/s11427-024-2876-0","article-title":"Root exudates and microbial metabolites: Signals and nutrients in plant-microbe interactions","volume":"68","author":"Fan","year":"2025","journal-title":"Sci. China-Life Sci."},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/j.tplants.2017.09.003","article-title":"Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?","volume":"23","author":"Sasse","year":"2018","journal-title":"Trends Plant Sci."},{"key":"ref_20","doi-asserted-by":"crossref","first-page":"2924","DOI":"10.1038\/s41467-024-47159-x","article-title":"Legume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification","volume":"15","author":"Qiao","year":"2024","journal-title":"Nat. Commun."},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"122337","DOI":"10.1016\/j.envpol.2023.122337","article-title":"Triple-transgenic soybean in conjunction with glyphosate drive patterns in the rhizosphere microbial community assembly","volume":"335","author":"Aliya","year":"2023","journal-title":"Environ. Pollut."},{"key":"ref_22","doi-asserted-by":"crossref","unstructured":"Ma, Y., Wang, H., Kang, Y., and Wen, T. (2025). Small molecule metabolites drive plant rhizosphere microbial community assembly patterns. Front. Microbiol., 16.","DOI":"10.3389\/fmicb.2025.1503537"},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1007\/s00253-024-13106-5","article-title":"Fertilization regime changes rhizosphere microbial community assembly and interaction in Phoebe bournei plantations","volume":"108","author":"Yan","year":"2024","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"836","DOI":"10.1038\/s41467-022-28448-9","article-title":"Rhizosphere bacteriome structure and functions","volume":"13","author":"Ling","year":"2022","journal-title":"Nat. Commun."},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"807","DOI":"10.1146\/annurev-arplant-050312-120106","article-title":"Structure and Functions of the Bacterial Microbiota of Plants","volume":"64","author":"Bulgarelli","year":"2013","journal-title":"Annu. Rev. Plant Biol."},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"E2450","DOI":"10.1073\/pnas.1616148114","article-title":"Simplified and representative bacterial community of maize roots","volume":"114","author":"Niu","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"1130","DOI":"10.1038\/s41564-025-01973-1","article-title":"Seed-borne bacteria drive wheat rhizosphere microbiome assembly via niche partitioning and facilitation","volume":"10","author":"Keel","year":"2025","journal-title":"Nat. Microbiol."},{"key":"ref_28","doi-asserted-by":"crossref","unstructured":"Ma, H.Z., Li, P.P., Liu, X.W., Li, C., Zhang, S.K., Wang, X.H., and Tao, X. (2022). Poly-\u03b3-glutamic acid enhanced the drought resistance of maize by improving photosynthesis and affecting the rhizosphere microbial community. BMC Plant Biol., 22.","DOI":"10.1186\/s12870-021-03392-w"},{"key":"ref_29","doi-asserted-by":"crossref","first-page":"108736","DOI":"10.1016\/j.agwat.2024.108736","article-title":"Effects of PGPR and \u03b3-PGA on maize growth and rhizosphere microbial community in saline soil","volume":"295","author":"Zeng","year":"2024","journal-title":"Agric. Water Manag."},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"16992","DOI":"10.7717\/peerj.16992","article-title":"Effects of plant growth-promoting rhizobacteria on blueberry growth and rhizosphere soil microenvironment","volume":"12","author":"Wang","year":"2024","journal-title":"PeerJ"},{"key":"ref_31","doi-asserted-by":"crossref","unstructured":"Chauhan, P., Sharma, N., Tapwal, A., Kumar, A., Verma, G.S., Meena, M., Seth, C.S., and Swapnil, P. (2023). Soil Microbiome: Diversity, Benefits and Interactions with Plants. Sustainability, 15.","DOI":"10.3390\/su151914643"},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"109768","DOI":"10.1016\/j.soilbio.2025.109768","article-title":"Unlocking soil health: Are microbial functional genes effective indicators?","volume":"204","author":"Jia","year":"2025","journal-title":"Soil Biol. Biochem."},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"e01052-20","DOI":"10.1128\/msystems.01052-20","article-title":"Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling","volume":"6","author":"Jiao","year":"2021","journal-title":"Msystems"},{"key":"ref_34","doi-asserted-by":"crossref","unstructured":"Wang, T., Xu, J., Chen, J., Liu, P., Hou, X., Yang, L., and Zhang, L. (2024). Progress in Microbial Fertilizer Regulation of Crop Growth and Soil Remediation Research. Plants, 13.","DOI":"10.3390\/plants13030346"},{"key":"ref_35","doi-asserted-by":"crossref","first-page":"e70053","DOI":"10.1002\/imt2.70053","article-title":"Bacterial social interactions in synthetic Bacillus consortia enhance plant growth","volume":"4","author":"Liu","year":"2025","journal-title":"Imeta"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"109231","DOI":"10.1016\/j.soilbio.2023.109231","article-title":"Core species impact plant health by enhancing soil microbial cooperation and network complexity during community coalescence","volume":"188","author":"Qiao","year":"2024","journal-title":"Soil Biol. Biochem."},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"109396","DOI":"10.1016\/j.soilbio.2024.109396","article-title":"From rhizosphere to detritusphere\u2014Soil structure formation driven by plant roots and the interactions with soil biota","volume":"193","author":"Mueller","year":"2024","journal-title":"Soil Biol. Biochem."},{"key":"ref_38","doi-asserted-by":"crossref","unstructured":"Bai, Y.C., Chang, Y.Y., Hussain, M., Lu, B., Zhang, J.P., Song, X.B., Lei, X.S., and Pei, D. (2020). Soil Chemical and Microbiological Properties Are Changed by Long-Term Chemical Fertilizers That Limit Ecosystem Functioning. Microorganisms, 8.","DOI":"10.3390\/microorganisms8050694"},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"114999","DOI":"10.1016\/j.geoderma.2021.114999","article-title":"Negative impacts of excessive nitrogen fertilization on the abundance and diversity of diazotrophs in black soil under maize monocropping","volume":"393","author":"Chen","year":"2021","journal-title":"Geoderma"},{"key":"ref_40","doi-asserted-by":"crossref","unstructured":"Kavamura, V.N., Hayat, R., Clark, I.M., Rossmann, M., Mendes, R., Hirsch, P.R., and Mauchline, T.H. (2018). Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. Front. Microbiol., 9.","DOI":"10.3389\/fmicb.2018.01074"},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1007\/s00374-020-01435-2","article-title":"Legacy effects of 8-year nitrogen inputs on bacterial assemblage in wheat rhizosphere","volume":"56","author":"Liu","year":"2020","journal-title":"Biol. Fertil. Soils"},{"key":"ref_42","doi-asserted-by":"crossref","unstructured":"Reid, T.E., Kavamura, V.N., Abadie, M., Torres-Ballesteros, A., Pawlett, M., Clark, I.M., Harris, J., and Mauchline, T.H. (2021). Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria. Front. Microbiol., 12.","DOI":"10.3389\/fmicb.2021.642587"},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1016\/j.soilbio.2017.06.019","article-title":"Impact of 25 years of inorganic fertilization on diazotrophic abundance and community structure in an acidic soil in southern China","volume":"113","author":"Wang","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"1668","DOI":"10.1038\/s41467-024-45925-5","article-title":"Dynamic root microbiome sustains soybean productivity under unbalanced fertilization","volume":"15","author":"Wang","year":"2024","journal-title":"Nat. Commun."},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"4084","DOI":"10.1007\/s42729-022-01009-1","article-title":"The Influence of Plants on the Migration and Transformation of Nitrogen in Plant-Soil Systems: A Review","volume":"22","author":"Zhang","year":"2022","journal-title":"J. Soil Sci. Plant Nutr."},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"108135","DOI":"10.1016\/j.agee.2022.108135","article-title":"Effect of fertilization regimes on continuous cropping growth constraints in watermelon is associated with abundance of key ecological clusters in the rhizosphere","volume":"339","author":"Zhang","year":"2022","journal-title":"Agric. Ecosyst. Environ."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1016\/j.apsoil.2016.07.009","article-title":"Nitrogen fertilizer rate affects root exudation, the rhizosphere microbiome and nitrogen-use-efficiency of maize","volume":"107","author":"Zhu","year":"2016","journal-title":"Appl. Soil Ecol."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1186\/s13213-020-01591-8","article-title":"Effects of inorganic and organic treatments on the microbial community of maize rhizosphere by a shotgun metagenomics approach","volume":"70","author":"Enebe","year":"2020","journal-title":"Ann. Microbiol."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"103506","DOI":"10.1016\/j.apsoil.2020.103506","article-title":"Long-term phosphorus deficiency decreased bacterial-fungal network complexity and efficiency across three soil types in China as revealed by network analysis","volume":"148","author":"Ma","year":"2020","journal-title":"Appl. Soil Ecol."},{"key":"ref_50","doi-asserted-by":"crossref","unstructured":"Wu, Q.H., Chen, D.W., Zhou, W.L., Zhang, X.X., and Ao, J.H. (2022). Long-term fertilization has different impacts on bacterial communities and phosphorus forms in sugarcane rhizosphere and bulk soils under low-P stress. Front. Plant Sci., 13.","DOI":"10.3389\/fpls.2022.1019042"},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"1002","DOI":"10.1016\/j.tplants.2025.06.001","article-title":"The chemical interaction between plants and the rhizosphere microbiome","volume":"30","author":"Bouwmeester","year":"2025","journal-title":"Trends Plant Sci."},{"key":"ref_52","doi-asserted-by":"crossref","unstructured":"Zeng, X.N., Wang, Q., Song, Q.L., Liang, Q.X., Sun, Y., and Song, F.Q. (2025). Effects of Different Nitrogen Fertilizer Application Rates on Soil Microbial Structure in Paddy Soil When Combined with Rice Straw Return. Microorganisms, 13.","DOI":"10.3390\/microorganisms13010079"},{"key":"ref_53","doi-asserted-by":"crossref","first-page":"16463","DOI":"10.1021\/acs.est.5c06493","article-title":"Drastic Variations in Chemical Composition of Organic Inputs: Implications for Organic Fertilization","volume":"59","author":"Bachelder","year":"2025","journal-title":"Environ. Sci. Technol."},{"key":"ref_54","doi-asserted-by":"crossref","unstructured":"Sedl\u00e1r, O., Bal\u00edk, J., Cerny, J., Kulh\u00e1nek, M., and Smatanov\u00e1, M. (2023). Long-Term Application of Organic Fertilizers in Relation to Soil Organic Matter Quality. Agronomy, 13.","DOI":"10.3390\/agronomy13010175"},{"key":"ref_55","doi-asserted-by":"crossref","unstructured":"Guo, C., Hao, J., Ma, S., Hong, J., Wang, S., Zhang, L., Zhang, B., Ding, H., Liu, X., and Xing, S. (2025). Effects of microbial fertilizers on tobacco plants and soil microbial community during the prosperously growing stage. Front. Soil Sci., 5.","DOI":"10.3389\/fsoil.2025.1666961"},{"key":"ref_56","doi-asserted-by":"crossref","unstructured":"Ayaz, M., Feiziene, D., Feiza, V., Tilvikiene, V., Baltrenaite-Gediene, E., and Khan, A. (2022). The Impact of Swine Manure Biochar on the Physical Properties and Microbial Activity of Loamy Soils. Plants, 11.","DOI":"10.3390\/plants11131729"},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"115859","DOI":"10.1016\/j.jenvman.2022.115859","article-title":"Altering microbial community for improving soil properties and agricultural sustainability during a 10-year maize-green manure intercropping in Northwest China","volume":"321","author":"Ablimit","year":"2022","journal-title":"J. Environ. Manag."},{"key":"ref_58","doi-asserted-by":"crossref","first-page":"108599","DOI":"10.1016\/j.soilbio.2022.108599","article-title":"Acidic amelioration of soil amendments improves soil health by impacting rhizosphere microbial assemblies","volume":"167","author":"Chen","year":"2022","journal-title":"Soil Biol. Biochem."},{"key":"ref_59","doi-asserted-by":"crossref","first-page":"103492","DOI":"10.1016\/j.ejsobi.2023.103492","article-title":"Long-term organic fertilizer and biofertilizer application strengthens the associations between soil quality index, network complexity, and walnut yield","volume":"116","author":"Du","year":"2023","journal-title":"Eur. J. Soil Biol."},{"key":"ref_60","doi-asserted-by":"crossref","unstructured":"Hu, Z.M., Ji, L.F., Wan, Q., Li, H., Li, R.L., and Yang, Y.Y. (2022). Short-Term Effects of Bio-Organic Fertilizer on Soil Fertility and Bacterial Community Composition in Tea Plantation Soils. Agronomy, 12.","DOI":"10.3390\/agronomy12092168"},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1016\/j.soilbio.2016.10.023","article-title":"Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria","volume":"104","author":"Zhang","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref_62","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1016\/j.apsoil.2017.11.023","article-title":"Organic amendments shift the phosphorus-correlated microbial co-occurrence pattern in the peanut rhizosphere network during long-term fertilization regimes","volume":"124","author":"Chen","year":"2018","journal-title":"Appl. Soil Ecol."},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"100264","DOI":"10.1016\/j.rhisph.2020.100264","article-title":"Application of bio-organic fertilizer, not biochar, in degraded red soil improves soil nutrients and plant growth","volume":"16","author":"Wu","year":"2020","journal-title":"Rhizosphere"},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"103426","DOI":"10.1016\/j.apsoil.2019.103426","article-title":"Long-term organic fertilization improves the productivity of kiwifruit (Actinidia chinensis Planch.) through increasing rhizosphere microbial diversity and network complexity","volume":"147","author":"Liu","year":"2020","journal-title":"Appl. Soil Ecol."},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1007\/s11104-023-06445-1","article-title":"Green manure substitution for potassium fertilizer promotes agro-ecosystem multifunctionality via triggering interactions among soil, plant and rhizosphere microbiome","volume":"498","author":"Zeng","year":"2024","journal-title":"Plant Soil"},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jare.2022.07.009","article-title":"Organic fertilization enhances the resistance and resilience of soil microbial communities under extreme drought","volume":"47","author":"Sun","year":"2023","journal-title":"J. Adv. Res."},{"key":"ref_67","doi-asserted-by":"crossref","unstructured":"Chen, F., He, X.Y., Liu, Q.M., Gao, F.L., Zeng, C.Z., and Li, D.J. (2025). Bio-Organic Fertilizer Modulates the Rhizosphere Microbiome to Enhance Sugarcane Growth and Suppress Smut Disease. Microorganisms, 13.","DOI":"10.3390\/microorganisms13112563"},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1186\/s40793-025-00791-6","article-title":"Organic fertilizers increase microbial community diversity and stability slowing down the transformation process of nutrient cycling","volume":"20","author":"Chen","year":"2025","journal-title":"Environ. Microbiome"},{"key":"ref_69","doi-asserted-by":"crossref","unstructured":"Jiang, H.F., Wu, J.Y., Guan, J.L., Zhao, F.Z., Tan, L.H., and Chen, H.M. (2025). Biochar is an innovative strategy for reconstructing microbial communities and enhancing nutrient utilization efficiency in acidic red soils. Front. Microbiol., 16.","DOI":"10.3389\/fmicb.2025.1622408"},{"key":"ref_70","first-page":"100269","article-title":"Photosynthetic activity and growth of poblano pepper biofertilized with plant growth promoting rhizobacteria and arbuscular mycorrhizal fungi","volume":"7","author":"Mancilla","year":"2024","journal-title":"Curr. Res. Microb. Sci."},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1186\/s43170-023-00168-0","article-title":"Harnessing of plant growth-promoting rhizobacteria and arbuscular mycorrhizal fungi in agroecosystem sustainability","volume":"4","author":"Adeyinka","year":"2023","journal-title":"CABI Agric. Biosci."},{"key":"ref_72","doi-asserted-by":"crossref","unstructured":"Lee, H., Kim, D.U., Son, J., Kim, S.B., and Ka, J.O. (2020). Environmental Risk Assessment of Living Modified Microorganisms (LMM) on the Indigenous Microbial Community. Sustainability, 12.","DOI":"10.3390\/su12145566"},{"key":"ref_73","doi-asserted-by":"crossref","unstructured":"Yang, F., Han, J.J., Lin, R.Z., Yin, Y., Deng, X.X., Li, Y.M., Lin, J.X., and Wang, J.H. (2024). Regulation of the Rhizosphere Microenvironment by Arbuscular Mycorrhizal Fungi to Mitigate the Effects of Cadmium Contamination on Perennial Ryegrass (Lolium perenne L.). Microorganisms, 12.","DOI":"10.3390\/microorganisms12112335"},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/j.soilbio.2016.10.008","article-title":"Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease","volume":"104","author":"Fu","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref_75","doi-asserted-by":"crossref","first-page":"752","DOI":"10.1111\/nph.18943","article-title":"Home-based microbial solution to boost crop growth in low-fertility soil","volume":"239","author":"Jiang","year":"2023","journal-title":"New Phytol."},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1016\/j.soilbio.2017.07.016","article-title":"Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome","volume":"114","author":"Xiong","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref_77","doi-asserted-by":"crossref","first-page":"1558","DOI":"10.1111\/nph.18221","article-title":"Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities","volume":"235","author":"Deng","year":"2022","journal-title":"New Phytol."},{"key":"ref_78","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1186\/s40168-020-00892-z","article-title":"Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression","volume":"8","author":"Tao","year":"2020","journal-title":"Microbiome"},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"3968","DOI":"10.1111\/pce.15395","article-title":"Soil Microbial Mechanisms to Improve Pear Seedling Growth by Applying Bacillus and Trichoderma-Amended Biofertilizers","volume":"48","author":"Ma","year":"2025","journal-title":"Plant Cell Environ."},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"163708","DOI":"10.1016\/j.scitotenv.2023.163708","article-title":"Synergistic mechanisms of bioorganic fertilizer and AMF driving rhizosphere bacterial community to improve phytoremediation efficiency of multiple HMs-contaminated saline soil","volume":"883","author":"Lu","year":"2023","journal-title":"Sci. Total Environ."},{"key":"ref_81","doi-asserted-by":"crossref","first-page":"138959","DOI":"10.1016\/j.jhazmat.2025.138959","article-title":"Pseudomonas plecoglossicida inoculation reshapes rhizosphere microbiome for BDE-47 dissipation in the alfalfa rhizosphere","volume":"495","author":"Qi","year":"2025","journal-title":"J. Hazard. Mater."},{"key":"ref_82","doi-asserted-by":"crossref","unstructured":"Yan, H.K., Zhang, C.C., Nai, G.J., Ma, L., Lai, Y., Pu, Z.H., Ma, S.Y., and Li, S. (2025). Microbial Inoculant GB03 Increased the Yield and Quality of Grape Fruit Under Salt-Alkali Stress by Changing Rhizosphere Microbial Communities. Foods, 14.","DOI":"10.3390\/foods14050711"},{"key":"ref_83","first-page":"629","article-title":"Bioorganic fertilizer drives the root system architecture and rhizosphere microbiome interactions to stimulate aboveground growth of pear trees in acid red soil","volume":"516","author":"Kang","year":"2025","journal-title":"J. Supercomput."},{"key":"ref_84","doi-asserted-by":"crossref","first-page":"103947","DOI":"10.1016\/j.eti.2024.103947","article-title":"Arbuscular mycorrhizal fungi enhance drought resistance and alter microbial communities in maize rhizosphere soil","volume":"37","author":"Li","year":"2025","journal-title":"Environ. Technol. Innov."},{"key":"ref_85","doi-asserted-by":"crossref","unstructured":"Zeng, W.L., Xiang, D., Li, X.M., Gao, Q., Chen, Y.D., Wang, K.M., Qian, Y.Y., Wang, L.P., Li, J., and Mi, Q.L. (2025). Effects of combined inoculation of arbuscular mycorrhizal fungi and plant growth-promoting rhizosphere bacteria on seedling growth and rhizosphere microecology. Front. Microbiol., 15.","DOI":"10.3389\/fmicb.2024.1475485"},{"key":"ref_86","doi-asserted-by":"crossref","first-page":"103900","DOI":"10.1016\/j.eti.2024.103900","article-title":"Synergistic effects of AMF and PGPR on improving saline-alkaline tolerance of Leymus chinensis by strengthening the link between rhizosphere metabolites and microbiomes","volume":"36","author":"Zhang","year":"2024","journal-title":"Environ. Technol. Innov."},{"key":"ref_87","doi-asserted-by":"crossref","unstructured":"Amadou, A., Song, A.L., Tang, Z.X., Li, Y.L., Wang, E.Z., Lu, Y.Q., Liu, X.D., Yi, K.K., Zhang, B., and Fan, F.L. (2020). The Effects of Organic and Mineral Fertilization on Soil Enzyme Activities and Bacterial Community in the Below- and Above-Ground Parts of Wheat. Agronomy, 10.","DOI":"10.3390\/agronomy10101452"},{"key":"ref_88","doi-asserted-by":"crossref","unstructured":"Shi, Y.W., Niu, X.X., Chen, B.Z., Pu, S.H., Ma, H.H., Li, P., Feng, G.P., and Ma, X.W. (2023). Chemical fertilizer reduction combined with organic fertilizer affects the soil microbial community and diversity and yield of cotton. Front. Microbiol., 14.","DOI":"10.3389\/fmicb.2023.1295722"},{"key":"ref_89","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1007\/s42729-020-00365-0","article-title":"Variation of Soil Bacterial and Fungal Communities from Fluvo-Aquic Soil Under Chemical Fertilizer Reduction Combined with Organic Materials in North China Plain","volume":"21","author":"Wu","year":"2021","journal-title":"J. Soil Sci. Plant Nutr."},{"key":"ref_90","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1016\/j.apsoil.2019.04.014","article-title":"Reshaping the rhizosphere microbiome by bio-organic amendment to enhance crop yield in a maize-cabbage rotation system","volume":"142","author":"Qiao","year":"2019","journal-title":"Appl. Soil Ecol."},{"key":"ref_91","doi-asserted-by":"crossref","unstructured":"Yang, Y.F., Ye, C.H., Zhang, W., Zhu, X.H., Li, H.H., Yang, D.H., Ahmed, W., and Zhao, Z.X. (2023). Elucidating the impact of biochar with different carbon\/nitrogen ratios on soil biochemical properties and rhizosphere bacterial communities of flue-cured tobacco plants. Front. Plant Sci., 14.","DOI":"10.3389\/fpls.2023.1250669"},{"key":"ref_92","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1007\/s42773-025-00434-6","article-title":"Biochar amendment modulates root metabolome and rhizosphere microbiome of wheat","volume":"7","author":"Yang","year":"2025","journal-title":"Biochar"},{"key":"ref_93","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1007\/s11104-025-07450-2","article-title":"Multi-omic profiling reveals green manuring with maize enhances fruit quality of strawberry via the microbiome-plant-metabolite axis","volume":"514","author":"Fu","year":"2025","journal-title":"Plant Soil"},{"key":"ref_94","doi-asserted-by":"crossref","first-page":"106275","DOI":"10.1016\/j.apsoil.2025.106275","article-title":"Plant growth-promoting bacteria reshape rhizosphere microbial networks and biochemical properties to drive sustainable Zea mays growth","volume":"213","author":"Cheng","year":"2025","journal-title":"Appl. Soil Ecol."},{"key":"ref_95","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1186\/s13059-025-03621-7","article-title":"Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale","volume":"26","author":"Francioli","year":"2025","journal-title":"Genome Biol."},{"key":"ref_96","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.3934\/microbiol.2025046","article-title":"Understanding plant-microorganism interactions: The key roles of soil, rhizosphere, and direct and indirect mechanisms","volume":"11","author":"Hnini","year":"2025","journal-title":"AIMS Microbiol."},{"key":"ref_97","doi-asserted-by":"crossref","first-page":"73","DOI":"10.26651\/allelo.j\/2019-47-1-1220","article-title":"Effects of cucumber root exudates components on Fusarium spp. community structure and abundance","volume":"47","author":"Jin","year":"2019","journal-title":"Allelopath. J."},{"key":"ref_98","doi-asserted-by":"crossref","first-page":"270","DOI":"10.56557\/pcbmb\/2025\/v26i9-109828","article-title":"Biochemical Interactions in the Rhizosphere: Roles of Root Exudates, Flavonoids and Phytoalexins inPlant\u2013Microbe Communication","volume":"26","author":"Suresh","year":"2025","journal-title":"Plant Cell Biotechnol. Mol. Biol."},{"key":"ref_99","doi-asserted-by":"crossref","first-page":"805","DOI":"10.1007\/s00374-025-01895-4","article-title":"Nitrate supply increases the resistance of cucumber to Fusarium wilt disease by regulating root exudation","volume":"61","author":"Zeng","year":"2025","journal-title":"Biol. Fertil. Soils"},{"key":"ref_100","doi-asserted-by":"crossref","unstructured":"Stirnemann, E.M., and Sasse, J. (2025). How to harness the effects of exudates and microbes that support beneficial plant-plant interactions for sustainable agriculture. PLoS Biol., 23.","DOI":"10.1371\/journal.pbio.3003416"},{"key":"ref_101","doi-asserted-by":"crossref","unstructured":"Li, Y.F., Zhang, Y., He, Q.S., Liu, S.S., Ren, F., and Lu, A.X. (2025). Effects of Root Exudates on Ecological Function and Nitrogen Utilization Strategy of Orchard Multi-Planting System. Agronomy, 15.","DOI":"10.3390\/agronomy15092173"},{"key":"ref_102","doi-asserted-by":"crossref","first-page":"e17303","DOI":"10.7717\/peerj.17303","article-title":"Anthropogenic fertilization influences a shift in barley rhizosphere microbial communities","volume":"12","author":"Enagbonma","year":"2024","journal-title":"PeerJ"},{"key":"ref_103","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1007\/s00425-025-04844-5","article-title":"The inoculation with Pseudomonas simiae WCS417 strain promotes growth and the induction of iron-deficiency responses in cucumber plants (Cucumis sativus L.)","volume":"262","author":"Aparicio","year":"2025","journal-title":"Planta"},{"key":"ref_104","first-page":"1289","article-title":"Isolation and Identification of PGPR Strain and its Effect on Soybean Growth and Soil Bacterial Community Composition","volume":"20","author":"Ma","year":"2018","journal-title":"Int. J. Agric. Biol."},{"key":"ref_105","doi-asserted-by":"crossref","unstructured":"Yang, J., Han, X.D., Li, Q., Wang, D., Li, Y.K., and Zhang, Z.Y. (2025). Potassium fertilization modulates potato (Solanum tuberosum L. V7) yield and rhizosphere microbiome dynamics. Front. Plant Sci., 16.","DOI":"10.3389\/fpls.2025.1618600"},{"key":"ref_106","doi-asserted-by":"crossref","unstructured":"Wu, Q., Shen, P., Liang, H.Y., Liu, M., Chen, D.X., and Yang, L.Y. (2025). Targeted Phosphorus Fertilization in the Peanut Pod Zone Modulates Pod Nutrient Allocation and Reshapes the Geocarposphere Microbial Community. Agronomy, 15.","DOI":"10.3390\/agronomy15122850"},{"key":"ref_107","doi-asserted-by":"crossref","unstructured":"Debnath, S., Sorongpong, S., Das, N., Choure, K., Agnihotri, V.K., and Pandey, P. (2025). Sustainable lentil intensification in rice-fallow systems through bioaugmentation with atypical rhizobia and endophytes modulates rhizosphere and nodule microbiome dynamics. BMC Plant Biol., 25.","DOI":"10.1186\/s12870-025-07165-7"},{"key":"ref_108","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/j.jia.2025.02.051","article-title":"Maize-green manure intercropping improves maize yield and P uptake by shaping the responses of roots and soil","volume":"25","author":"Zhao","year":"2026","journal-title":"J. Integr. Agric."},{"key":"ref_109","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1007\/s11104-025-07732-9","article-title":"Mitigating obstacles to monocropping using integrated rhizosphere management","volume":"516","author":"Zhu","year":"2025","journal-title":"Plant Soil"},{"key":"ref_110","doi-asserted-by":"crossref","first-page":"108290","DOI":"10.1016\/j.plaphy.2023.108290","article-title":"Unveiling the significance of rhizosphere: Implications for plant growth, stress response, and sustainable agriculture","volume":"206","author":"Solomon","year":"2024","journal-title":"Plant Physiol. Biochem."},{"key":"ref_111","doi-asserted-by":"crossref","unstructured":"Shi, R., Wang, S., Xiong, B.J., Gu, H.Y., Wang, H.L., Ji, C., Jia, W.J., Horowitz, A.R., Zhen, W.J., and Ben Asher, J. (2022). Application of Bioorganic Fertilizer on Panax notoginseng Improves Plant Growth by Altering the Rhizosphere Microbiome Structure and Metabolism. Microorganisms, 10.","DOI":"10.3390\/microorganisms10020275"},{"key":"ref_112","doi-asserted-by":"crossref","unstructured":"Xu, T.Q., Ke, J.H., Wang, Y.F., Zhang, Y.Q., Xi, J., Wei, X.M., Ma, Y.Q., and Lin, Y.B. (2024). Silicon Fertilization Improves Sunflower Rhizosphere Microbial Community Structure and Reduces Parasitism by Orobanche cumana Wallr. Agronomy, 14.","DOI":"10.3390\/agronomy14061312"},{"key":"ref_113","doi-asserted-by":"crossref","unstructured":"Tang, J., Wu, H., Li, Y., and Chen, J. (2025). The Response Microbial of the Cucumber Rhizosphere Network Keystone Taxa of the Cucumber Rhizosphere to Continuous Fertilization. Microorganisms, 13.","DOI":"10.3390\/microorganisms13020451"},{"key":"ref_114","doi-asserted-by":"crossref","unstructured":"Qu, P., Wang, B.T., Qi, M.J., Lin, R., Chen, H.M., Xie, C., Zhang, Z.W., Qiu, J.C., Du, H.B., and Ge, Y. (2024). Medicinal Plant Root Exudate Metabolites Shape the Rhizosphere Microbiota. Int. J. Mol. Sci., 25.","DOI":"10.3390\/ijms25147786"},{"key":"ref_115","doi-asserted-by":"crossref","unstructured":"Yang, Y., Li, J.Q., Yang, B., Wang, L.L., Tang, W.Q., and Cha, L.L. (2026). Influence of root secretions of understory Chinese herbal medicines on the characterization of inter-root microbial communities. Front. Plant Sci., 16.","DOI":"10.3389\/fpls.2025.1697347"},{"key":"ref_116","doi-asserted-by":"crossref","first-page":"e0022622","DOI":"10.1128\/aem.00226-22","article-title":"Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function","volume":"88","author":"Seitz","year":"2022","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_117","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1038\/s41522-024-00503-x","article-title":"Disentangling direct vs indirect effects of microbiome manipulations in a habitat-forming marine holobiont","volume":"10","author":"McGrath","year":"2024","journal-title":"npj Biofilms Microbiomes"},{"key":"ref_118","doi-asserted-by":"crossref","first-page":"1329","DOI":"10.1007\/s11104-025-07800-0","article-title":"Effects of organic fertilizers on apple growth and drought resistance, soil properties and microbial diversity: A comparison of mature organic fertilizers and weathered coal organic fertilizers","volume":"516","author":"Li","year":"2025","journal-title":"Plant Soil"},{"key":"ref_119","doi-asserted-by":"crossref","first-page":"1291","DOI":"10.1016\/j.sjbs.2019.05.004","article-title":"Bacillus subtilis: A plant-growth promoting rhizobacterium that also impacts biotic stress","volume":"26","author":"Hashem","year":"2019","journal-title":"Saudi J. Biol. Sci."},{"key":"ref_120","doi-asserted-by":"crossref","first-page":"e01790-16","DOI":"10.1128\/mBio.01790-16","article-title":"Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression","volume":"7","author":"Jie","year":"2016","journal-title":"mBio"},{"key":"ref_121","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1093\/jpe\/rtaa018","article-title":"Importance of starting points in heterogeneous environments: Interactions between two clonal plants with contrasting spatial architectures","volume":"13","author":"Xue","year":"2020","journal-title":"J. Plant Ecol."},{"key":"ref_122","doi-asserted-by":"crossref","unstructured":"Luft, L., and Mazutti, M.A. (2025). Freeze and Spray Drying Technologies to Produce Solid Microbial Formulations for Sustainable Agriculture. Processes, 13.","DOI":"10.3390\/pr13072188"},{"key":"ref_123","doi-asserted-by":"crossref","first-page":"112439","DOI":"10.1016\/j.plantsci.2025.112439","article-title":"Early developmental shifts in root exudation profiles of five Zea mays L. genotypes","volume":"354","author":"Hafner","year":"2025","journal-title":"Plant Sci."},{"key":"ref_124","doi-asserted-by":"crossref","first-page":"101046","DOI":"10.1016\/j.rhisph.2025.101046","article-title":"Disruption of the endogenous indole glucosinolate pathway impacts the Arabidopsis thaliana root exudation profile and rhizobacterial community","volume":"33","author":"Bletz","year":"2025","journal-title":"Rhizosphere"},{"key":"ref_125","doi-asserted-by":"crossref","first-page":"113812","DOI":"10.1016\/j.scienta.2024.113812","article-title":"Evaluation of fertilization on microbial assembly, metabolites of root exudates and rhizosphere soil in tea plant","volume":"338","author":"Jiang","year":"2024","journal-title":"Sci. Hortic."},{"key":"ref_126","doi-asserted-by":"crossref","first-page":"113550","DOI":"10.1016\/j.knosys.2025.113550","article-title":"Optimizing fertilizer recommendations in precision agriculture: A novel defuzzification approach with adaptive intelligent optimization","volume":"321","author":"Harikumaran","year":"2025","journal-title":"Knowl.-Based Syst."},{"key":"ref_127","doi-asserted-by":"crossref","first-page":"13413","DOI":"10.1021\/acsomega.5c10740","article-title":"Nitrogen Fertilization Optimizes the Physicochemical Properties of Cactus Mucilage and the Biopolymeric Films Produced","volume":"11","author":"Soares","year":"2026","journal-title":"Acs Omega"},{"key":"ref_128","doi-asserted-by":"crossref","unstructured":"Wei, Z.H., Cao, H., Wang, C., Liu, H.J., Shen, Q.R., and Li, R. (2026). Exploration of Acid-Tolerant Peanut Varieties Associated with Key Beneficial Rhizosphere Microbiome and Their Plant Growth-Promoting Effects in Acidic Soil. Agronomy, 16.","DOI":"10.3390\/agronomy16030371"},{"key":"ref_129","doi-asserted-by":"crossref","unstructured":"Gonz\u00e1lez, M., Araya-Angel, J.P., Mu\u00f1oz, A., Alfaro-Flores, A., Cardinale, M., and Stoll, A. (2025). Genetic Diversification of Tomato and Agricultural Soil Management Shaped the Rhizospheric Microbiome of Tomato (Solanum lycopersicum). Microorganisms, 13.","DOI":"10.3390\/microorganisms13071550"},{"key":"ref_130","doi-asserted-by":"crossref","unstructured":"Sarsaiya, S., Yadav, A.N., Tiwari, P., and Singh, R. (2024). Editorial: Futuristic plant microbes biotechnology and bioengineering. Front. Microbiol., 15.","DOI":"10.3389\/fmicb.2024.1514583"},{"key":"ref_131","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1007\/s44307-026-00099-7","article-title":"Multiplex gene editing drives revolution in crop breeding: Overlaid editing of multiple genes and customization of complex traits","volume":"4","author":"Lin","year":"2026","journal-title":"Adv. Biotechnol."}],"container-title":["Plants"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2223-7747\/15\/17\/2711\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,8]],"date-time":"2026-09-08T11:37:23Z","timestamp":1788867443000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2223-7747\/15\/17\/2711"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,3]]},"references-count":131,"journal-issue":{"issue":"17","published-online":{"date-parts":[[2026,9]]}},"alternative-id":["plants15172711"],"URL":"https:\/\/doi.org\/10.3390\/plants15172711","relation":{},"ISSN":["2223-7747"],"issn-type":[{"value":"2223-7747","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,3]]}}}