{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,15]],"date-time":"2026-08-15T18:42:11Z","timestamp":1786819331390,"version":"build-2736575974"},"reference-count":126,"publisher":"MDPI AG","issue":"1","license":[{"start":{"date-parts":[[2025,12,30]],"date-time":"2025-12-30T00:00:00Z","timestamp":1767052800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Special Basic Research Service for the Central Level Public Welfare Research Institute","award":["GYZX250105"],"award-info":[{"award-number":["GYZX250105"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["42407557"],"award-info":[{"award-number":["42407557"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Project of Ecological and Environmental Protection Integration Research Institute in Yangtze River Delta","award":["ZX2023SZY118"],"award-info":[{"award-number":["ZX2023SZY118"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Toxics"],"abstract":"<jats:p>Aquaculture systems face escalating ecological risks due to the widespread use and persistence of antibiotics, which disrupt microbial-mediated nitrogen cycling and exacerbate greenhouse gas (GHG) emissions. This review synthesizes the recent research on how common antibiotics, such as sulfonamides, quinolones, tetracyclines, and macrolides, with the concentration ranging from \u03bcg\/L to mg\/L, alter microbial community structure, functional gene expression (e.g., amoA, nirK, and nosZ), and key nitrogen transformation processes. These disruptions inhibit nitrogen-removal efficiency by 25\u201355%, promote the accumulation of toxic intermediates (e.g., NH4+ and NO2\u2212), and enhance emissions of potent GHGs of nitrous oxide (N2O) and methane (CH4). The effects are influenced by antibiotic type; concentration; environmental conditions; and interactions with co-contaminants such as heavy metals (Cu2+ and Pb2+ at 50\u2013200 \u03bcg\/L) and microplastics (0.1\u201310 mg\/L), which can synergistically amplify ecological risks by 20\u201340%. The research in this field has largely focused on the toxicity of individual antibiotics, so significant gaps remain regarding combined pollution effects, long-term microbial adaptation, and molecular-scale mechanisms. This review synthesizes research on the impacts of aquaculture antibiotics on microbial nitrogen cycling and GHG emissions, identifying key mechanisms and research gaps. Its significance lies in laying a scientific foundation for integrated antibiotics pollution control strategies and bridging basic research with practical aquaculture management to advance the sustainability of aquaculture ecosystems.<\/jats:p>","DOI":"10.3390\/toxics14010043","type":"journal-article","created":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T16:08:00Z","timestamp":1767197280000},"page":"43","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Review of the Effects of Antibiotics on Nitrogen Cycle and Greenhouse Gas Emissions in Aquaculture Water"],"prefix":"10.3390","volume":"14","author":[{"given":"Hanxiao","family":"Wang","sequence":"first","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lan","family":"Zhang","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shicheng","family":"Zhang","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"},{"name":"Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haoyan","family":"Li","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"},{"name":"Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Changyan","family":"Sun","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"},{"name":"Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yan","family":"Wang","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2192-9404","authenticated-orcid":false,"given":"Xiaoshuai","family":"Hang","sequence":"additional","affiliation":[{"name":"Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2025,12,30]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","first-page":"114645","DOI":"10.1016\/j.marpolbul.2023.114645","article-title":"Usage of antibiotics in aquaculture and the impact on coastal waters","volume":"188","author":"Adenaya","year":"2023","journal-title":"Mar. 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