{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T19:08:04Z","timestamp":1793387284255,"version":"4.5.0"},"reference-count":57,"publisher":"MDPI AG","issue":"5","license":[{"start":{"date-parts":[[2025,5,8]],"date-time":"2025-05-08T00:00:00Z","timestamp":1746662400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["TropicalMed"],"abstract":"<jats:p>Sub-Saharan Africa has made remarkable strides in genomic surveillance, with more than 50% of countries now equipped with an in-country sequencing capacity and 98% actively contributing data to public genomic repositories. Catalyzed by the momentum of the COVID-19 pandemic, these advancements have extended far beyond SARS-CoV-2 to address a broader spectrum of public health threats, including antimicrobial resistance (AMR) and other emerging infectious diseases. This review explores these transformative achievements, identifies remaining gaps, and outlines strategic priorities for embedding genomics into the continent\u2019s health systems. With a focus on sustainability, equity, and cross-sector collaboration, it positions Africa as a driver of global innovation in pathogen surveillance, uniquely leveraging its genetic and epidemiological diversity.<\/jats:p>","DOI":"10.3390\/tropicalmed10050129","type":"journal-article","created":{"date-parts":[[2025,5,8]],"date-time":"2025-05-08T07:41:47Z","timestamp":1746690107000},"page":"129","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":32,"title":["The Case for Genomic Surveillance in Africa"],"prefix":"10.3390","volume":"10","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2856-345X","authenticated-orcid":false,"given":"Rachel","family":"Ochola","sequence":"first","affiliation":[{"name":"School of Health, Department of Biomedical Sciences, Technical University of Kenya, Nairobi P.O. Box 52428-00200, Kenya"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2025,5,8]]},"reference":[{"key":"ref_1","unstructured":"Africa CDC (2025, February 25). Africa CDC Urges Immediate Action to Protect Lives Amid Escalating Health and Security Crises. 31 January 2025. Available online: https:\/\/africacdc.org\/news-item\/africa-cdc-urges-immediate-action-to-protect-lives-amid-escalating-health-and-security-crises\/."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"565","DOI":"10.1038\/d41586-020-01265-0","article-title":"Let Africa into the market for COVID-19 diagnostics","volume":"580","author":"Nkengasong","year":"2020","journal-title":"Nature"},{"key":"ref_3","unstructured":"WHO (2022). Global Genomic Surveillance Strategy for Pathogens with Pandemic and Epidemic Potential, 2022\u20132032, WHO. 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