{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T11:02:37Z","timestamp":1789383757485,"version":"build-2803163510"},"reference-count":146,"publisher":"MDPI AG","issue":"18","license":[{"start":{"date-parts":[[2026,9,12]],"date-time":"2026-09-12T00:00:00Z","timestamp":1789171200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32460506"],"award-info":[{"award-number":["32460506"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"award":["32460506"],"award-info":[{"award-number":["32460506"]}],"id":[{"id":"https:\/\/ror.org\/01h0zpd94","id-type":"ROR","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Plants"],"abstract":"<jats:p>Soilborne diseases caused by Rhizoctonia solani, Fusarium oxysporum f. sp. betae, Aphanomyces cochlioides, and Pythium spp. constrain sugar-beet production worldwide, with yield losses exceeding 50% in severely affected fields. These pathogens frequently co-occur, yet most biological control and microbiome studies address them individually, and recommendations from model crops often fail to translate to sugar beet\u2019s distinctive root biology and rotation systems. This critical review synthesises evidence on the rhizosphere microbiome as a plant protection resource, organising the literature by agronomic applicability: crop rotation, organic amendments, soil physicochemical management, microbial inoculants and synthetic communities, and microbiome-informed breeding and diagnostics. For each strategy, we state the evidence directness (direct sugar-beet field trials, greenhouse data, cross-crop extrapolation, or mechanistic inference) and evaluate the gap between experimental efficacy and field-ready recommendations. Direct field evidence remains limited: the best-characterised example is Rhizoctonia-suppressive soil linked to non-ribosomal peptide synthetase (NRPS)-producing Pseudomonadaceae and Burkholderiaceae, with 2,4-DAPG-producing Pseudomonas populations also being correlated with disease suppression in sugar-beet seedlings, plus one integrated fungicide-biocontrol field trial. We identify multi-pathogen challenge experiments, multi-site field validation of synthetic communities, and microbiome-informed breeding as priority research gaps. Rhizosphere microbiome management should be integrated into existing disease programmes rather than deployed as a stand-alone replacement.<\/jats:p>","DOI":"10.3390\/plants15182798","type":"journal-article","created":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T09:34:01Z","timestamp":1789378441000},"page":"2798","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["The Integrated Management of Sugar-Beet Soilborne Diseases Through Rhizosphere Microbiome Strategies: A Critical Review of Agronomic Evidence and Application Gaps"],"prefix":"10.3390","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0009-0004-8500-0436","authenticated-orcid":false,"given":"Yue","family":"Chang","sequence":"first","affiliation":[{"name":"Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenjin","family":"Chen","sequence":"additional","affiliation":[{"name":"Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Liang","family":"Wang","sequence":"additional","affiliation":[{"name":"Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1606-5875","authenticated-orcid":false,"given":"Ziqiang","family":"Zhang","sequence":"additional","affiliation":[{"name":"Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,9,12]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","unstructured":"Ra\u0161ovsk\u00fd, M., Pa\u010duta, V., Ducsay, L., and Lenick\u00e1, D. (2022). Quantity and Quality Changes in Sugar Beet (Beta vulgaris Provar. Altissima Doel) Induced by Different Sources of Biostimulants. Plants, 11.","DOI":"10.3390\/plants11172222"},{"key":"ref_2","first-page":"102343","article-title":"The Case of Sugar Beet in Europe: A Review of the Challenges for a Traditional Food Crop on the Verge of Climate Change and Circular Agriculture","volume":"24","author":"Nap","year":"2025","journal-title":"J. Agric. Food Res."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.1007\/s10529-021-03146-6","article-title":"Valorization of Sugar Beet Pulp Through Biotechnological Approaches: Recent Developments","volume":"43","author":"Puligundla","year":"2021","journal-title":"Biotechnol. Lett."},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"102456","DOI":"10.1016\/j.pmpp.2024.102456","article-title":"Sclerotium rolfsii-induced damping off and root rot in sugar beet: Understanding the biology, pathogenesis, and disease management strategies","volume":"134","author":"Farhaoui","year":"2024","journal-title":"Physiol. Mol. Plant Pathol."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1094\/PDIS-05-15-0574-FE","article-title":"Toward a reduced reliance on conventional pesticides in European agriculture","volume":"100","author":"Lamichhane","year":"2016","journal-title":"Plant Dis."},{"key":"ref_6","doi-asserted-by":"crossref","first-page":"1019","DOI":"10.1094\/PDIS-02-20-0336-RE","article-title":"Effects of Inoculum Density and Cultivar Susceptibility on Rhizoctonia Damping-Off and Crown and Root Rot in Sugar Beet","volume":"105","author":"Brantner","year":"2021","journal-title":"Plant Dis."},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"941","DOI":"10.1094\/PDIS-09-16-1221-RE","article-title":"Control of Rhizoctonia solani in sugar beet and effect of fungicide application and plant cultivar on inoculum potential in the soil","volume":"101","author":"Mittler","year":"2017","journal-title":"Plant Dis."},{"key":"ref_8","doi-asserted-by":"crossref","unstructured":"Lahlali, R., Ezrari, S., Radouane, N., Kenfaoui, J., Esmaeel, Q., El Hamss, H., Belabess, Z., and Barka, E.A. (2022). Biological Control of Plant Pathogens: A Global Perspective. Microorganisms, 10.","DOI":"10.3390\/microorganisms10030596"},{"key":"ref_9","doi-asserted-by":"crossref","first-page":"478","DOI":"10.1016\/j.tplants.2012.04.001","article-title":"The rhizosphere microbiome and plant health","volume":"17","author":"Berendsen","year":"2012","journal-title":"Trends Plant Sci."},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"1196","DOI":"10.1111\/nph.13312","article-title":"The importance of the microbiome of the plant holobiont","volume":"206","author":"Vandenkoornhuyse","year":"2015","journal-title":"New Phytol."},{"key":"ref_11","unstructured":"Baker, K.F., and Cook, R.J. (1974). Biological Control of Plant Pathogens, W. H. Freeman and Company."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"1097","DOI":"10.1126\/science.1203980","article-title":"Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria","volume":"332","author":"Mendes","year":"2011","journal-title":"Science"},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1007\/s11104-008-9568-6","article-title":"The rhizosphere: A playground and battlefield for soilborne pathogens and beneficial microorganisms","volume":"321","author":"Raaijmakers","year":"2009","journal-title":"Plant Soil"},{"key":"ref_14","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1146\/annurev-phyto-081211-172908","article-title":"Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria","volume":"50","author":"Raaijmakers","year":"2012","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"1284","DOI":"10.1094\/PHYTO-03-17-0111-RVW","article-title":"Disease suppressive soils: New insights from the soil microbiome","volume":"107","author":"Schlatter","year":"2017","journal-title":"Phytopathology"},{"key":"ref_16","doi-asserted-by":"crossref","unstructured":"Khorassani, R., Hettwer, U., Ratzinger, A., Steingrobe, B., Karlovsky, P., and Claassen, N. (2011). Citramalic Acid and Salicylic Acid in Sugar Beet Root Exudates Solubilize Soil Phosphorus. BMC Plant Biol., 11.","DOI":"10.1186\/1471-2229-11-121"},{"key":"ref_17","doi-asserted-by":"crossref","unstructured":"Liu, D., Xu, L., Wang, H., Xing, W., Song, B., and Wang, Q. (2024). Root Exudates Promoted Microbial Diversity in the Sugar Beet Rhizosphere for Organic Nitrogen Mineralization. Agriculture, 14.","DOI":"10.3390\/agriculture14071094"},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1007\/s00572-020-00978-4","article-title":"The arbuscular mycorrhizal mycelium from barley differentially influences various defense parameters in the non-host sugar beet under co-cultivation","volume":"30","author":"Hajiboland","year":"2020","journal-title":"Mycorrhiza"},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"1220","DOI":"10.1007\/s12355-024-01478-x","article-title":"Global Distribution, Identification, Pathogenesis, and Advanced Management Strategies for Sclerotium Root Rot in Sugar Beet","volume":"26","author":"Misra","year":"2024","journal-title":"Sugar Tech"},{"key":"ref_20","first-page":"238","article-title":"Rhizoctonia Crown and Root Rot in Sugar Beet: A Review on Biology, Epidemiology, and Sustainable Management","volume":"5","author":"Khan","year":"2025","journal-title":"S. Asian J. Agric. Sci."},{"key":"ref_21","doi-asserted-by":"crossref","unstructured":"The Angiosperm Phylogeny Group, Chase, M.W., Christenhusz, M.J.M., Fay, M.F., Byng, J.W., Judd, W.S., Soltis, D.E., Mabberley, D.J., Sennikov, A.N., and Soltis, P.S. (2016). An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot. J. Linn. Soc., 181, 1\u201320.","DOI":"10.1111\/boj.12385"},{"key":"ref_22","doi-asserted-by":"crossref","first-page":"718","DOI":"10.1094\/PDIS.2001.85.7.718","article-title":"Integrated control of Rhizoctonia crown and root rot of sugar beet with fungicides and antagonistic bacteria","volume":"85","author":"Kiewnick","year":"2001","journal-title":"Plant Dis."},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1111\/j.1574-6941.2010.00930.x","article-title":"Strain-specific colonization pattern of Rhizoctonia antagonists in the root system of sugar beet","volume":"74","author":"Zachow","year":"2010","journal-title":"FEMS Microbiol. Ecol."},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1126\/science.aaw9285","article-title":"Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome","volume":"366","author":"Cordovez","year":"2019","journal-title":"Science"},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"2936","DOI":"10.1038\/s41396-020-0720-5","article-title":"Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt","volume":"14","author":"Yuan","year":"2020","journal-title":"ISME J."},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1146\/annurev-phyto-080614-120357","article-title":"Soil health paradigms and implications for disease management","volume":"53","author":"Larkin","year":"2015","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.apsoil.2015.05.002","article-title":"Enhancement of soil suppressiveness against Rhizoctonia solani in sugar beet by organic amendments","volume":"94","author":"Postma","year":"2015","journal-title":"Appl. Soil Ecol."},{"key":"ref_28","doi-asserted-by":"crossref","unstructured":"Wolfgang, A., Zachow, C., M\u00fcller, H., Grand, A., Temme, N., Tilcher, R., and Berg, G. (2020). Understanding the impact of cultivar, seed origin, and substrate on bacterial diversity of the sugar beet rhizosphere and suppression of soil-borne pathogens. Front. Plant Sci., 11.","DOI":"10.3389\/fpls.2020.560869"},{"key":"ref_29","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1094\/PDIS-93-2-0155","article-title":"Integrated control of root and crown rot in sugar beet: Combined effects of cultivar, crop rotation, and soil tillage","volume":"93","author":"Buhre","year":"2009","journal-title":"Plant Dis."},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1080\/07060661.2011.558523","article-title":"Virulence, Distribution and Diversity of Rhizoctonia solani from Sugar Beet in Idaho and Oregon","volume":"33","author":"Strausbaugh","year":"2011","journal-title":"Can. J. Plant Pathol."},{"key":"ref_31","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1094\/PHYTO-100-7-0689","article-title":"Temperature, Moisture, and Fungicide Effects in Managing Rhizoctonia Root and Crown Rot of Sugar Beet","volume":"100","author":"Bolton","year":"2010","journal-title":"Phytopathology"},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"1039","DOI":"10.1094\/PDIS.1998.82.9.1039","article-title":"Characterization of Fusarium Root Rot Isolates from Sugar Beet by Growth and Virulence at Different Temperatures and Irrigation Regimes","volume":"82","author":"Harveson","year":"1998","journal-title":"Plant Dis."},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"163","DOI":"10.5274\/jsbr.41.4.163","article-title":"Fusarium species causing Fusarium yellows of sugarbeet","volume":"41","author":"Hanson","year":"2004","journal-title":"J. Sugar Beet Res."},{"key":"ref_34","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1080\/07060661.2015.1071283","article-title":"Temperature effects on the interactions of sugar beet with Fusarium yellows caused by Fusarium oxysporum f. sp. betae","volume":"37","author":"Webb","year":"2015","journal-title":"Can. J. Plant Pathol."},{"key":"ref_35","doi-asserted-by":"crossref","first-page":"9","DOI":"10.2298\/ZMSPN0610009J","article-title":"Root rot diseases of sugar beet","volume":"110","author":"Jacobsen","year":"2006","journal-title":"Zb. Matice Srp. Prir. Nauk."},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.fbr.2021.08.001","article-title":"Pathogenicity of animal and plant parasitic Aphanomyces spp. and their economic impact on aquaculture and agriculture","volume":"40","author":"Becking","year":"2022","journal-title":"Fungal Biol. Rev."},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1007\/BF01923445","article-title":"A potent attractant of zoospores of Aphanomyces cochlioides isolated from its host, Spinacia oleracea","volume":"48","author":"Horio","year":"1992","journal-title":"Experientia"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"1980","DOI":"10.1128\/EC.00091-08","article-title":"Cell Wall Chitosaccharides Are Essential Components and Exposed Patterns of the Phytopathogenic Oomycete Aphanomyces euteiches","volume":"7","author":"Badreddine","year":"2008","journal-title":"Eukaryot. Cell"},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1094\/PDIS.1998.82.8.896","article-title":"Variability in Sensitivity to Metalaxyl in vitro, Pathogenicity, and Control of Pythium spp. on Sugar Beet","volume":"82","author":"Brantner","year":"1998","journal-title":"Plant Dis."},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1094\/PDIS-09-19-1895-RE","article-title":"Evaluating inoculation methods to infect sugar beet with Fusarium oxysporum f. betae and F. secorum","volume":"104","author":"Lai","year":"2020","journal-title":"Plant Dis."},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1111\/j.1365-3059.2010.02394.x","article-title":"Genetic variability among isolates of Fusarium oxysporum from sugar beet","volume":"60","author":"Hill","year":"2011","journal-title":"Plant Pathol."},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"1654","DOI":"10.1111\/ppa.13082","article-title":"Phylogenetic relationships and virulence assays of Fusarium secorum from sugar beet suggest a new look at species designations","volume":"68","author":"Webb","year":"2019","journal-title":"Plant Pathol."},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"764","DOI":"10.1016\/j.funbio.2014.06.001","article-title":"Characterization of Fusarium secorum, a new species causing Fusarium yellowing decline of sugar beet in north central USA","volume":"118","author":"Secor","year":"2014","journal-title":"Fungal Biol."},{"key":"ref_44","doi-asserted-by":"crossref","unstructured":"Lamichhane, J.R., and Venturi, V. (2015). Synergisms between Microbial Pathogens in Plant Disease Complexes: A Growing Trend. Front. Plant Sci., 6.","DOI":"10.3389\/fpls.2015.00385"},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/s41579-020-0412-1","article-title":"Plant-microbiome interactions: From community assembly to plant health","volume":"18","author":"Trivedi","year":"2020","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"1385","DOI":"10.1016\/j.tibtech.2020.04.015","article-title":"Plant microbiome engineering: Expected benefits for improved crop growth and resilience","volume":"38","author":"Arif","year":"2020","journal-title":"Trends Biotechnol."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1146\/annurev.phyto.40.030402.110010","article-title":"Microbial populations responsible for specific soil suppressiveness to plant pathogens","volume":"40","author":"Weller","year":"2002","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1146\/annurev-phyto-021622-100127","article-title":"Plant-driven assembly of disease-suppressive soil microbiomes","volume":"62","author":"Spooren","year":"2024","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_49","doi-asserted-by":"crossref","unstructured":"Biessy, A., and Filion, M. (2021). Phloroglucinol derivatives in plant-beneficial Pseudomonas spp.: Biosynthesis, regulation, and functions. Metabolites, 11.","DOI":"10.3390\/metabo11030182"},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1055\/s-2006-924473","article-title":"Role of 2,4-Diacetylphloroglucinol-Producing Fluorescent Pseudomonas spp. in the Defense of Plant Roots","volume":"9","author":"Weller","year":"2007","journal-title":"Plant Biol."},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"125","DOI":"10.5423\/PPJ.SI.07.2012.0112","article-title":"Take-all of wheat and natural disease suppression: A review","volume":"29","author":"Kwak","year":"2013","journal-title":"Plant Pathol. J."},{"key":"ref_52","doi-asserted-by":"crossref","unstructured":"Van Der Voort, M., Meijer, H.J.G., Schmidt, Y., Watrous, J., Dekkers, E., Mendes, R., Dorrestein, P.C., Gross, H., and Raaijmakers, J.M. (2015). Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Front. Microbiol., 6.","DOI":"10.3389\/fmicb.2015.00693"},{"key":"ref_53","doi-asserted-by":"crossref","unstructured":"M\u00fcller, M.S., Scheu, S., and Jousset, A. (2013). Protozoa drive the dynamics of culturable biocontrol bacterial communities. PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0066200"},{"key":"ref_54","doi-asserted-by":"crossref","first-page":"e02235","DOI":"10.1002\/ecs2.2235","article-title":"Crop rotational diversity increases disease suppressive capacity of soil microbiomes","volume":"9","author":"Peralta","year":"2018","journal-title":"Ecosphere"},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"8126","DOI":"10.1038\/s41467-023-43926-4","article-title":"Crop rotation and native microbiome inoculation restore soil capacity to suppress a root disease","volume":"14","author":"Zhou","year":"2023","journal-title":"Nat. Commun."},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1007\/s00248-007-9257-7","article-title":"Sugar beet-associated bacterial and fungal communities show a high indigenous antagonistic potential against plant pathogens","volume":"55","author":"Zachow","year":"2008","journal-title":"Microb. Ecol."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1016\/j.cropro.2009.12.002","article-title":"Maize genotype susceptibility to Rhizoctonia solani and its effect on sugar beet crop rotations","volume":"29","author":"Kluth","year":"2010","journal-title":"Crop Prot."},{"key":"ref_58","doi-asserted-by":"crossref","unstructured":"Huang, W., Sun, D., Fu, J., Zhao, H., Wang, R., and An, Y. (2020). Effects of continuous sugar beet cropping on rhizospheric microbial communities. Genes, 11.","DOI":"10.3390\/genes11010013"},{"key":"ref_59","doi-asserted-by":"crossref","unstructured":"Cui, R., Geng, G., Wang, G., Stevanato, P., Dong, Y., Li, T., Yu, L., and Wang, Y. (2022). The response of sugar beet rhizosphere micro-ecological environment to continuous cropping. Front. Microbiol., 13.","DOI":"10.3389\/fmicb.2022.956785"},{"key":"ref_60","doi-asserted-by":"crossref","unstructured":"Chen, Y., Du, J., Li, Y., Tang, H., Yin, Z., Yang, L., and Ding, X. (2022). Evolutions and Managements of Soil Microbial Community Structure Drove by Continuous Cropping. Front. Microbiol., 13.","DOI":"10.3389\/fmicb.2022.839494"},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"eaaw0759","DOI":"10.1126\/sciadv.aaw0759","article-title":"Initial soil microbiome composition and functioning predetermine future plant health","volume":"5","author":"Wei","year":"2019","journal-title":"Sci. Adv."},{"key":"ref_62","doi-asserted-by":"crossref","unstructured":"Huang, W., Sun, D., Wang, R., and An, Y. (2021). Integration of transcriptomics and metabolomics reveals the responses of sugar beet to continuous cropping obstacle. Front. Plant Sci., 12.","DOI":"10.3389\/fpls.2021.711333"},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1094\/PBIOMES-01-19-0008-R","article-title":"Disease Incidence in Sugar Beet Fields Is Correlated with Microbial Diversity and Distinct Biological Markers","volume":"3","author":"Kusstatscher","year":"2019","journal-title":"Phytobiomes J."},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1016\/j.soilbio.2009.10.012","article-title":"Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases","volume":"42","author":"Bonanomi","year":"2010","journal-title":"Soil Biol. Biochem."},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/aab.12555","article-title":"The Role of Organic Amendments to Soil for Crop Protection: Induction of Suppression of Soilborne Pathogens","volume":"176","author":"Vida","year":"2020","journal-title":"Ann. Appl. Biol."},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1146\/annurev-phyto-080615-100046","article-title":"Organic amendments, beneficial microbes, and soil microbiota: Toward a unified framework for disease suppression","volume":"56","author":"Bonanomi","year":"2018","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"100192","DOI":"10.1016\/j.rhisph.2020.100192","article-title":"Disease-suppressive compost enhances natural soil suppressiveness against soil-borne plant pathogens: A critical review","volume":"13","year":"2020","journal-title":"Rhizosphere"},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1186\/s40168-020-00892-z","article-title":"Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression","volume":"8","author":"Tao","year":"2020","journal-title":"Microbiome"},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"1558","DOI":"10.1111\/nph.18221","article-title":"Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities","volume":"235","author":"Deng","year":"2022","journal-title":"New Phytol."},{"key":"ref_70","doi-asserted-by":"crossref","first-page":"105268","DOI":"10.1016\/j.apsoil.2023.105268","article-title":"Soil-borne disease suppressiveness after short and long term application of fermented, composted or fresh organic amendment treatments in arable soils","volume":"195","author":"Postma","year":"2024","journal-title":"Appl. Soil Ecol."},{"key":"ref_71","doi-asserted-by":"crossref","unstructured":"Hanschen, F.S., and Winkelmann, T. (2020). Biofumigation for fighting replant disease\u2014A review. Agronomy, 10.","DOI":"10.3390\/agronomy10030425"},{"key":"ref_72","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1094\/PHYTO-09-14-0247-R","article-title":"Brassica seed meal soil amendments transform the rhizosphere microbiome and improve apple production through resistance to pathogen reinfestation","volume":"105","author":"Mazzola","year":"2015","journal-title":"Phytopathology"},{"key":"ref_73","doi-asserted-by":"crossref","first-page":"5111","DOI":"10.1128\/AEM.00335-09","article-title":"Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the Continental Scale","volume":"75","author":"Lauber","year":"2009","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1038\/nrmicro.2017.87","article-title":"Embracing the unknown: Disentangling the complexities of the soil microbiome","volume":"15","author":"Fierer","year":"2017","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_75","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1016\/j.soilbio.2010.10.017","article-title":"Variations in soil characteristics affecting the occurrence of Aphanomyces root rot of sugar beet\u2014Risk evaluation and disease control","volume":"43","author":"Olsson","year":"2011","journal-title":"Soil Biol. Biochem."},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"1208","DOI":"10.1016\/j.geoderma.2018.11.020","article-title":"Influence of soil characteristics on yield response to lime in sugar beet","volume":"337","author":"Olsson","year":"2019","journal-title":"Geoderma"},{"key":"ref_77","first-page":"192","article-title":"Addition of supplemental spent lime to previously limed soils for control of Aphanomyces root rot on sugarbeet","volume":"47","author":"Brantner","year":"2016","journal-title":"Sugarbeet Res. Ext. Rep."},{"key":"ref_78","doi-asserted-by":"crossref","first-page":"5090","DOI":"10.1038\/s41467-023-40810-z","article-title":"Acidification suppresses the natural capacity of soil microbiome to fight pathogenic Fusarium infections","volume":"14","author":"Li","year":"2023","journal-title":"Nat. Commun."},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"e02333-21","DOI":"10.1128\/spectrum.02333-21","article-title":"Alleviating soil acidification could increase disease suppression of bacterial wilt by recruiting potentially beneficial rhizobacteria","volume":"10","author":"Zhang","year":"2022","journal-title":"Microbiol. Spectr."},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1146\/annurev.phyto.42.012604.135455","article-title":"Microbial diversity in soil: Selection of microbial populations by plant and soil type and implications for disease suppressiveness","volume":"42","author":"Garbeva","year":"2004","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_81","doi-asserted-by":"crossref","unstructured":"Roman, D.L., Voiculescu, D.I., Filip, M., Ostafe, V., and Isvoran, A. (2021). Effects of Triazole Fungicides on Soil Microbiota and on the Activities of Enzymes Found in Soil: A Review. Agriculture, 11.","DOI":"10.3390\/agriculture11090893"},{"key":"ref_82","doi-asserted-by":"crossref","first-page":"2176","DOI":"10.1016\/j.soilbio.2011.07.001","article-title":"Tebuconazole Application Decreases Soil Microbial Biomass and Activity","volume":"43","author":"Antiguedad","year":"2011","journal-title":"Soil Biol. Biochem."},{"key":"ref_83","doi-asserted-by":"crossref","first-page":"103343","DOI":"10.1016\/j.apsoil.2019.08.005","article-title":"Fungicide azoxystrobin induced changes on the soil microbiome","volume":"145","author":"Wang","year":"2020","journal-title":"Appl. Soil Ecol."},{"key":"ref_84","doi-asserted-by":"crossref","first-page":"1177","DOI":"10.1038\/ismej.2014.210","article-title":"Distinct soil microbial diversity under long-term organic and conventional farming","volume":"9","author":"Hartmann","year":"2015","journal-title":"ISME J."},{"key":"ref_85","doi-asserted-by":"crossref","first-page":"1103","DOI":"10.1111\/1365-2435.13039","article-title":"Deciphering the Associations between Soil Microbial Diversity and Ecosystem Multifunctionality Driven by Long-Term Fertilization Management","volume":"32","author":"Luo","year":"2018","journal-title":"Funct. Ecol."},{"key":"ref_86","doi-asserted-by":"crossref","first-page":"1272","DOI":"10.1094\/PHYTO.2004.94.11.1272","article-title":"The role of Bacillus-based biological control agents in integrated pest management systems: Plant diseases","volume":"94","author":"Jacobsen","year":"2004","journal-title":"Phytopathology"},{"key":"ref_87","doi-asserted-by":"crossref","unstructured":"Fan, B., Wang, C., Song, X., Ding, X., Wu, L., Wu, H., Gao, X., and Borriss, R. (2018). Bacillus velezensis FZB42 in 2018: The gram-positive model strain for plant growth promotion and biocontrol. Front. Microbiol., 9.","DOI":"10.3389\/fmicb.2018.02491"},{"key":"ref_88","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1016\/j.jbiotec.2018.07.044","article-title":"Biological control of plant pathogens by Bacillus species","volume":"285","author":"Fira","year":"2018","journal-title":"J. Biotechnol."},{"key":"ref_89","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1111\/1751-7915.12238","article-title":"Lipopeptides as main ingredients for inhibition of fungal phytopathogens by Bacillus subtilis\/amyloliquefaciens","volume":"8","author":"Cawoy","year":"2015","journal-title":"Microb. Biotechnol."},{"key":"ref_90","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1094\/PHYTO-97-2-0239","article-title":"Induced systemic resistance by fluorescent Pseudomonas spp.","volume":"97","author":"Bakker","year":"2007","journal-title":"Phytopathology"},{"key":"ref_91","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1080\/07060661.2024.2425955","article-title":"Biochemistry and differential mechanistic activity of antimicrobial lipopeptides from plant pathogen antagonists from the genus Bacillus","volume":"47","author":"Bakker","year":"2025","journal-title":"Can. J. Plant Pathol."},{"key":"ref_92","doi-asserted-by":"crossref","first-page":"105100","DOI":"10.1016\/j.biocontrol.2022.105100","article-title":"Combined use of Trichoderma and beneficial bacteria (mainly Bacillus and Pseudomonas): Development of microbial synergistic bio-inoculants in sustainable agriculture","volume":"176","author":"Poveda","year":"2022","journal-title":"Biol. Control"},{"key":"ref_93","doi-asserted-by":"crossref","unstructured":"Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moenne-Loccoz, Y., and Muller, D. (2017). Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Front. Microbiol., 8.","DOI":"10.3389\/fmicb.2017.01218"},{"key":"ref_94","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1046\/j.1469-8137.2003.00686.x","article-title":"Phenazines and their role in biocontrol by Pseudomonas bacteria","volume":"157","author":"Bloemberg","year":"2003","journal-title":"New Phytol."},{"key":"ref_95","doi-asserted-by":"crossref","first-page":"3905","DOI":"10.1111\/1462-2920.14395","article-title":"Phenazines in plant-beneficial Pseudomonas spp.: Biosynthesis, regulation, function and genomics","volume":"20","author":"Biessy","year":"2018","journal-title":"Environ. Microbiol."},{"key":"ref_96","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1002\/j.1460-2075.1989.tb03384.x","article-title":"Cyanide production by Pseudomonas fluorescens helps suppress black root rot of tobacco under gnotobiotic conditions","volume":"8","author":"Voisard","year":"1989","journal-title":"EMBO J."},{"key":"ref_97","doi-asserted-by":"crossref","unstructured":"Ossowicki, A., Jafra, S., and Garbeva, P. (2017). The antimicrobial volatile power of the rhizospheric isolate Pseudomonas donghuensis P482. PLoS ONE, 12.","DOI":"10.1371\/journal.pone.0174362"},{"key":"ref_98","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1038\/nrmicro797","article-title":"Trichoderma species\u2014opportunistic, avirulent plant symbionts","volume":"2","author":"Harman","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_99","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1038\/nrmicro2637","article-title":"Trichoderma: The genomics of opportunistic success","volume":"9","author":"Druzhinina","year":"2011","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_100","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1146\/annurev-phyto-073009-114450","article-title":"Induced systemic resistance and plant responses to fungal biocontrol agents","volume":"48","author":"Shoresh","year":"2010","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_101","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.soilbio.2007.07.002","article-title":"Trichoderma-plant-pathogen interactions","volume":"40","author":"Vinale","year":"2008","journal-title":"Soil Biol. Biochem."},{"key":"ref_102","doi-asserted-by":"crossref","first-page":"1571","DOI":"10.1105\/tpc.10.9.1571","article-title":"A novel signaling pathway controlling induced systemic resistance in Arabidopsis","volume":"10","author":"Pieterse","year":"1998","journal-title":"Plant Cell"},{"key":"ref_103","doi-asserted-by":"crossref","unstructured":"Vurukonda, S.S.K.P., Giovanardi, D., and Stefani, E. (2018). Plant growth promoting and biocontrol activity of Streptomyces spp. as endophytes. Int. J. Mol. Sci., 19.","DOI":"10.3390\/ijms19040952"},{"key":"ref_104","doi-asserted-by":"crossref","unstructured":"Newitt, J.T., Prudence, S.M.M., Hutchings, M.I., and Worsley, S.F. (2019). Biocontrol of Cereal Crop Diseases Using Streptomycetes. Pathogens, 8.","DOI":"10.3390\/pathogens8020078"},{"key":"ref_105","doi-asserted-by":"crossref","first-page":"101966","DOI":"10.1016\/j.pmpp.2023.101966","article-title":"Biological control of diseases caused by Rhizoctonia solani AG-2-2 in sugar beet (Beta vulgaris L.) using plant growth-promoting rhizobacteria (PGPR)","volume":"124","author":"Farhaoui","year":"2023","journal-title":"Physiol. Mol. Plant Pathol."},{"key":"ref_106","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1094\/PHYTO-05-25-0159-R","article-title":"Decoding rhizosphere synergies: Pseudomonas and Bacillus enhance microbiome-mediated suppression of Rhizoctonia solani in sugar beet","volume":"116","author":"Li","year":"2026","journal-title":"Phytopathology"},{"key":"ref_107","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.tibtech.2018.11.011","article-title":"The inherent conflicts in developing soil microbial inoculants","volume":"37","author":"Kaminsky","year":"2019","journal-title":"Trends Biotechnol."},{"key":"ref_108","doi-asserted-by":"crossref","unstructured":"Guti\u00e9rrez-Moreno, K., Olgu\u00edn-Mart\u00ednez, A.I., Montoya-Mart\u00ednez, A.C., and de los Santos-Villalobos, S. (2025). Trichoderma in Sustainable Agriculture and the Challenges Related to Its Effectiveness. Diversity, 17.","DOI":"10.3390\/d17100734"},{"key":"ref_109","doi-asserted-by":"crossref","first-page":"780","DOI":"10.1094\/PDIS-91-7-0780","article-title":"Fungicide registration and a small niche market: A case history of hymexazol seed treatment and the U.S. sugar beet industry","volume":"91","author":"Harveson","year":"2007","journal-title":"Plant Dis."},{"key":"ref_110","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1016\/j.chom.2017.07.004","article-title":"Establishing causality: Opportunities of synthetic communities for plant microbiome research","volume":"22","author":"Vorholt","year":"2017","journal-title":"Cell Host Microbe"},{"key":"ref_111","doi-asserted-by":"crossref","first-page":"1907","DOI":"10.1038\/s41396-022-01238-3","article-title":"Synthetic Bacterial Community Derived from a Desert Rhizosphere Confers Salt Stress Resilience to Tomato in the Presence of a Soil Microbiome","volume":"16","author":"Schmitz","year":"2022","journal-title":"ISME J."},{"key":"ref_112","doi-asserted-by":"crossref","first-page":"7890","DOI":"10.1038\/s41467-022-35452-6","article-title":"Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease","volume":"13","author":"Zhou","year":"2022","journal-title":"Nat. Commun."},{"key":"ref_113","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1186\/s40168-024-01814-z","article-title":"Synthetic community derived from grafted watermelon rhizosphere provides protection for ungrafted watermelon against Fusarium oxysporum via microbial synergistic effects","volume":"12","author":"Qiao","year":"2024","journal-title":"Microbiome"},{"key":"ref_114","doi-asserted-by":"crossref","first-page":"100164","DOI":"10.1016\/j.microb.2024.100164","article-title":"Assessing management strategies for mitigating Rhizoctonia damping-off in sugar beet cultivation","volume":"5","author":"Farhaoui","year":"2024","journal-title":"Microbe"},{"key":"ref_115","doi-asserted-by":"crossref","first-page":"7983","DOI":"10.1038\/s41467-023-43793-z","article-title":"Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning","volume":"14","author":"Emmenegger","year":"2023","journal-title":"Nat. Commun."},{"key":"ref_116","doi-asserted-by":"crossref","unstructured":"de Souza, R.S.C., Armanhi, J.S.L., and Arruda, P. (2020). From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency. Front. Plant Sci., 11.","DOI":"10.3389\/fpls.2020.01179"},{"key":"ref_117","doi-asserted-by":"crossref","first-page":"E2450","DOI":"10.1073\/pnas.1616148114","article-title":"Simplified and representative bacterial community of maize roots","volume":"114","author":"Niu","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_118","doi-asserted-by":"crossref","unstructured":"Yu, Y., Gui, Y., Li, Z., Jiang, C., Guo, J., and Niu, D. (2022). Induced systemic resistance for improving plant immunity by beneficial microbes. Plants, 11.","DOI":"10.3390\/plants11030386"},{"key":"ref_119","doi-asserted-by":"crossref","unstructured":"Pr\u0161i\u0107, J., and Ongena, M. (2020). Elicitors of plant immunity triggered by beneficial bacteria. Front. Plant Sci., 11.","DOI":"10.3389\/fpls.2020.594530"},{"key":"ref_120","doi-asserted-by":"crossref","first-page":"3563","DOI":"10.1128\/AEM.64.10.3563-3569.1998","article-title":"Secondary metabolite- and endochitinase-dependent antagonism toward plant-pathogenic microfungi of Pseudomonas fluorescens isolates from sugar beet rhizosphere","volume":"64","author":"Nielsen","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_121","doi-asserted-by":"crossref","first-page":"2765","DOI":"10.1038\/s41564-024-01827-2","article-title":"A cross-systems primer for synthetic microbial communities","volume":"9","author":"Mehlferber","year":"2024","journal-title":"Nat. Microbiol."},{"key":"ref_122","unstructured":"Ministry of Agriculture and Rural Affairs of the People\u2019s Republic of China (2026, August 19). Measures for the Administration of Pesticide Registration, Amended by Ministry of Agriculture and Rural Affairs Order No. 3 of 2025, Available online: https:\/\/fgs.moa.gov.cn\/flfg\/202508\/t20250801_6476248.htm."},{"key":"ref_123","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1038\/s41396-021-01088-5","article-title":"Solutions in microbiome engineering: Prioritizing barriers to organism establishment","volume":"16","author":"Albright","year":"2022","journal-title":"ISME J."},{"key":"ref_124","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1038\/s41477-020-00830-9","article-title":"Emerging strategies for precision microbiome management in diverse agroecosystems","volume":"7","author":"French","year":"2021","journal-title":"Nat. Plants"},{"key":"ref_125","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1016\/j.molp.2023.03.009","article-title":"Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes","volume":"16","author":"Zhou","year":"2023","journal-title":"Mol. Plant"},{"key":"ref_126","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1186\/s40793-024-00638-6","article-title":"The role of the rhizobiome recruited by root exudates in plant disease resistance: Current status and future directions","volume":"19","author":"Feng","year":"2024","journal-title":"Environ. Microbiome"},{"key":"ref_127","doi-asserted-by":"crossref","first-page":"5125","DOI":"10.1038\/s41467-024-49218-9","article-title":"Fusaric acid mediates the assembly of disease-suppressive rhizosphere microbiota via induced shifts in plant root exudates","volume":"15","author":"Jin","year":"2024","journal-title":"Nat. Commun."},{"key":"ref_128","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1038\/s41579-018-0029-9","article-title":"Best practices for analysing microbiomes","volume":"16","author":"Knight","year":"2018","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_129","doi-asserted-by":"crossref","first-page":"2769","DOI":"10.1111\/mec.16460","article-title":"Best Practices in Metabarcoding of Fungi: From Experimental Design to Results","volume":"31","author":"Tedersoo","year":"2022","journal-title":"Mol. Ecol."},{"key":"ref_130","doi-asserted-by":"crossref","first-page":"833","DOI":"10.1038\/nbt.3935","article-title":"Shotgun metagenomics, from sampling to analysis","volume":"35","author":"Quince","year":"2017","journal-title":"Nat. Biotechnol."},{"key":"ref_131","doi-asserted-by":"crossref","unstructured":"Mhlongo, M.I., Piater, L.A., Madala, N.E., Labuschagne, N., and Dubery, I.A. (2018). The Chemistry of Plant-Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance. Front. Plant Sci., 9.","DOI":"10.3389\/fpls.2018.00112"},{"key":"ref_132","doi-asserted-by":"crossref","first-page":"W388","DOI":"10.1093\/nar\/gkab382","article-title":"MetaboAnalyst 5.0: Narrowing the gap between raw spectra and functional insights","volume":"49","author":"Pang","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"ref_133","doi-asserted-by":"crossref","first-page":"105532","DOI":"10.1016\/j.apsoil.2024.105532","article-title":"Deep learning meta-analysis for predicting plant soil-borne fungal disease occurrence from soil microbiome data","volume":"202","author":"Wang","year":"2024","journal-title":"Appl. Soil Ecol."},{"key":"ref_134","doi-asserted-by":"crossref","first-page":"e00260-23","DOI":"10.1128\/aem.00260-23","article-title":"Reference-free plant disease detection using machine learning and long-read metagenomic sequencing","volume":"89","author":"Johnson","year":"2023","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_135","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1038\/s43705-022-00182-9","article-title":"Machine Learning and Deep Learning Applications in Microbiome Research","volume":"2","author":"Kutuzova","year":"2022","journal-title":"ISME Commun."},{"key":"ref_136","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1186\/s40168-019-0728-0","article-title":"Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets","volume":"7","author":"Kusstatscher","year":"2019","journal-title":"Microbiome"},{"key":"ref_137","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1007\/s10658-016-0862-5","article-title":"Disease risk assessment of sugar beet root rot using quantitative real-time PCR analysis of Aphanomyces cochlioides in naturally infested soil samples","volume":"145","author":"Almquist","year":"2016","journal-title":"Eur. J. Plant Pathol."},{"key":"ref_138","first-page":"353","article-title":"Real-time PCR (qPCR) assay for Rhizoctonia solani anastomoses group AG2-2 IIIB","volume":"46","author":"Abbas","year":"2014","journal-title":"Pak. J. Bot."},{"key":"ref_139","doi-asserted-by":"crossref","unstructured":"Ravi, S., Hassani, M., Heidari, B., Deb, S., Orsini, E., Li, J., Richards, C.M., Panella, L.W., Srinivasan, S., and Campagna, G. (2022). Development of an SNP assay for marker-assisted selection of soil-borne Rhizoctonia solani AG-2-2-IIIB resistance in sugar beet. Biology, 11.","DOI":"10.3390\/biology11010049"},{"key":"ref_140","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1016\/j.tplants.2025.04.004","article-title":"Exploitation of rhizosphere microbiome biodiversity in plant breeding","volume":"30","author":"Dwivedi","year":"2025","journal-title":"Trends Plant Sci."},{"key":"ref_141","doi-asserted-by":"crossref","first-page":"102268","DOI":"10.1016\/j.mib.2023.102268","article-title":"Host genetics regulate the plant microbiome","volume":"72","author":"Zhang","year":"2023","journal-title":"Curr. Opin. Microbiol."},{"key":"ref_142","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1146\/annurev-phyto-021621-121447","article-title":"Engineering the crop microbiota through host genetics","volume":"61","author":"Bulgarelli","year":"2023","journal-title":"Annu. Rev. Phytopathol."},{"key":"ref_143","doi-asserted-by":"crossref","first-page":"koaf185","DOI":"10.1093\/plcell\/koaf185","article-title":"Potential and challenges for application of microbiomes in agriculture","volume":"37","author":"Copeland","year":"2025","journal-title":"Plant Cell"},{"key":"ref_144","doi-asserted-by":"crossref","first-page":"1437","DOI":"10.1007\/s42729-021-00451-x","article-title":"Disease-suppressive soils-Beyond food production: A critical review","volume":"21","author":"Jayaraman","year":"2021","journal-title":"J. Soil Sci. Plant Nutr."},{"key":"ref_145","doi-asserted-by":"crossref","first-page":"640","DOI":"10.1038\/s41579-023-00900-7","article-title":"Climate Change Impacts on Plant Pathogens, Food Security and Paths Forward","volume":"21","author":"Singh","year":"2023","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_146","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1016\/j.jare.2019.03.004","article-title":"A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application","volume":"19","author":"Compant","year":"2019","journal-title":"J. Adv. Res."}],"container-title":["Plants"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2223-7747\/15\/18\/2798\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T10:03:02Z","timestamp":1789380182000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2223-7747\/15\/18\/2798"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,12]]},"references-count":146,"journal-issue":{"issue":"18","published-online":{"date-parts":[[2026,9]]}},"alternative-id":["plants15182798"],"URL":"https:\/\/doi.org\/10.3390\/plants15182798","relation":{},"ISSN":["2223-7747"],"issn-type":[{"value":"2223-7747","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,12]]}}}