{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T20:20:43Z","timestamp":1792182043927,"version":"4.4.0"},"reference-count":55,"publisher":"MDPI AG","issue":"7","license":[{"start":{"date-parts":[[2023,6,30]],"date-time":"2023-06-30T00:00:00Z","timestamp":1688083200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Santa Catarina Research Foundation","award":["SIGPEX 201917940"],"award-info":[{"award-number":["SIGPEX 201917940"]}]},{"name":"Santa Catarina Research Foundation","award":["23080.051764\/2020-78"],"award-info":[{"award-number":["23080.051764\/2020-78"]}]},{"name":"Santa Catarina Research Foundation","award":["SIGPEX 202021165"],"award-info":[{"award-number":["SIGPEX 202021165"]}]},{"name":"Federal University of Santa Catarina (UFSC)","award":["SIGPEX 201917940"],"award-info":[{"award-number":["SIGPEX 201917940"]}]},{"name":"Federal University of Santa Catarina (UFSC)","award":["23080.051764\/2020-78"],"award-info":[{"award-number":["23080.051764\/2020-78"]}]},{"name":"Federal University of Santa Catarina (UFSC)","award":["SIGPEX 202021165"],"award-info":[{"award-number":["SIGPEX 202021165"]}]},{"DOI":"10.13039\/501100007082","name":"Master fellowship of Giulia Von T\u00f6nnemann Pilati","doi-asserted-by":"publisher","award":["SIGPEX 201917940"],"award-info":[{"award-number":["SIGPEX 201917940"]}],"id":[{"id":"10.13039\/501100007082","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100007082","name":"Master fellowship of Giulia Von T\u00f6nnemann Pilati","doi-asserted-by":"publisher","award":["23080.051764\/2020-78"],"award-info":[{"award-number":["23080.051764\/2020-78"]}],"id":[{"id":"10.13039\/501100007082","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100007082","name":"Master fellowship of Giulia Von T\u00f6nnemann Pilati","doi-asserted-by":"publisher","award":["SIGPEX 202021165"],"award-info":[{"award-number":["SIGPEX 202021165"]}],"id":[{"id":"10.13039\/501100007082","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Viruses"],"abstract":"<jats:p>Colibacillosis is a disease caused by Escherichia coli and remains a major concern in poultry production, as it leads to significant economic losses due to carcass condemnation and clinical symptoms. The development of antimicrobial resistance is a growing problem of worldwide concern. Lysogenic bacteriophages are effective vectors for acquiring and disseminating antibiotic resistance genes (ARGs). The aim of this study was to investigate the complete genome of Escherichia coli isolates from the femurs of Brazilian broiler chickens in order to investigate the presence of antimicrobial resistance genes associated with bacteriophages. Samples were collected between August and November 2021 from broiler batches from six Brazilian states. Through whole genome sequencing (WGS), data obtained were analyzed for the presence of antimicrobial resistance genes. Antimicrobial resistance genes against the aminoglycosides class were detected in 79.36% of the isolates; 74.6% had predicted sulfonamides resistance genes, 63.49% had predicted resistance genes against \u03b2-lactams, and 49.2% of the isolates had at least one of the tetracycline resistance genes. Among the detected genes, 27 have been described in previous studies and associated with bacteriophages. The findings of this study highlight the role of bacteriophages in the dissemination of ARGs in the poultry industry.<\/jats:p>","DOI":"10.3390\/v15071485","type":"journal-article","created":{"date-parts":[[2023,6,30]],"date-time":"2023-06-30T16:08:32Z","timestamp":1688141312000},"page":"1485","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":13,"title":["Bacteriophage-Associated Antimicrobial Resistance Genes in Avian Pathogenic Escherichia coli Isolated from Brazilian Poultry"],"prefix":"10.3390","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9689-0279","authenticated-orcid":false,"given":"Giulia Von T\u00f6nnemann","family":"Pilati","sequence":"first","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rafael Dorighello","family":"Cadamuro","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0309-4877","authenticated-orcid":false,"given":"Vilmar Benetti","family":"Filho","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0248-3723","authenticated-orcid":false,"given":"Mariane","family":"Dahmer","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2986-6900","authenticated-orcid":false,"given":"Mariana Alves","family":"Elois","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beatriz Pereira","family":"Savi","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gleidson Biasi Carvalho","family":"Salles","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"},{"name":"Zoetis Industry of Veterinary Products LTDA, S\u00e3o Paulo 04709-111, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3471-8884","authenticated-orcid":false,"given":"Eduardo Correa","family":"Muniz","sequence":"additional","affiliation":[{"name":"Zoetis Industry of Veterinary Products LTDA, S\u00e3o Paulo 04709-111, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gislaine","family":"Fongaro","sequence":"additional","affiliation":[{"name":"Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florian\u00f3polis 88040-900, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1968","published-online":{"date-parts":[[2023,6,30]]},"reference":[{"key":"ref_1","unstructured":"ABPA (Associa\u00e7\u00e3o Brasileira de Prote\u00edna Animal) (2023). 2023 Relat\u00f3rio Anual, ABPA."},{"key":"ref_2","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1186\/s40104-022-00786-0","article-title":"Production Systems and Important Antimicrobial Resistant-Pathogenic Bacteria in Poultry: A Review","volume":"13","author":"Mak","year":"2022","journal-title":"J. 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