{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,11]],"date-time":"2025-12-11T21:02:10Z","timestamp":1765486930645,"version":"build-2065373602"},"reference-count":60,"publisher":"MDPI AG","issue":"6","license":[{"start":{"date-parts":[[2023,5,29]],"date-time":"2023-05-29T00:00:00Z","timestamp":1685318400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"CULTIVAR","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}]},{"name":"Regional Operational Programme Centro 2020","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}]},{"name":"European Union","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}]},{"DOI":"10.13039\/501100001871","name":"R&amp;D Unit Centre for Functional Ecology\u2014Science for People and the Planet (CFE)","doi-asserted-by":"publisher","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Associated Laboratory TERRA","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}]},{"name":"FCT\/MCTES","award":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"],"award-info":[{"award-number":["CENTRO- 01-0145-FEDER-000020","UIDB\/04004\/2020","LA\/P\/0092\/2020","UI\/BD\/150981\/2021"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Agronomy"],"abstract":"<jats:p>In Portugal, the Cova da Beira region is well-known for the production of Prunus spp. and is considered the main peach production area in the country. In the spring of 2021 and 2022, field surveys in peach and nectarine orchards showed symptoms of decline such as cankers, gummosis, dry branches, abortion of flowers, mummified fruits and the partial or total death of some plants. Brown rot is caused by three species of the genus Monilinia, M. fructigena, M. laxa and M. fructicola, the last is an OEPP\/EPPO A2 quarantine organism on peach trees. Brown rot disease had previously been described in the Cova da Beira region, however, the recent high mortality and severity of symptoms raised doubts as to the species involved. Symptomatic plant material was collected from thirteen orchards and used for fungal isolation and molecular detection according to the OEPP\/EPPO standard. M. fructicola was confirmed morphologically and molecularly in two orchards, and molecularly (duplex real-time PCR) detected in two others. Whole genome sequencing using Oxford Nanopore MinION was also carried out to confirm the identification. Pathogenicity tests were performed on peach, nectarine and sweet cherry fruit according to Koch\u2019s postulates. Based on all the results obtained, we report the first detection of M. fructicola in P. persica in Portugal.<\/jats:p>","DOI":"10.3390\/agronomy13061493","type":"journal-article","created":{"date-parts":[[2023,5,29]],"date-time":"2023-05-29T03:39:36Z","timestamp":1685331576000},"page":"1493","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Morphological, Molecular and Genomic Identification and Characterisation of Monilinia fructicola in Prunus persica from Portugal"],"prefix":"10.3390","volume":"13","author":[{"given":"Elsa","family":"Baltazar","sequence":"first","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"}]},{"given":"Sara","family":"Rodrigues","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"Laboratory for Phytopathology, Instituto Pedro Nunes, R. Pedro Nunes, 3030-199 Coimbra, Portugal"}]},{"given":"Aitana","family":"Ares","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"Laboratory for Phytopathology, Instituto Pedro Nunes, R. Pedro Nunes, 3030-199 Coimbra, Portugal"}]},{"given":"Alexandra","family":"Camelo","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"CATAA\u2014Centro de Apoio Tecnol\u00f3gico Agro-Alimentar, Zona Industrial de Castelo Branco, Rua A, 6000-459 Castelo Branco, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3767-9515","authenticated-orcid":false,"given":"In\u00eas","family":"Brand\u00e3o","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"CATAA\u2014Centro de Apoio Tecnol\u00f3gico Agro-Alimentar, Zona Industrial de Castelo Branco, Rua A, 6000-459 Castelo Branco, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9800-4186","authenticated-orcid":false,"given":"Christophe","family":"Espirito Santo","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"CATAA\u2014Centro de Apoio Tecnol\u00f3gico Agro-Alimentar, Zona Industrial de Castelo Branco, Rua A, 6000-459 Castelo Branco, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7845-6046","authenticated-orcid":false,"given":"Jo\u00e3o","family":"Trov\u00e3o","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"Laboratory for Phytopathology, Instituto Pedro Nunes, R. Pedro Nunes, 3030-199 Coimbra, Portugal"}]},{"given":"Eva","family":"Garcia","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"Laboratory for Phytopathology, Instituto Pedro Nunes, R. Pedro Nunes, 3030-199 Coimbra, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7028-2873","authenticated-orcid":false,"given":"Joana","family":"Costa","sequence":"additional","affiliation":[{"name":"University of Coimbra - Center for Functional Ecology Science for People & the Planet, TERRA Associated Laboratory, Department of Life Sciences, Cal\u00e7ada Martim de Freitas, Coimbra 3000-456, Portugal"},{"name":"Laboratory for Phytopathology, Instituto Pedro Nunes, R. Pedro Nunes, 3030-199 Coimbra, Portugal"}]}],"member":"1968","published-online":{"date-parts":[[2023,5,29]]},"reference":[{"key":"ref_1","unstructured":"(2023, January 05). Food and Agricultural Organization of the United Nations. Available online: https:\/\/www.fao.org\/faostat\/en\/#data\/QCL."},{"key":"ref_2","first-page":"721","article-title":"Prunus diversity- early and present development: A review","volume":"3","author":"Das","year":"2011","journal-title":"Int. J. Biodivers. Conserv."},{"key":"ref_3","unstructured":"Instituto Nacional de Estatistica (2023, January 05). Estatisticas Agricolas 2020. 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