{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,2]],"date-time":"2025-11-02T08:55:13Z","timestamp":1762073713997,"version":"build-2065373602"},"reference-count":84,"publisher":"MDPI AG","issue":"11","license":[{"start":{"date-parts":[[2022,11,4]],"date-time":"2022-11-04T00:00:00Z","timestamp":1667520000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Cam\u00f5es, Instituto da Coopera\u00e7\u00e3o e da L\u00edngua","award":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"],"award-info":[{"award-number":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"]}]},{"DOI":"10.13039\/501100001871","name":"FCT\u2013Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia, I.P.","doi-asserted-by":"publisher","award":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"],"award-info":[{"award-number":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Scientific Employment Stimulus-Individual Call (CEEC Individual)","doi-asserted-by":"publisher","award":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"],"award-info":[{"award-number":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Howard Hughes Medical Institute","award":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"],"award-info":[{"award-number":["UIDB\/00239\/2020","UIDP\/00329\/2020","SFRH\/BD\/113951\/2015","2021.01107.CEECIND\/CP1689\/CT0001","54108287"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Forests"],"abstract":"<jats:p>Miombo is the most extensive ecosystem in southern Africa, being strongly driven by fire, climate, herbivory, and human activity. Soils are major regulating and supporting services, sequestering nearly 50% of the overall carbon and comprising a set of yet unexploited functions. In this study, we used next-generation Illumina sequencing to assess the patterns of bacterial soil diversity in two pioneer Miombo species, Brachystegia boehmii and Brachystegia spiciformis, along a fire gradient, in ferric lixisol and cambic arenosol soils. In total, 21 phyla, 51 classes, 98 orders, 193 families, and 520 genera were found, revealing a considerably high and multifunctional diversity with a strong potential for the production of bioactive compounds and nutrient mobilization. Four abundant genera characterized the core microbiome among plant species, type of soils, or fire regime: Streptomyces, Gaiella, Chthoniobacter, and Bacillus. Nevertheless, bacterial networks revealed a higher potential for mutualistic interactions and transmission of chemical signals among phylotypes from low fire frequency sites than those from high fire frequency sites. Ecological networks also revealed the negative effects of frequent fires on the complexity of microbial communities. Functional predictions revealed the core \u201chouse-keeping\u201d metabolisms contributing to the high bacterial diversity found, suggesting its importance to the functionality of this ecosystem.<\/jats:p>","DOI":"10.3390\/f13111840","type":"journal-article","created":{"date-parts":[[2022,11,4]],"date-time":"2022-11-04T06:21:56Z","timestamp":1667542916000},"page":"1840","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Linking Bacterial Rhizosphere Communities of Two Pioneer Species, Brachystegia boehmii and B. spiciformis, to the Ecological Processes of Miombo Woodlands"],"prefix":"10.3390","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0978-4123","authenticated-orcid":false,"given":"Camilo B. S.","family":"Ant\u00f3nio","sequence":"first","affiliation":[{"name":"BioEducation Consortium (Gorongosa National Park, Instituto Superior Polit\u00e9cnico de Manica, Universidade L\u00fario, Universidade Zambeze, and Universidade de Lisboa), Gorongosa National Park, Gorongosa P.O. Box 1983, Mozambique"},{"name":"Forest Research Center (CEF) & Associated Laboratory TERRA, School of Agriculture, University of Lisbon, 1349-017 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1381-0948","authenticated-orcid":false,"given":"Chinedu","family":"Obieze","sequence":"additional","affiliation":[{"name":"Africa Centre of Excellence in Oilfield Chemicals Research, University of Port Harcourt, Port Harcourt 500272, Rivers State, Nigeria"},{"name":"Centre D\u2019\u00e9tude de la For\u00eat, Institut de Biologie Int\u00e9grative et Des Syst\u00e8mes, Universit\u00e9 Laval, Quebec City, QC G1V 0A6, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7808-4238","authenticated-orcid":false,"given":"Jo\u00e3o","family":"Jacinto","sequence":"additional","affiliation":[{"name":"Ce3C\u2013Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ci\u00eancias, Universidade de Lisboa, 1649-004 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5370-965X","authenticated-orcid":false,"given":"Ivete S. A.","family":"Maquia","sequence":"additional","affiliation":[{"name":"Forest Research Center (CEF) & Associated Laboratory TERRA, School of Agriculture, University of Lisbon, 1349-017 Lisboa, Portugal"},{"name":"Biotechnology Center, Eduardo Mondlane University, Maputo 3453, Mozambique"}]},{"given":"Tara","family":"Massad","sequence":"additional","affiliation":[{"name":"Department of Scientific Services, Gorongosa National Park, Gorongosa P.O. Box 1983, Mozambique"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7639-7214","authenticated-orcid":false,"given":"Jos\u00e9 C.","family":"Ramalho","sequence":"additional","affiliation":[{"name":"Forest Research Center (CEF) & Associated Laboratory TERRA, School of Agriculture, University of Lisbon, 1349-017 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5369-5905","authenticated-orcid":false,"given":"Natasha S.","family":"Ribeiro","sequence":"additional","affiliation":[{"name":"Department of Environmental Sciences, University of Virginia, Charlottesville, VA 22903, USA"},{"name":"Faculty of Agronomy and Forest Engineering, Eduardo Mondlane University, Maputo 3453, Mozambique"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4396-7073","authenticated-orcid":false,"given":"Cristina","family":"M\u00e1guas","sequence":"additional","affiliation":[{"name":"BioEducation Consortium (Gorongosa National Park, Instituto Superior Polit\u00e9cnico de Manica, Universidade L\u00fario, Universidade Zambeze, and Universidade de Lisboa), Gorongosa National Park, Gorongosa P.O. Box 1983, Mozambique"},{"name":"Ce3C\u2013Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ci\u00eancias, Universidade de Lisboa, 1649-004 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9788-4831","authenticated-orcid":false,"given":"Isabel","family":"Marques","sequence":"additional","affiliation":[{"name":"Forest Research Center (CEF) & Associated Laboratory TERRA, School of Agriculture, University of Lisbon, 1349-017 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6071-6460","authenticated-orcid":false,"given":"Ana I.","family":"Ribeiro-Barros","sequence":"additional","affiliation":[{"name":"BioEducation Consortium (Gorongosa National Park, Instituto Superior Polit\u00e9cnico de Manica, Universidade L\u00fario, Universidade Zambeze, and Universidade de Lisboa), Gorongosa National Park, Gorongosa P.O. Box 1983, Mozambique"},{"name":"Forest Research Center (CEF) & Associated Laboratory TERRA, School of Agriculture, University of Lisbon, 1349-017 Lisboa, Portugal"}]}],"member":"1968","published-online":{"date-parts":[[2022,11,4]]},"reference":[{"key":"ref_1","unstructured":"WWF Miombo Eco-Region (2012). \u201cHome of the Zambezi\u201d. Conservation Strategy: 2011\u20132020, WWF."},{"key":"ref_2","doi-asserted-by":"crossref","unstructured":"Macave, O.A., Ribeiro, N.S., Ribeiro, A.I., Cha\u00faque, A., Bandeira, R., Branquinho, C., and Washington-Allen, R. (2022). Modelling Aboveground Biomass of Miombo Woodlands in Niassa Special Reserve, Northern Mozambique. Forests, 13.","DOI":"10.3390\/f13020311"},{"key":"ref_3","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1016\/j.foreco.2015.11.011","article-title":"Miombo woodland under threat: Consequences for tree diversity and carbon storage","volume":"361","author":"Jew","year":"2016","journal-title":"For. Ecol. Manag."},{"key":"ref_4","first-page":"629317","article-title":"Management, Growth, and Carbon Storage in Miombo Woodlands of Tanzania","volume":"2014","author":"Lupala","year":"2014","journal-title":"Int. J. For. Res."},{"key":"ref_5","doi-asserted-by":"crossref","unstructured":"Ribeiro-Barros, A.I., Silva, M.J., Moura, I., Ramalho, J.C., M\u00e1guas-Hanson, C., and Ribeiro, N.S. (2018). The Potential of Tree and Shrub Legumes in Agroforestry Systems. Nitrogen in Agriculture-Updates, IntechOpen.","DOI":"10.5772\/intechopen.69995"},{"key":"ref_6","doi-asserted-by":"crossref","unstructured":"Ribeiro, N.S., Saatchi, S.S., Shugart, H.H., and Washington-Allen, R.A. (2008). Aboveground biomass and leaf area index (LAI) mapping for Niassa Reserve, northern Mozambique. J. Geophys. Res. Biogeosciences, 113.","DOI":"10.1029\/2007JG000550"},{"key":"ref_7","doi-asserted-by":"crossref","first-page":"476","DOI":"10.1016\/j.sajb.2020.09.024","article-title":"Growth and functional traits of Julbernardia globiflora (Benth) resprouts and seedlings in response to fire frequency and herbivory in miombo woodlands","volume":"135","author":"Chinder","year":"2020","journal-title":"S. Afr. J. Bot."},{"key":"ref_8","doi-asserted-by":"crossref","first-page":"102625","DOI":"10.1016\/j.forpol.2021.102625","article-title":"Prediction of forest parameters and carbon accounting under different fire regimes in Miombo woodlands, Niassa Special Reserve, Northern Mozambique","volume":"133","author":"Ribeiro","year":"2021","journal-title":"For. Policy Econ."},{"key":"ref_9","doi-asserted-by":"crossref","unstructured":"Maquia, I.S.A., Fareleira, P., Castro, I.V.E., Soares, R., Brito, D.R.A., Mbanze, A.A., Cha\u00faque, A., M\u00e1guas, C., Ezeokoli, O.T., and Ribeiro, N.S. (2021). The nexus between fire and soil bacterial diversity in the african miombo woodlands of niassa special reserve, mozambique. Microorganisms, 9.","DOI":"10.3390\/microorganisms9081562"},{"key":"ref_10","doi-asserted-by":"crossref","first-page":"2465","DOI":"10.1038\/ismej.2015.57","article-title":"Forest harvesting reduces the soil metagenomic potential for biomass decomposition","volume":"9","author":"Cardenas","year":"2015","journal-title":"ISME J."},{"key":"ref_11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jksus.2013.05.001","article-title":"Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective","volume":"26","author":"Ahemad","year":"2014","journal-title":"J. King Saud Univ.-Sci."},{"key":"ref_12","doi-asserted-by":"crossref","first-page":"4791","DOI":"10.1007\/s00253-021-11377-w","article-title":"The profile of the soil microbiota in the Cerrado is influenced by land use","volume":"105","year":"2021","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"ref_13","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/S0378-1127(99)00032-8","article-title":"Fire effects on belowground sustainability: A review and synthesis","volume":"Volume 122","author":"Neary","year":"1999","journal-title":"Forest Ecology and Management"},{"key":"ref_14","doi-asserted-by":"crossref","unstructured":"Maquia, I.S., Fareleira, P., Castro, I.V.E., Brito, D.R.A., Soares, R., Cha\u00faque, A., Ferreira-Pinto, M.M., Lumini, E., Berruti, A., and Ribeiro, N.S. (2020). Mining the microbiome of key species from african savanna woodlands: Potential for soil health improvement anwd plant growth promotion. Microorganisms, 8.","DOI":"10.3390\/microorganisms8091291"},{"key":"ref_15","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1016\/j.syapm.2016.05.004","article-title":"Identification of symbiotic nitrogen-fixing bacteria from three African leguminous trees in Gorongosa National Park","volume":"39","author":"Teixeira","year":"2016","journal-title":"Syst. Appl. Microbiol."},{"key":"ref_16","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1080\/10256010903084126","article-title":"Natural abundances of 15N and 13C in leaves of some N2-fixing and non-N2-fixing trees and shrubs in Syria","volume":"45","author":"Kurdali","year":"2009","journal-title":"Isotopes Environ. Health Stud."},{"key":"ref_17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s11104-015-2542-1","article-title":"Ecological interpretations of nitrogen isotope ratios of terrestrial plants and soils","volume":"396","author":"Craine","year":"2015","journal-title":"Plant Soil"},{"key":"ref_18","doi-asserted-by":"crossref","first-page":"gc735","DOI":"10.1111\/oik.03810","article-title":"N\/P imbalance as a key driver for the invasion of oligotrophic dune systems by a woody legume","volume":"126","author":"Ulm","year":"2017","journal-title":"Oikos"},{"key":"ref_19","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1007\/s10725-010-9511-8","article-title":"Alleviation of salinity stress in broccoli using foliar urea or methyl-jasmonate: Analysis of growth, gas exchange, and isotope composition","volume":"63","year":"2011","journal-title":"Plant Growth Regul."},{"key":"ref_20","doi-asserted-by":"crossref","unstructured":"Ribeiro, N.S., Grundy, I.M., Gon\u00e7alves, F.M.P., Moura, I., Santos, M.J., Kamoto, J., Ribeiro-Barros, A.I., and Gandiwa, E. (2020). People in the Miombo Woodlands: Socio-Ecological Dynamics. Miombo Woodlands in a Changing Environment: Securing the Resilience and Sustainability of People and Woodlands, Springer International Publishing.","DOI":"10.1007\/978-3-030-50104-4"},{"key":"ref_21","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1127\/0941-2948\/2006\/0130","article-title":"World map of the K\u00f6ppen-Geiger climate classification updated","volume":"15","author":"Kottek","year":"2006","journal-title":"Meteorol. Z."},{"key":"ref_22","unstructured":"Campbell, B.M. (1996). The Miombo in Transition: Woodlands and Welfare in Africa, Center for International Forestry Research."},{"key":"ref_23","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1890\/09-1489.1","article-title":"How does fire intensity and frequency affect miombo woodland tree populations and biomass?","volume":"21","author":"Ryan","year":"2011","journal-title":"Ecol. Appl."},{"key":"ref_24","first-page":"1","article-title":"Os solos do Parque Nacional da Gorongosa","volume":"19","author":"Fernandes","year":"1968","journal-title":"Inst. Investig. Agron\u00f3mica Mo\u00e7ambique Commun."},{"key":"ref_25","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/nmeth.f.303","article-title":"QIIME allows analysis of high-throughput community sequencing data","volume":"7","author":"Caporaso","year":"2010","journal-title":"Nat. Methods"},{"key":"ref_26","doi-asserted-by":"crossref","first-page":"2957","DOI":"10.1093\/bioinformatics\/btr507","article-title":"FLASH: Fast length adjustment of short reads to improve genome assemblies","volume":"27","author":"Salzberg","year":"2011","journal-title":"Bioinformatics"},{"key":"ref_27","doi-asserted-by":"crossref","first-page":"2194","DOI":"10.1093\/bioinformatics\/btr381","article-title":"UCHIME improves sensitivity and speed of chimera detection","volume":"27","author":"Edgar","year":"2011","journal-title":"Bioinformatics"},{"key":"ref_28","doi-asserted-by":"crossref","first-page":"e2584","DOI":"10.7717\/peerj.2584","article-title":"VSEARCH: A versatile open source tool for metagenomics","volume":"2016","author":"Rognes","year":"2016","journal-title":"PeerJ"},{"key":"ref_29","unstructured":"(2022, October 12). Greengenes, Available online: https:\/\/greengenes.lbl.gov\/Download\/."},{"key":"ref_30","unstructured":"(2022, October 12). Alpha_Diversity.Py\u2014Calculate Alpha Diversity on Each Sample in an Otu Table, Using a Variety of Alpha Diversity Metrics\u2014Homepage. Available online: http:\/\/qiime.org\/scripts\/alpha_diversity.html."},{"key":"ref_31","doi-asserted-by":"crossref","first-page":"8228","DOI":"10.1128\/AEM.71.12.8228-8235.2005","article-title":"UniFrac: A new phylogenetic method for comparing microbial communities","volume":"71","author":"Lozupone","year":"2005","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_32","doi-asserted-by":"crossref","first-page":"R60","DOI":"10.1186\/gb-2011-12-6-r60","article-title":"Metagenomic biomarker discovery and explanation","volume":"12","author":"Segata","year":"2011","journal-title":"Genome Biol."},{"key":"ref_33","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1023\/A:1010933404324","article-title":"Random forests","volume":"45","author":"Breiman","year":"2001","journal-title":"Mach. Learn."},{"key":"ref_34","doi-asserted-by":"crossref","unstructured":"Deng, Y., Jiang, Y.H., Yang, Y., He, Z., Luo, F., and Zhou, J. (2012). Molecular ecological network analyses. BMC Bioinform., 13.","DOI":"10.1186\/1471-2105-13-113"},{"key":"ref_35","doi-asserted-by":"crossref","first-page":"910","DOI":"10.1126\/science.1065103","article-title":"Specificity and stability in topology of protein networks","volume":"296","author":"Maslov","year":"2002","journal-title":"Science"},{"key":"ref_36","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1038\/nature03288","article-title":"Functional cartography of complex metabolic networks","volume":"433","author":"Amaral","year":"2005","journal-title":"Nature"},{"key":"ref_37","doi-asserted-by":"crossref","first-page":"2882","DOI":"10.1093\/bioinformatics\/btv287","article-title":"Tax4Fun: Predicting functional profiles from metagenomic 16S rRNA data","volume":"31","author":"Wemheuer","year":"2015","journal-title":"Bioinformatics"},{"key":"ref_38","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1038\/s41596-019-0264-1","article-title":"Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data","volume":"15","author":"Chong","year":"2020","journal-title":"Nat. Protoc."},{"key":"ref_39","doi-asserted-by":"crossref","unstructured":"Douglas, G.M., Maffei, V.J., Zaneveld, J., Yurgel, S.N., Brown, J.R., Taylor, C.M., Huttenhower, C., and Langille, M.G.I. (2019). PICRUSt2: An improved and extensible approach for metagenome inference. bioRxiv, 672295.","DOI":"10.1101\/672295"},{"key":"ref_40","doi-asserted-by":"crossref","first-page":"1053","DOI":"10.1093\/bioinformatics\/btx701","article-title":"Efficient comparative phylogenetics on large trees","volume":"34","author":"Louca","year":"2018","journal-title":"Bioinformatics"},{"key":"ref_41","doi-asserted-by":"crossref","unstructured":"Ye, Y., and Doak, T.G. (2009). A parsimony approach to biological pathway reconstruction\/inference for genomes and metagenomes. PLoS Comput. Biol., 5.","DOI":"10.1371\/journal.pcbi.1000465"},{"key":"ref_42","doi-asserted-by":"crossref","first-page":"D633","DOI":"10.1093\/nar\/gkx935","article-title":"The MetaCyc database of metabolic pathways and enzymes","volume":"46","author":"Caspi","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"ref_43","doi-asserted-by":"crossref","first-page":"3123","DOI":"10.1093\/bioinformatics\/btu494","article-title":"STAMP: Statistical analysis of taxonomic and functional profiles","volume":"30","author":"Parks","year":"2014","journal-title":"Bioinformatics"},{"key":"ref_44","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J. R. Stat. Soc. Ser. B"},{"key":"ref_45","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1007\/s11104-015-2666-3","article-title":"The impact of salinity on the symbiosis between Casuarina glauca Sieb. ex Spreng. and N2-fixing Frankia bacteria based on the analysis of Nitrogen and Carbon metabolism","volume":"398","author":"Duro","year":"2016","journal-title":"Plant Soil"},{"key":"ref_46","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1016\/j.marpolbul.2009.09.008","article-title":"Coastal sediments under the influence of multiple organic enrichment sources: An evaluation using carbon and nitrogen stable isotopes","volume":"60","author":"Sampaio","year":"2010","journal-title":"Mar. Pollut. Bull."},{"key":"ref_47","doi-asserted-by":"crossref","first-page":"1953","DOI":"10.1002\/rcm.6971","article-title":"Ignoring IUPAC guidelines for measurement and reporting of stable isotope abundance values affects us all","volume":"28","author":"Coleman","year":"2014","journal-title":"Rapid Commun. Mass Spectrom."},{"key":"ref_48","doi-asserted-by":"crossref","first-page":"10383","DOI":"10.1038\/s41598-019-46875-5","article-title":"Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing","volume":"9","author":"Zhou","year":"2019","journal-title":"Sci. Rep."},{"key":"ref_49","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.1016\/j.ecolind.2009.01.002","article-title":"Short-term effects of wildfire on microbial biomass and abundance in black pine plantation soils in Turkey","volume":"9","author":"Kara","year":"2009","journal-title":"Ecol. Indic."},{"key":"ref_50","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1007\/s10533-011-9654-3","article-title":"Soil microbial responses to fire and interacting global change factors in a California annual grassland","volume":"109","author":"Docherty","year":"2012","journal-title":"Biogeochemistry"},{"key":"ref_51","doi-asserted-by":"crossref","first-page":"107571","DOI":"10.1016\/j.soilbio.2019.107571","article-title":"Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient","volume":"138","author":"Whitman","year":"2019","journal-title":"Soil Biol. Biochem."},{"key":"ref_52","doi-asserted-by":"crossref","first-page":"6008","DOI":"10.1038\/s41598-017-06112-3","article-title":"The rhizosphere microbiome of burned holm-oak: Potential role of the genus Arthrobacter in the recovery of burned soils","volume":"7","author":"Villadas","year":"2017","journal-title":"Sci. Rep."},{"key":"ref_53","doi-asserted-by":"crossref","unstructured":"Villadas, P.J., D\u00edaz-D\u00edaz, S., Rodr\u00edguez-Rodr\u00edguez, A., del Arco-Aguilar, M., Fern\u00e1ndez-Gonz\u00e1lez, A.J., P\u00e9rez-Y\u00e9pez, J., Arbelo, C., Gonz\u00e1lez-Mancebo, J.M., Fern\u00e1ndez-L\u00f3pez, M., and Le\u00f3n-Barrios, M. (2019). The soil microbiome of the laurel forest in garajonay national park (La Gomera, Canary Islands): Comparing unburned and burned habitats after a wildfire. Forests, 10.","DOI":"10.3390\/f10121051"},{"key":"ref_54","first-page":"e3098","article-title":"Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests","volume":"2017","author":"Barbosa","year":"2017","journal-title":"PeerJ"},{"key":"ref_55","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1038\/s42003-018-0129-0","article-title":"Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado","volume":"1","author":"Mendes","year":"2018","journal-title":"Commun. Biol."},{"key":"ref_56","doi-asserted-by":"crossref","first-page":"14070","DOI":"10.1007\/s11356-021-16731-z","article-title":"The adaptations of the microbial communities of the savanna soil over a period of wildfire, after the first rains, and during the rainy season","volume":"29","year":"2022","journal-title":"Environ. Sci. Pollut. Res."},{"key":"ref_57","doi-asserted-by":"crossref","first-page":"art47","DOI":"10.1890\/ES11-00333.1","article-title":"Diversity and structure of soil bacterial communities associated with vultures in an African savanna","volume":"3","author":"Ganz","year":"2012","journal-title":"Ecosphere"},{"key":"ref_58","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1177\/1940082917733230","article-title":"Change in Soil Microbial Community Compositions and Diversity Following the Conversion of Tropical Forest to Rubber Plantations in Xishuangbanan, Southwest China","volume":"10","author":"Lan","year":"2017","journal-title":"Trop. Conserv. Sci."},{"key":"ref_59","doi-asserted-by":"crossref","unstructured":"Dube, J.P., Valverde, A., Steyn, J.M., Cowan, D.A., and van der Waals, J.E. (2019). Differences in bacterial diversity, Composition and function due to long-term agriculture in soils in the Eastern Free State of South Africa. Diversity, 11.","DOI":"10.3390\/d11040061"},{"key":"ref_60","doi-asserted-by":"crossref","first-page":"132712","DOI":"10.1016\/j.chemosphere.2021.132712","article-title":"Extrapolymeric substances (EPS) in Mucilaginibacter rubeus P2 displayed efficient metal(loid) bio-adsorption and production was induced by copper and zinc","volume":"291","author":"Li","year":"2022","journal-title":"Chemosphere"},{"key":"ref_61","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1038\/s41396-020-00785-x","article-title":"Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease","volume":"15","author":"Lee","year":"2021","journal-title":"ISME J."},{"key":"ref_62","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1038\/nrmicro2367","article-title":"The ecological coherence of high bacterial taxonomic ranks","volume":"8","author":"Philippot","year":"2010","journal-title":"Nat. Rev. Microbiol."},{"key":"ref_63","doi-asserted-by":"crossref","first-page":"149","DOI":"10.3389\/fmicb.2013.00149","article-title":"Bacterial chitin degradation-mechanisms and ecophysiological strategies","volume":"4","author":"Beier","year":"2013","journal-title":"Front. Microbiol."},{"key":"ref_64","doi-asserted-by":"crossref","first-page":"19964","DOI":"10.1073\/pnas.0908274106","article-title":"Highly specialized microbial diversity in hyper-arid polar desert","volume":"106","author":"Pointing","year":"2009","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_65","doi-asserted-by":"crossref","first-page":"138","DOI":"10.3390\/genes3010138","article-title":"The genetics of symbiotic nitrogen fixation: Comparative genomics of 14 rhizobia strains by resolution of protein clusters","volume":"3","author":"Black","year":"2012","journal-title":"Genes"},{"key":"ref_66","doi-asserted-by":"crossref","first-page":"2491","DOI":"10.3389\/fmicb.2018.02491","article-title":"Corrigendum: Bacillus velezensis FZB42 in 2018: The gram-positive model strain for plant growth promotion and biocontrol","volume":"9","author":"Fan","year":"2018","journal-title":"Front. Microbiol."},{"key":"ref_67","doi-asserted-by":"crossref","first-page":"211509","DOI":"10.1098\/rsos.211509","article-title":"Anti-cancer and antimicrobial potential of five soil Streptomycetes: A metabolomics-based study","volume":"9","author":"Osama","year":"2022","journal-title":"R. Soc. Open Sci."},{"key":"ref_68","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1094\/MPMI-05-19-0142-R","article-title":"Phyllosphere colonization by a soil Streptomyces sp. promotes plant defense responses against fungal infection","volume":"33","author":"Vergnes","year":"2020","journal-title":"Mol. Plant-Microbe Interact."},{"key":"ref_69","doi-asserted-by":"crossref","first-page":"e00840","DOI":"10.1002\/mbo3.840","article-title":"High-quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep-branching lineages of the phylum Actinobacteria","volume":"8","author":"Severino","year":"2019","journal-title":"Microbiologyopen"},{"key":"ref_70","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1007\/s42770-021-00437-y","article-title":"Bacterial diversity changes in agricultural soils influenced by poultry litter fertilization","volume":"52","author":"Parente","year":"2021","journal-title":"Braz. J. Microbiol."},{"key":"ref_71","doi-asserted-by":"crossref","first-page":"103252","DOI":"10.1016\/j.ejsobi.2020.103252","article-title":"Response of soil bacterial communities to the application of the herbicides imazethapyr and flumyzin","volume":"102","author":"Pertile","year":"2021","journal-title":"Eur. J. Soil Biol."},{"key":"ref_72","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1007\/s10725-004-6125-z","article-title":"Carbohydrates as regulatory factors on the rooting of Eucalyptus saligna Smith and Eucalyptus globulus Labill","volume":"45","author":"Paim","year":"2005","journal-title":"Plant Growth Regul."},{"key":"ref_73","doi-asserted-by":"crossref","first-page":"667","DOI":"10.3389\/fphys.2017.00667","article-title":"Bacillus: A biological tool for crop improvement through bio-molecular changes in adverse environments","volume":"8","author":"Radhakrishnan","year":"2017","journal-title":"Front. Physiol."},{"key":"ref_74","doi-asserted-by":"crossref","first-page":"100295","DOI":"10.1016\/j.rhisph.2020.100295","article-title":"Contrasting rhizosphere bacterial communities of healthy and wilted Dalbergia sissoo Roxb","volume":"17","author":"Joshi","year":"2021","journal-title":"forests. Rhizosphere"},{"key":"ref_75","doi-asserted-by":"crossref","first-page":"e0313220","DOI":"10.1128\/AEM.03132-20","article-title":"Rhizosphere Microbiomes in a Historical Maize-Soybean Rotation System Respond to Host Species and Nitrogen Fertilization at the Genus and Subgenus Levels","volume":"87","author":"Meier","year":"2021","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_76","doi-asserted-by":"crossref","first-page":"1692","DOI":"10.3732\/ajb.1300033","article-title":"Amino acids in the rhizosphere: From plants to microbes","volume":"100","author":"Moe","year":"2013","journal-title":"Am. J. Bot."},{"key":"ref_77","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1071\/WF17085","article-title":"Characterisation of spatial and temporal distribution of the fire regime in Niassa National Reserve, northern Mozambique","volume":"26","author":"Ribeiro","year":"2017","journal-title":"Int. J. Wildl. Fire"},{"key":"ref_78","doi-asserted-by":"crossref","unstructured":"Ezeokoli, O.T., Nuaila, V.N.A., Obieze, C.C., Muetanene, B.A., Fraga, I., Tesinde, M.N., Ndayiragije, A., Coutinho, J., Melo, A.M.P., and Adeleke, R.A. (2021). Assessing the impact of rice cultivation and off-season period on dynamics of soil enzyme activities and bacterial communities in two agro-ecological regions of mozambique. Agronomy, 11.","DOI":"10.3390\/agronomy11040694"},{"key":"ref_79","doi-asserted-by":"crossref","first-page":"E6375","DOI":"10.1073\/pnas.1720589115","article-title":"Predicting perturbation patterns from the topology of biological networks","volume":"115","author":"Santolini","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref_80","doi-asserted-by":"crossref","first-page":"115276","DOI":"10.1016\/j.watres.2019.115276","article-title":"Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants","volume":"169","author":"Zhang","year":"2020","journal-title":"Water Res."},{"key":"ref_81","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1007\/s42398-018-00039-9","article-title":"Enhanced yield of diverse varieties of chickpea (Cicer arietinum L.) by different isolates of Mesorhizobium ciceri","volume":"1","author":"Pandey","year":"2018","journal-title":"Environ. Sustain."},{"key":"ref_82","doi-asserted-by":"crossref","first-page":"2888","DOI":"10.3389\/fmicb.2019.02888","article-title":"Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens","volume":"10","author":"Ley","year":"2019","journal-title":"Front. Microbiol."},{"key":"ref_83","doi-asserted-by":"crossref","first-page":"5980","DOI":"10.1128\/AEM.70.10.5980-5987.2004","article-title":"Unexpectedly diverse Mesorhizobium strains and Rhizobium leguminosarum nodulate native legume genera of New Zealand, while introduced legume weeds are nodulated by Bradyrhizobium species","volume":"70","author":"Weir","year":"2004","journal-title":"Appl. Environ. Microbiol."},{"key":"ref_84","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/j.quascirev.2012.12.004","article-title":"Variations in carbon isotope ratios of plants across a temperature gradient along the 400 mm isoline of mean annual precipitation in north China and their relevance to paleovegetation reconstruction","volume":"63","author":"Wang","year":"2013","journal-title":"Quat. Sci. Rev."}],"container-title":["Forests"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mdpi.com\/1999-4907\/13\/11\/1840\/pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T01:10:36Z","timestamp":1760145036000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.mdpi.com\/1999-4907\/13\/11\/1840"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,11,4]]},"references-count":84,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2022,11]]}},"alternative-id":["f13111840"],"URL":"https:\/\/doi.org\/10.3390\/f13111840","relation":{},"ISSN":["1999-4907"],"issn-type":[{"type":"electronic","value":"1999-4907"}],"subject":[],"published":{"date-parts":[[2022,11,4]]}}}