{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,25]],"date-time":"2026-08-25T05:18:30Z","timestamp":1787635110514,"version":"build-2736575974"},"reference-count":130,"publisher":"MDPI AG","issue":"3","license":[{"start":{"date-parts":[[2026,8,21]],"date-time":"2026-08-21T00:00:00Z","timestamp":1787270400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Proteomes"],"abstract":"<jats:p>Background: Seed dormancy is crucial for plant survival and agricultural productivity, yet its molecular mechanisms, particularly the role of maternal effects, remain poorly understood. Methods: In this study, we applied a SWATH-based, label-free, quantitative shotgun proteomic mass spectrometry approach to investigate the temporal dynamics of dormancy establishment in Xanthium strumarium, a wild plant with two seeds in one burr that, despite sharing the same genetic and environmental conditions, exhibit distinct dormancy states. Results: Our data show that dormant seeds undergo coordinated metabolic suppression, marked by a decrease in energy metabolism, cell cycle arrest, and auxin signaling, explaining their smaller size. Simultaneously, dormant seeds exhibit metabolic re-prioritization towards fatty acid desaturation, cell wall modification, and an active epigenetic program stabilized by dormancy-promoting factors alongside a transcriptionally quiescent state in early\u2013mid development. However, in the late developmental stage, molecular signaling pathways showed a recalibration distinguished by changes in seed metabolism (such as carbon\u2013nitrogen reallocation, sulfur assimilation, and GABA production), hormonal fluctuations, and epigenetic regulation. Notably, previously reported high DOG1 transcript abundance, together with the absence of detectable DOG1 protein in the proteomic dataset, suggests that post-transcriptional mechanisms may contribute to DOG1 regulation. Conclusions: Based on these findings and the available literature, we propose a framework whereby dormancy establishment occurs in two phases: an early DOG1-mediated priming phase followed by a temperature-sensitive plasticity phase during seed maturation.<\/jats:p>","DOI":"10.3390\/proteomes14030042","type":"journal-article","created":{"date-parts":[[2026,8,21]],"date-time":"2026-08-21T14:20:36Z","timestamp":1787322036000},"page":"42","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["DOG1-Mediated Priming Followed by Environmentally Tunable Plasticity: A Two-Phase Model for Dormancy Establishment in Xanthium strumarium"],"prefix":"10.3390","volume":"14","author":[{"given":"Iman","family":"Nemati","sequence":"first","affiliation":[{"name":"Department of Plant Production and Genetics Engineering, Faculty of Agriculture and Natural Resources, University of Mohaghegh Ardabili, Ardabil 56199-11367, Iran"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Somayeh","family":"Gholizadeh","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Tabriz, Tabriz 51666-16471, Iran"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2226-486X","authenticated-orcid":false,"given":"Dinakaran","family":"Elango","sequence":"additional","affiliation":[{"name":"Department of Agronomy, Iowa State University, Ames, IA 50011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sara","family":"Hamzelou","sequence":"additional","affiliation":[{"name":"School of Natural Sciences, Macquarie University, North Ryde, NSW 2109, Australia"},{"name":"Health and Biosecurity, Commonwealth Scientific and Industrial Research Organization (CSIRO), Adelaide, SA 5000, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5641-0709","authenticated-orcid":false,"given":"Karthik Shantharam","family":"Kamath","sequence":"additional","affiliation":[{"name":"School of Natural Sciences, Macquarie University, North Ryde, NSW 2109, Australia"},{"name":"Australian Proteome Analysis Facility, Macquarie University, North Ryde, NSW 2109, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5969-1860","authenticated-orcid":false,"given":"Mohammad","family":"Sedghi","sequence":"additional","affiliation":[{"name":"Department of Plant Production and Genetics Engineering, Faculty of Agriculture and Natural Resources, University of Mohaghegh Ardabili, Ardabil 56199-11367, Iran"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0073-8665","authenticated-orcid":false,"given":"Reza Tavakkol","family":"Afshari","sequence":"additional","affiliation":[{"name":"Department of Agrotechnology, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad 91779-48974, Iran"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1472-8249","authenticated-orcid":false,"given":"Paul A.","family":"Haynes","sequence":"additional","affiliation":[{"name":"School of Natural Sciences, Macquarie University, North Ryde, NSW 2109, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2026,8,21]]},"reference":[{"key":"ref_1","first-page":"6142","article-title":"Histone Modifications Affecting Plant Dormancy and Dormancy Release: Common Regulatory Effects on Hormone Metabolism","volume":"75","author":"Sato","year":"2024","journal-title":"J. Exp. Bot."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"2035","DOI":"10.1111\/nph.16081","article-title":"Trait Analysis Reveals DOG1 Determines Initial Depth of Seed Dormancy, but Not Changes during Dormancy Cycling That Result in Seedling Emergence Timing","volume":"225","author":"Footitt","year":"2020","journal-title":"New Phytol."},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"960","DOI":"10.1016\/j.molp.2025.05.010","article-title":"Seed Dormancy and Germination in Rice: Molecular Regulatory Mechanisms and Breeding","volume":"18","author":"Xu","year":"2025","journal-title":"Mol. Plant"},{"key":"ref_4","doi-asserted-by":"crossref","first-page":"6159","DOI":"10.1093\/jxb\/erae236","article-title":"Regulation of Seed Dormancy by Histone Post-Translational Modifications in the Model Plant Arabidopsis thaliana","volume":"75","author":"Amaral","year":"2024","journal-title":"J. Exp. Bot."},{"key":"ref_5","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1111\/j.1469-8137.2011.03969.x","article-title":"A Novel Role for Histone Methyltransferase KYP\/SUVH4 in the Control of Arabidopsis Primary Seed Dormancy","volume":"193","author":"Zheng","year":"2012","journal-title":"New Phytol."},{"key":"ref_6","doi-asserted-by":"crossref","unstructured":"Liu, Y., Geyer, R., Van Zanten, M., Carles, A., Li, Y., Horold, A., van Nocker, S., and Soppe, W.J.J. (2011). Identification of the Arabidopsis REDUCED DORMANCY 2 Gene Uncovers a Role for the Polymerase Associated Factor 1 Complex in Seed Dormancy. PLoS ONE, 6.","DOI":"10.1371\/journal.pone.0022241"},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"100011","DOI":"10.1016\/j.xplc.2019.100011","article-title":"The Evening Complex and the Chromatin-Remodeling Factor PICKLE Coordinately Control Seed Dormancy by Directly Repressing DOG1 in Arabidopsis","volume":"1","author":"Zha","year":"2020","journal-title":"Plant Commun."},{"key":"ref_8","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1104\/pp.15.01483","article-title":"Seed Dormancy in Arabidopsis Is Controlled by Alternative Polyadenylation of DOG1","volume":"170","author":"Cyrek","year":"2016","journal-title":"Plant Physiol."},{"key":"ref_9","doi-asserted-by":"crossref","first-page":"E2199","DOI":"10.1073\/pnas.1600558113","article-title":"DELAY of GERMINATION1 (DOG1) Regulates Both Seed Dormancy and Flowering Time through MicroRNA Pathways","volume":"113","author":"Huo","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"1187","DOI":"10.1111\/j.1744-7909.2008.00727.x","article-title":"Abscisic Acid-mediated Epigenetic Processes in Plant Development and Stress Responses","volume":"50","author":"Chinnusamy","year":"2008","journal-title":"J. Integr. Plant Biol."},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"810","DOI":"10.1111\/tpj.12597","article-title":"WRKY41 Controls Arabidopsis Seed Dormancy via Direct Regulation of ABI3 Transcript Levels Not Downstream of ABA","volume":"79","author":"Ding","year":"2014","journal-title":"Plant J."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"1773","DOI":"10.1093\/pcp\/pcv084","article-title":"Loss of Arabidopsis thaliana Seed Dormancy Is Associated with Increased Accumulation of the GID1 GA Hormone Receptors","volume":"56","author":"Hauvermale","year":"2015","journal-title":"Plant Cell Physiol."},{"key":"ref_13","first-page":"2288","article-title":"Gibberellic Acid-Stimulated Arabidopsis6 Serves as an Integrator of Gibberellin, Abscisic Acid, and Glucose Signaling during Seed Germination in Arabidopsis","volume":"169","author":"Zhong","year":"2015","journal-title":"Plant Physiol."},{"key":"ref_14","doi-asserted-by":"crossref","unstructured":"Wang, X., Yesbergenova-Cuny, Z., Biniek, C., Bailly, C., El-Maarouf-Bouteau, H., and Corbineau, F. (2018). Revisiting the Role of Ethylene and N-End Rule Pathway on Chilling-Induced Dormancy Release in Arabidopsis Seeds. Int. J. Mol. Sci., 19.","DOI":"10.3390\/ijms19113577"},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"832","DOI":"10.1105\/tpc.18.00449","article-title":"ETR1\/RDO3 Regulates Seed Dormancy by Relieving the Inhibitory Effect of the ERF12-TPL Complex on DELAY OF GERMINATION1 Expression","volume":"31","author":"Li","year":"2019","journal-title":"Plant Cell"},{"key":"ref_16","doi-asserted-by":"crossref","unstructured":"Klupczy\u0144ska, E.A., and Paw\u0142owski, T.A. (2021). Regulation of Seed Dormancy and Germination Mechanisms in a Changing Environment. Int. J. Mol. Sci., 22.","DOI":"10.3390\/ijms22031357"},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"eadr8502","DOI":"10.1126\/sciadv.adr8502","article-title":"DOG1 Controls Dormancy Independently of ABA Core Signaling Kinases Regulation by Preventing AFP Dephosphorylation through AHG1","volume":"11","author":"Brandt","year":"2025","journal-title":"Sci. Adv."},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"2132","DOI":"10.1038\/s41467-018-04437-9","article-title":"Control of Seed Dormancy and Germination by DOG1-AHG1 PP2C Phosphatase Complex via Binding to Heme","volume":"9","author":"Nishimura","year":"2018","journal-title":"Nat. Commun."},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"7545","DOI":"10.1038\/s41467-025-62991-5","article-title":"Chromatin Retained MUSHER LncRNA Integrates ABA and DOG1 Signalling Pathways to Enhance Arabidopsis Seeds Dormancy","volume":"16","author":"Sacharowski","year":"2025","journal-title":"Nat. Commun."},{"key":"ref_20","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1111\/tpj.12735","article-title":"Seed Dormancy Cycling in Arabidopsis: Chromatin Remodelling and Regulation of DOG1 in Response to Seasonal Environmental Signals","volume":"81","author":"Kermode","year":"2015","journal-title":"Plant J."},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/j.envexpbot.2014.11.013","article-title":"DOG1-Imposed Dormancy Mediates Germination Responses to Temperature Cues","volume":"112","author":"Murphey","year":"2015","journal-title":"Environ. Exp. Bot."},{"key":"ref_22","doi-asserted-by":"crossref","first-page":"1737","DOI":"10.1111\/pce.12734","article-title":"Altitudinal and Climatic Associations of Seed Dormancy and Flowering Traits Evidence Adaptation of Annual Life Cycle Timing in Arabidopsis thaliana","volume":"39","author":"Vidigal","year":"2016","journal-title":"Plant Cell Environ."},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"e37434","DOI":"10.7554\/eLife.37434","article-title":"Non-Canonical RNA-Directed DNA Methylation Participates in Maternal and Environmental Control of Seed Dormancy","volume":"8","author":"Iwasaki","year":"2019","journal-title":"eLife"},{"key":"ref_24","doi-asserted-by":"crossref","first-page":"e2519319122","DOI":"10.1073\/pnas.2519319122","article-title":"Adaptation of Seed Dormancy to Maternal Climate Occurs via Intergenerational Transport of Abscisic Acid","volume":"122","author":"Chen","year":"2025","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"e14546","DOI":"10.1111\/ppl.14546","article-title":"Proteomic Analysis during Seed Development Provides Insight into the Early Establishment of Seed Dormancy in Xanthium strumarium","volume":"176","author":"Nemati","year":"2024","journal-title":"Physiol. Plant."},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1071\/FP21315","article-title":"DELAY OF GERMINATION 1 (DOG1) Regulates Dormancy in Dimorphic Seeds of Xanthium strumarium","volume":"49","author":"Nemati","year":"2022","journal-title":"Funct. Plant Biol."},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1614\/WS-06-184","article-title":"Light and Temperature Requirements for Common Cocklebur (Xanthium strumarium) Germination During After-Ripening Under Field Conditions","volume":"55","author":"Norsworthy","year":"2007","journal-title":"Weed Sci."},{"key":"ref_28","doi-asserted-by":"crossref","first-page":"6205","DOI":"10.3390\/cimb44120423","article-title":"DELAY OF GERMINATION 1, the Master Regulator of Seed Dormancy, Integrates the Regulatory Network of Phytohormones at the Transcriptional Level to Control Seed Dormancy","volume":"44","author":"Li","year":"2022","journal-title":"Curr. Issues Mol. Biol."},{"key":"ref_29","doi-asserted-by":"crossref","first-page":"1847","DOI":"10.1007\/s00018-019-03259-2","article-title":"Two of a Kind: Transmissible Schwann Cell Cancers in the Endangered Tasmanian Devil (Sarcophilus harrisii)","volume":"77","author":"Patchett","year":"2020","journal-title":"Cell. Mol. Life Sci."},{"key":"ref_30","doi-asserted-by":"crossref","first-page":"btad526","DOI":"10.1093\/bioinformatics\/btad526","article-title":"DEP2: An Upgraded Comprehensive Analysis Toolkit for Quantitative Proteomics Data","volume":"39","author":"Feng","year":"2023","journal-title":"Bioinformatics"},{"key":"ref_31","first-page":"822","article-title":"Package \u2018MASS\u2019","volume":"538","author":"Ripley","year":"2013","journal-title":"Cran R"},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"D362","DOI":"10.1093\/nar\/gkw937","article-title":"The STRING Database in 2017: Quality-Controlled Protein-Protein Association Networks, Made Broadly Accessible","volume":"45","author":"Szklarczyk","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"2347","DOI":"10.1093\/bioinformatics\/btq430","article-title":"Cytoscape Web: An Interactive Web-Based Network Browser","volume":"26","author":"Lopes","year":"2010","journal-title":"Bioinformatics"},{"key":"ref_34","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1038\/s41596-018-0103-9","article-title":"Pathway Enrichment Analysis and Visualization of Omics Data Using G: Profiler, GSEA, Cytoscape and EnrichmentMap","volume":"14","author":"Reimand","year":"2019","journal-title":"Nat. Protoc."},{"key":"ref_35","first-page":"160","article-title":"Ggplot2: Elegant Graphics for Data Analysis (2nd Ed.)","volume":"17","author":"Villanueva","year":"2019","journal-title":"Measurement"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"2912","DOI":"10.1093\/bioinformatics\/btv300","article-title":"GOplot: An R Package for Visually Combining Expression Data with Functional Analysis","volume":"31","author":"Walter","year":"2015","journal-title":"Bioinformatics"},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"2811","DOI":"10.1093\/bioinformatics\/btu393","article-title":"Circlize Implements and Enhances Circular Visualization in R","volume":"30","author":"Gu","year":"2014","journal-title":"Bioinformatics"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"e14130","DOI":"10.1111\/ppl.14130","article-title":"Identification of Transcriptional Modules Linked to the Drought Response of Brassica napus during Seed Development and Their Mitigation by Early Biotic Stress","volume":"176","author":"Bianchetti","year":"2024","journal-title":"Physiol. Plant."},{"key":"ref_39","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1007\/s00442-016-3576-7","article-title":"Seed Heteromorphism in Triticum dicoccoides: Association between Seed Positions within a Dispersal Unit and Dormancy","volume":"181","author":"Volis","year":"2016","journal-title":"Oecologia"},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"100732","DOI":"10.1016\/j.xplc.2023.100732","article-title":"Dormancy Heterogeneity among Arabidopsis thaliana Seeds Is Linked to Individual Seed Size","volume":"5","author":"Krzyszton","year":"2024","journal-title":"Plant Commun."},{"key":"ref_41","doi-asserted-by":"crossref","first-page":"1563","DOI":"10.1016\/j.molp.2015.09.005","article-title":"Amino Acid Catabolism in Plants","volume":"8","author":"Hildebrandt","year":"2015","journal-title":"Mol. Plant"},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"uhae283","DOI":"10.1093\/hr\/uhae283","article-title":"A Vacuolar Invertase Gene SlVI Modulates Sugar Metabolism and Postharvest Fruit Quality and Stress Resistance in Tomato","volume":"12","author":"Wu","year":"2025","journal-title":"Hortic. Res."},{"key":"ref_43","doi-asserted-by":"crossref","unstructured":"Jiang, Z., Wang, M., Nicolas, M., Og\u00e9, L., P\u00e9rez-Garcia, M.D., Crespel, L., Li, G., Ding, Y., Le Gourrierec, J., and Grappin, P. (2022). Glucose-6-Phosphate Dehydrogenases: The Hidden Players of Plant Physiology. Int. J. Mol. Sci., 23.","DOI":"10.3390\/ijms232416128"},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"4946","DOI":"10.1016\/j.cub.2021.09.019","article-title":"Auxin-Dependent Control of Cytoskeleton and Cell Shape Regulates Division Orientation in the Arabidopsis Embryo","volume":"31","author":"Vaddepalli","year":"2021","journal-title":"Curr. Biol."},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1104\/pp.114.255604","article-title":"Highly Methyl Esterified Seeds Is a Pectin Methyl Esterase Involved in Embryo Development","volume":"167","author":"Mansfield","year":"2015","journal-title":"Plant Physiol."},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"e202345006","DOI":"10.1590\/2317-1545v45268562","article-title":"Importance of the Lignin Content in the Pod Wall and Seed Coat on Soybean Seed Physiological and Health Performances","volume":"45","author":"Krzyzanowski","year":"2023","journal-title":"J. Seed Sci."},{"key":"ref_47","doi-asserted-by":"crossref","unstructured":"Hradilov\u00e1, I., Trn\u011bn\u00fd, O., V\u00e1lkov\u00e1, M., Cechov\u00e1, M., Jansk\u00e1, A., Proke\u0161ov\u00e1, L., Aamir, K., Krezdorn, N., Rotter, B., and Winter, P. (2017). A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Front. Plant Sci., 8.","DOI":"10.3389\/fpls.2017.00542"},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"139913","DOI":"10.1016\/j.ijbiomac.2025.139913","article-title":"Shading Stress Promotes Lignin Biosynthesis in Soybean Seed Coat and Consequently Extends Seed Longevity","volume":"298","author":"Deng","year":"2025","journal-title":"Int. J. Biol. Macromol."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"E3571","DOI":"10.1073\/pnas.1403851111","article-title":"Delay of Germination 1 Mediates a Conserved Coat-Dormancy Mechanism for the Temperature- and Gibberellin-Dependent Control of Seed Germination","volume":"111","author":"Graeber","year":"2014","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"2997","DOI":"10.1093\/plphys\/kiae231","article-title":"Transcription Factor DIVARICATA1 Positively Modulates Seed Germination in Response to Salinity Stress","volume":"195","author":"Zhang","year":"2024","journal-title":"Plant Physiol."},{"key":"ref_51","doi-asserted-by":"crossref","unstructured":"Shao, Q., Liu, X., Su, T., Ma, C., and Wang, P. (2019). New Insights Into the Role of Seed Oil Body Proteins in Metabolism and Plant Development. Front. Plant Sci., 10.","DOI":"10.3389\/fpls.2019.01568"},{"key":"ref_52","first-page":"827","article-title":"Late Seed Maturation: Drying without Dying","volume":"68","author":"Leprince","year":"2017","journal-title":"J. Exp. Bot."},{"key":"ref_53","doi-asserted-by":"crossref","first-page":"209","DOI":"10.15258\/sst.2020.48.2.08","article-title":"Total Lipid and Fatty Acid Profiles of Coffea arabica Endosperm and Embryo Tissues and Their Relationship to Seed Desiccation Sensitivity","volume":"48","author":"Malta","year":"2020","journal-title":"Seed Sci. Technol."},{"key":"ref_54","first-page":"1303","article-title":"Jasmonates: Biosynthesis, Metabolism, and Signaling by Proteins Activating and Repressing Transcription","volume":"68","author":"Wasternack","year":"2017","journal-title":"J. Exp. Bot."},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"3846","DOI":"10.1105\/tpc.19.00838","article-title":"Molecular Mechanism Underlying the Synergetic Effect of Jasmonate on Abscisic Acid Signaling during Seed Germination in Arabidopsis","volume":"32","author":"Pan","year":"2020","journal-title":"Plant Cell"},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"147671","DOI":"10.1016\/j.gene.2023.147671","article-title":"Lipid Transfer Protein, OsLTPL18, Is Essential for Grain Weight and Seed Germination in Rice","volume":"883","author":"Li","year":"2023","journal-title":"Gene"},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1016\/j.plantsci.2015.07.016","article-title":"A Lipid Transfer Protein, OsLTPL36, Is Essential for Seed Development and Seed Quality in Rice","volume":"239","author":"Wang","year":"2015","journal-title":"Plant Sci."},{"key":"ref_58","doi-asserted-by":"crossref","unstructured":"Li, Q., Zhai, W., Wei, J., and Jia, Y. (2023). Rice Lipid Transfer Protein, OsLTPL23, Controls Seed Germination by Regulating Starch-Sugar Conversion and ABA Homeostasis. Front. Genet., 14.","DOI":"10.3389\/fgene.2023.1111318"},{"key":"ref_59","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1007\/s40502-022-00695-4","article-title":"Green Seed Photosynthesis: What Is It? What Do We Know about It? Where to Go?","volume":"27","author":"Shackira","year":"2022","journal-title":"Plant Physiol. Rep."},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1111\/nph.13044","article-title":"Adjustments of Embryonic Photosynthetic Activity Modulate Seed Fitness in Arabidopsis thaliana","volume":"205","author":"Allorent","year":"2015","journal-title":"New Phytol."},{"key":"ref_61","doi-asserted-by":"crossref","unstructured":"Galili, G., Avin-wittenberg, T., Angelovici, R., and Fernie, A.R. (2014). The Role of Photosynthesis and Amino Acid Metabolism in the Energy Status during Seed Development. Front. Plant Sci., 5.","DOI":"10.3389\/fpls.2014.00447"},{"key":"ref_62","doi-asserted-by":"crossref","unstructured":"Han, M., Zhang, C., Suglo, P., Sun, S., Wang, M., and Su, T. (2021). L-Aspartate: An Essential Metabolite for Plant Growth and Stress Acclimation. Molecules, 26.","DOI":"10.3390\/molecules26071887"},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"4944","DOI":"10.1038\/s41467-021-25238-7","article-title":"Excessive Ammonium Assimilation by Plastidic Glutamine Synthetase Causes Ammonium Toxicity in Arabidopsis thaliana","volume":"12","author":"Hachiya","year":"2021","journal-title":"Nat. Commun."},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"koaf046","DOI":"10.1093\/plcell\/koaf046","article-title":"Nitrate Attenuates Abscisic Acid Signaling via NIN-LIKE PROTEIN8 in Arabidopsis Seed Germination","volume":"37","author":"Huang","year":"2025","journal-title":"Plant Cell"},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"1001","DOI":"10.1111\/j.1469-8137.2010.03440.x","article-title":"Deficiency in Plastidic Glutamine Synthetase Alters Proline Metabolism and Transcriptomic Response in Lotus japonicus under Drought Stress","volume":"188","author":"Betti","year":"2010","journal-title":"New Phytol."},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"608","DOI":"10.1016\/j.plaphy.2020.04.013","article-title":"Towards Identification of Molecular Mechanism in Which the Overexpression of Wheat Cytosolic and Plastid Glutamine Synthetases in Tobacco Enhanced Drought Tolerance","volume":"151","author":"Yu","year":"2020","journal-title":"Plant Physiol. Biochem."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1093\/pcp\/pcv184","article-title":"Asparagine Metabolic Pathways in Arabidopsis","volume":"57","author":"Gaufichon","year":"2016","journal-title":"Plant Cell Physiol."},{"key":"ref_68","first-page":"786","article-title":"Characterization of Genes Involved in \u03b3-Aminobutyric Acid Metabolic Pathways Response to Metabolites Accumulation in Embryos during Barley Germination","volume":"25","author":"Jin","year":"2021","journal-title":"Int. J. Agric. Biol."},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1016\/j.molp.2022.12.001","article-title":"Improving Maize Seed Protein Content and Nitrogen-Use Efficiency by a Teosinte Asparagine Synthetase","volume":"16","author":"Liu","year":"2023","journal-title":"Mol. Plant"},{"key":"ref_70","doi-asserted-by":"crossref","first-page":"2443","DOI":"10.1111\/pce.13845","article-title":"Role of TaALMT1 Malate-GABA Transporter in Alkaline PH Tolerance of Wheat","volume":"43","author":"Kamran","year":"2020","journal-title":"Plant Cell Environ."},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"FP24216","DOI":"10.1071\/FP24216","article-title":"The Relationship between GABA Content and Desiccation Tolerance at Five Developmental Stages of Wheat (Triticum durum) Seeds","volume":"52","author":"Samarah","year":"2025","journal-title":"Funct. Plant Biol."},{"key":"ref_72","first-page":"619","article-title":"GABA Enhances Thermotolerance of Seeds Germination by Attenuating the ROS Damage in Arabidopsis","volume":"89","author":"Zhang","year":"2020","journal-title":"Phyton-Int. J. Exp. Bot."},{"key":"ref_73","doi-asserted-by":"crossref","unstructured":"Wang, X., Zong, N., Wang, X., Niu, J., Zhang, X., Shu, K., Wang, G., and Hui, W. (2025). Gamma-Aminobutyric Acid (GABA) Releases Seed Dormancy by Orchestrating Abscisic Acid and Gibberellin Metabolism and Signaling. BMC Plant Biol., 25.","DOI":"10.1186\/s12870-025-06707-3"},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"1431","DOI":"10.1104\/pp.016915","article-title":"One-Carbon Metabolism in Plants. Regulation of Tetrahydrofolate Synthesis during Germination and Seedling Development","volume":"131","author":"Jabrin","year":"2003","journal-title":"Plant Physiol."},{"key":"ref_75","doi-asserted-by":"crossref","unstructured":"Song, Y., Gao, X., and Wu, Y. (2021). Key Metabolite Differences Between Korean Pine (Pinus koraiensis) Seeds with Primary Physiological Dormancy and No-Dormancy. Front. Plant Sci., 12.","DOI":"10.3389\/fpls.2021.767108"},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"982","DOI":"10.1111\/tpj.12350","article-title":"Legume Adaptation to Sulfur Deficiency Revealed by Comparing Nutrient Allocation and Seed Traits in Medicago truncatula","volume":"76","author":"Zuber","year":"2013","journal-title":"Plant J."},{"key":"ref_77","doi-asserted-by":"crossref","unstructured":"Huang, X., Chao, D., Koprivova, A., Danku, J., Wirtz, M., M\u00fcller, S., Sandoval, F.J., Bauwe, H., Roje, S., and Dilkes, B. (2016). Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana. PLoS Genet., 12.","DOI":"10.1371\/journal.pgen.1006298"},{"key":"ref_78","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1104\/pp.19.00528","article-title":"METHIONINE SYNTHASE1 Is Involved in Chromatin Silencing by Maintaining DNA and Histone Methylation","volume":"181","author":"Yan","year":"2019","journal-title":"Plant Physiol."},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1093\/plphys\/kiad330","article-title":"Cystathionine \u03b3-Synthase Expression in Seeds Alters Metabolic and DNA Methylation Profiles in Arabidopsis","volume":"193","author":"Girija","year":"2023","journal-title":"Plant Physiol."},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"102410","DOI":"10.1016\/j.pbi.2023.102410","article-title":"A Review of the Role of Metabolites in Vegetative Desiccation Tolerance of Angiosperms","volume":"75","author":"Dace","year":"2023","journal-title":"Curr. Opin. Plant Biol."},{"key":"ref_81","doi-asserted-by":"crossref","unstructured":"Chen, H., Shi, F., Tong, B., and Lu, Y. (2025). Metabolomic Profiling of Desiccation Response in Recalcitrant Quercus acutissima Seeds. Agronomy, 15.","DOI":"10.3390\/agronomy15071738"},{"key":"ref_82","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1007\/s11103-025-01596-4","article-title":"Comparative Proteomic Analysis of Desiccation Responses in Recalcitrant Quercus acutissima Seeds","volume":"115","author":"Chen","year":"2025","journal-title":"Plant Mol. Biol."},{"key":"ref_83","doi-asserted-by":"crossref","first-page":"e70228","DOI":"10.1111\/ppl.70228","article-title":"Signalling and Regulation of Plant Development by Carbon\/Nitrogen Balance","volume":"177","author":"Pernas","year":"2025","journal-title":"Physiol. Plant."},{"key":"ref_84","doi-asserted-by":"crossref","unstructured":"Waheed, M., Haq, S.M., Arshad, F., Vitasovi\u0107-Kosi\u0107, I., Bussmann, R.W., Hashem, A., and Abd-Allah, E.F. (2024). Xanthium strumarium L., an Invasive Species in the Subtropics: Prediction of Potential Distribution Areas and Climate Adaptability in Pakistan. BMC Ecol. Evol., 24.","DOI":"10.1186\/s12862-024-02310-6"},{"key":"ref_85","doi-asserted-by":"crossref","unstructured":"Jin, D., Wu, M., Li, B., B\u00fccker, B., Keil, P., Zhang, S., Li, J., Kang, D., Liu, J., and Dong, J. (2018). The COP9 Signalosome Regulates Seed Germination by Facilitating Protein Degradation of RGL2 and ABI5. PLoS Genet., 14.","DOI":"10.1371\/journal.pgen.1007237"},{"key":"ref_86","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1111\/jipb.12806","article-title":"Central Role of the LEAFY COTYLEDON1 Transcription Factor in Seed Development","volume":"61","author":"Jo","year":"2019","journal-title":"J. Integr. Plant Biol."},{"key":"ref_87","doi-asserted-by":"crossref","first-page":"E6710","DOI":"10.1073\/pnas.1707957114","article-title":"LEC1 Sequentially Regulates the Transcription of Genes Involved in Diverse Developmental Processes during Seed Development","volume":"114","author":"Pelletier","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_88","doi-asserted-by":"crossref","first-page":"1068","DOI":"10.1126\/science.1173041","article-title":"Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR\/PYL Family of START Proteins","volume":"324","author":"Park","year":"2009","journal-title":"Science"},{"key":"ref_89","doi-asserted-by":"crossref","unstructured":"Fidler, J., Graska, J., Gietler, M., Nykiel, M., Prabucka, B., Muszy, E., Morkunas, I., Rybarczyk-p\u0142o, A., Muszy\u2019nska, E., and Morkunas, I. (2022). PYR\/PYL\/RCAR Receptors Play a Vital Role in the Abscisic-Acid-Dependent Responses of Plants to External or Internal Stimuli. Cells, 11.","DOI":"10.3390\/cells11081352"},{"key":"ref_90","doi-asserted-by":"crossref","first-page":"6838","DOI":"10.1093\/jxb\/erac337","article-title":"Regulation of Primary Seed Dormancy by MAJOR LATEX PROTEIN-LIKE PROTEIN329 in Arabidopsis Is Dependent on DNA-BINDING ONE ZINC FINGER6","volume":"73","author":"Chong","year":"2022","journal-title":"J. Exp. Bot."},{"key":"ref_91","doi-asserted-by":"crossref","first-page":"596","DOI":"10.1111\/nph.16713","article-title":"ABI5 Modulates Seed Germination via Feedback Regulation of the Expression of the PYR\/PYL\/RCAR ABA Receptor Genes","volume":"228","author":"Zhao","year":"2020","journal-title":"New Phytol."},{"key":"ref_92","doi-asserted-by":"crossref","first-page":"6417","DOI":"10.1093\/jxb\/erz385","article-title":"ERECTA Receptor-Kinases Play a Key Role in the Appropriate Timing of Seed Germination under Changing Salinity","volume":"70","author":"Nanda","year":"2019","journal-title":"J. Exp. Bot."},{"key":"ref_93","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1016\/j.febslet.2013.10.047","article-title":"The Seed Dormancy Defect of Arabidopsis Mutants Lacking the Transcript Elongation Factor TFIIS Is Caused by Reduced Expression of the DOG1 Gene","volume":"588","author":"Mortensen","year":"2014","journal-title":"FEBS Lett."},{"key":"ref_94","doi-asserted-by":"crossref","first-page":"3897","DOI":"10.1093\/jxb\/erw211","article-title":"An Evolutionary Perspective of AMPK\u2013TOR Signaling in the Three Domains of Life","volume":"67","author":"Roustan","year":"2016","journal-title":"J. Exp. Bot."},{"key":"ref_95","doi-asserted-by":"crossref","first-page":"644","DOI":"10.1093\/pcp\/pcp022","article-title":"Glucose-Induced Delay of Seed Germination in Rice Is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis","volume":"50","author":"Zhu","year":"2009","journal-title":"Plant Cell Physiol."},{"key":"ref_96","unstructured":"Miatton, E. (2012). Characterization of PDF1 and Its Interaction with DELAY OF GERMINATION1 (DOG1) in the Control of Seed Dormancy in Arabidopsis thaliana. [Ph.D. Thesis, Universit\u00e4t zu K\u00f6ln]."},{"key":"ref_97","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1038\/ncb2151","article-title":"PP2A Activates Brassinosteroid-Responsive Gene Expression and Plant Growth by Dephosphorylating BZR1","volume":"13","author":"Tang","year":"2011","journal-title":"Nat. Cell Biol."},{"key":"ref_98","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1093\/pcp\/pct017","article-title":"HONSU, a Protein Phosphatase 2C, Regulates Seed Dormancy by Inhibiting ABA Signaling in Arabidopsis","volume":"54","author":"Kim","year":"2013","journal-title":"Plant Cell Physiol."},{"key":"ref_99","first-page":"72","article-title":"DELAY OF GERMINATION1 Requires PP2C Phosphatases of the ABA Signalling Pathway to Control Seed Dormancy","volume":"18","author":"Kramer","year":"2017","journal-title":"Nat. Commun."},{"key":"ref_100","doi-asserted-by":"crossref","first-page":"791","DOI":"10.1105\/tpc.16.00573","article-title":"Dual Role of the Histone Variant H2A.Z in Transcriptional Regulation of Stress-Response Genes","volume":"29","author":"Sura","year":"2017","journal-title":"Plant Cell"},{"key":"ref_101","doi-asserted-by":"crossref","unstructured":"Guo, P., Wang, T.J., Wang, S., Peng, X., Kim, D.H., and Liu, Y. (2024). Arabidopsis Histone Variant H2A.X Functions in the DNA Damage-Coupling Abscisic Acid Signaling Pathway. Int. J. Mol. Sci., 25.","DOI":"10.3390\/ijms25168940"},{"key":"ref_102","doi-asserted-by":"crossref","first-page":"6891","DOI":"10.1038\/s41467-024-51153-8","article-title":"HMGA1 Orchestrates Chromatin Compartmentalization and Sequesters Genes into 3D Networks Coordinating Senescence Heterogeneity","volume":"15","author":"Olan","year":"2024","journal-title":"Nat. Commun."},{"key":"ref_103","doi-asserted-by":"crossref","first-page":"640","DOI":"10.1093\/plphys\/kiae041","article-title":"The Plant POLYMERASE-ASSOCIATED FACTOR1 Complex Links Transcription and H2B Monoubiquitination Genome Wide","volume":"195","author":"Bourbousse","year":"2024","journal-title":"Plant Physiol."},{"key":"ref_104","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1105\/tpc.106.049221","article-title":"The Absence of Histone H2B Monoubiquitination in the Arabidopsis Hub1 (Rdo4) Mutant Reveals a Role for Chromatin Remodeling in Seed Dormancy","volume":"19","author":"Liu","year":"2007","journal-title":"Plant Cell"},{"key":"ref_105","doi-asserted-by":"crossref","first-page":"2056","DOI":"10.1105\/tpc.113.111922","article-title":"Arabidopsis Root Initiation Defective1, a DEAH-Box RNA Helicase Involved in Pre-MRNA Splicing, Is Essential for Plant Development","volume":"25","author":"Ohtani","year":"2013","journal-title":"Plant Cell"},{"key":"ref_106","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1007\/s11103-025-01587-5","article-title":"ROOT INITIATION DEFECTIVE 1 Regulates Seed Germination through Transcription Rather than Alternative Splicing in a Temperature-Dependent Manner","volume":"115","author":"Zhou","year":"2025","journal-title":"Plant Mol. Biol."},{"key":"ref_107","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1105\/tpc.112.108191","article-title":"Arabidopsis Paired Amphipathic Helix Proteins SNL1 and SNL2 Redundantly Regulate Primary Seed Dormancy via Abscisic Acid-Ethylene Antagonism Mediated by Histone Deacetylation","volume":"25","author":"Wang","year":"2013","journal-title":"Plant Cell"},{"key":"ref_108","doi-asserted-by":"crossref","first-page":"13412","DOI":"10.1038\/ncomms13412","article-title":"Arabidopsis Seed Germination Speed Is Controlled by SNL Histone Deacetylase-Binding Factor-Mediated Regulation of AUX1","volume":"7","author":"Wang","year":"2016","journal-title":"Nat. Commun."},{"key":"ref_109","doi-asserted-by":"crossref","unstructured":"Han, Y., Georgii, E., Priego-Cubero, S., Wurm, C.J., H\u00fcther, P., Huber, G., Koller, R., Becker, C., Durner, J., and Lindermayr, C. (2023). Arabidopsis Histone Deacetylase HD2A and HD2B Regulate Seed Dormancy by Repressing DELAY OF GERMINATION 1. Front. Plant Sci., 14.","DOI":"10.3389\/fpls.2023.1124899"},{"key":"ref_110","doi-asserted-by":"crossref","first-page":"3430","DOI":"10.1073\/pnas.1018242108","article-title":"MSI4\/FVE Interacts with CUL4-DDB1 and a PRC2-like Complex to Control Epigenetic Regulation of Flowering Time in Arabidopsis","volume":"108","author":"Pazhouhandeh","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_111","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1111\/tpj.15354","article-title":"Ectopic Expression of the Arabidopsis Florigen Gene FLOWERING LOCUS T in Seeds Enhances Seed Dormancy via the GA and DOG1 Pathways","volume":"107","author":"Chen","year":"2021","journal-title":"Plant J."},{"key":"ref_112","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1111\/j.1365-313X.2011.04534.x","article-title":"The Arabidopsis Trithorax-like Factor ATX1 Functions in Dehydration Stress Responses via ABA-Dependent and ABA-Independent Pathways","volume":"66","author":"Ding","year":"2011","journal-title":"Plant J."},{"key":"ref_113","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1093\/nar\/gkaa1191","article-title":"Histone Methyltransferase ATX1 Dynamically Regulates Fiber Secondary Cell Wall Biosynthesis in Arabidopsis Inflorescence Stem","volume":"49","author":"Wang","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"ref_114","doi-asserted-by":"crossref","first-page":"koaf009","DOI":"10.1093\/plcell\/koaf009","article-title":"Unraveled: The Role of Arabidopsis GTE4-EML in Transcription via Two Distinct Histone Modifications","volume":"37","author":"Ng","year":"2025","journal-title":"Plant Cell"},{"key":"ref_115","doi-asserted-by":"crossref","unstructured":"Jiang, D., Kong, N.C., Gu, X., Li, Z., and He, Y. (2011). Arabidopsis COMPASS-like Complexes Mediate Histone H3 Lysine-4 Trimethylation to Control Floral Transition and Plant Development. PLoS Genet., 7.","DOI":"10.1371\/journal.pgen.1001330"},{"key":"ref_116","doi-asserted-by":"crossref","first-page":"1014","DOI":"10.1126\/science.aar7361","article-title":"Feedback Regulation of COOLAIR Expression Controls Seed Dormancy and Flowering Time","volume":"360","author":"Chen","year":"2018","journal-title":"Science"},{"key":"ref_117","doi-asserted-by":"crossref","first-page":"4892","DOI":"10.1105\/tpc.112.105114","article-title":"The SWI2\/SNF2 Chromatin Remodeling ATPase BRAHMA Represses Abscisic Acid Responses in the Absence of the Stress Stimulus in Arabidopsis","volume":"24","author":"Han","year":"2012","journal-title":"Plant Cell"},{"key":"ref_118","doi-asserted-by":"crossref","unstructured":"Archacki, R., Buszewicz, D., Sarnowski, T.J., Sarnowska, E., Rolicka, A.T., Tohge, T., Fernie, A.R., Jikumaru, Y., Kotlinski, M., and Iwanicka-Nowicka, R. (2013). BRAHMA ATPase of the SWI\/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0058588"},{"key":"ref_119","doi-asserted-by":"crossref","first-page":"E7846","DOI":"10.1073\/pnas.1608827113","article-title":"Control of Seed Dormancy in Arabidopsis by a Cis-Acting Noncoding Antisense Transcript","volume":"113","author":"Fedak","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_120","doi-asserted-by":"crossref","unstructured":"Singh, M., Singh, S., Randhawa, H., and Singh, J. (2013). Polymorphic Homoeolog of Key Gene of RdDM Pathway, ARGONAUTE4_9 Class Is Associated with Pre-Harvest Sprouting in Wheat (Triticum aestivum L.). PLoS ONE, 8.","DOI":"10.1371\/journal.pone.0077009"},{"key":"ref_121","doi-asserted-by":"crossref","first-page":"691","DOI":"10.1111\/tpj.15064","article-title":"The Canonical RdDM Pathway Mediates the Control of Seed Germination Timing under Salinity","volume":"105","author":"Palomar","year":"2021","journal-title":"Plant J."},{"key":"ref_122","doi-asserted-by":"crossref","unstructured":"Nakabayashi, K., Bartsch, M., Ding, J., and Soppe, W.J.J. (2015). Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing. PLoS Genet., 11.","DOI":"10.1371\/journal.pgen.1005737"},{"key":"ref_123","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1146\/annurev-anchem-061516-045357","article-title":"Relative and Absolute Quantitation in Mass Spectrometry-Based Proteomics","volume":"11","author":"Ankney","year":"2018","journal-title":"Annu. Rev. Anal. Chem."},{"key":"ref_124","doi-asserted-by":"crossref","unstructured":"Bontinck, M., Van Leene, J., Gadeyne, A., De Rybel, B., Eeckhout, D., Nelissen, H., and De Jaeger, G. (2018). Recent Trends in Plant Protein Complex Analysis in a Developmental Context. Front. Plant Sci., 9.","DOI":"10.3389\/fpls.2018.00640"},{"key":"ref_125","doi-asserted-by":"crossref","unstructured":"Carrillo-Barral, N., Del Carmen Rodr\u00edguez-Gacio, M., and Matilla, A.J. (2020). Delay of Germination-1 (DOG1): A Key to Understanding Seed Dormancy. Plants, 9.","DOI":"10.3390\/plants9040480"},{"key":"ref_126","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1111\/jipb.12762","article-title":"Seed Germination and Dormancy: The Classic Story, New Puzzles, and Evolution","volume":"61","author":"Nonogaki","year":"2019","journal-title":"J. Integr. Plant Biol."},{"key":"ref_127","doi-asserted-by":"crossref","first-page":"1311","DOI":"10.1111\/nph.17646","article-title":"Temperature during Seed Maturation Controls Seed Vigour through ABA Breakdown in the Endosperm and Causes a Passive Effect on DOG1 MRNA Levels during Entry into Quiescence","volume":"232","author":"Chen","year":"2021","journal-title":"New Phytol."},{"key":"ref_128","doi-asserted-by":"crossref","first-page":"3336","DOI":"10.1111\/j.1365-294X.2011.05181.x","article-title":"DOG1 Expression Is Predicted by the Seed-Maturation Environment and Contributes to Geographical Variation in Germination in Arabidopsis thaliana","volume":"20","author":"Chiang","year":"2011","journal-title":"Mol. Ecol."},{"key":"ref_129","doi-asserted-by":"crossref","first-page":"843","DOI":"10.1093\/jxb\/erw477","article-title":"Seed Dormancy Cycling and the Regulation of Dormancy Mechanisms to Time Germination in Variable Field Environments","volume":"68","author":"Footitt","year":"2017","journal-title":"J. Exp. Bot."},{"key":"ref_130","doi-asserted-by":"crossref","first-page":"D543","DOI":"10.1093\/nar\/gkab1038","article-title":"The PRIDE Database Resources in 2022: A Hub for Mass Spectrometry-Based Proteomics Evidences","volume":"50","author":"Bai","year":"2022","journal-title":"Nucleic Acids Res."}],"container-title":["Proteomes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/2227-7382\/14\/3\/42\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,25]],"date-time":"2026-08-25T04:21:39Z","timestamp":1787631699000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/2227-7382\/14\/3\/42"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,8,21]]},"references-count":130,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2026,9]]}},"alternative-id":["proteomes14030042"],"URL":"https:\/\/doi.org\/10.3390\/proteomes14030042","relation":{},"ISSN":["2227-7382"],"issn-type":[{"value":"2227-7382","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,8,21]]}}}