{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T02:31:08Z","timestamp":1760149868546,"version":"build-2065373602"},"reference-count":112,"publisher":"MDPI AG","issue":"10","license":[{"start":{"date-parts":[[2023,9,27]],"date-time":"2023-09-27T00:00:00Z","timestamp":1695772800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"High-Quality Research Graduate Development Cooperation Project between Kasetsart University and the National Science and Technology Development Agency (NSTDA)","award":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"],"award-info":[{"award-number":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"]}]},{"name":"Thailand Science Research and Innovation through the Kasetsart University Reinventing University Program 2021","award":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"],"award-info":[{"award-number":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"]}]},{"name":"National Research Council of Thailand","award":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"],"award-info":[{"award-number":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"]}]},{"name":"Kasetsart University Research and Development Institute (KURDI)","award":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"],"award-info":[{"award-number":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"]}]},{"name":"Kasetsart University Research and Development Institute (KURDI)","award":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"],"award-info":[{"award-number":["6417400247","3\/2564","NRCT\/2565","FF(S-KU)17.66"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Fishes"],"abstract":"<jats:p>Jade perch (Scortum barcoo) has an XX\/XY sex-determination system (SDS); however, its sex chromosomes and sex-determining region remain unknown. The recent availability of the jade perch chromosome-level genomic data provides a valuable resource for pinpointing the location of functional genes and the whole genomic structure. In this study, we conducted. In silico chromosome mapping of male-specific\/linked loci of jade perch and identified a potential 11.18 Mb male-linked region localized on chromosome 19 (SBA19). Repeat annotations of the male-linked region revealed an abundance of transposable elements, particularly Ty3\/Gypsy and novel repeats. Sequence analysis of this region identified a remnant of amh gene, which is considered a potential candidate for SDS in many teleosts. A duplicate copy of amh remnant was located at SBA6. These duplicated amh copies were highly similar to those of XX\/XY SDS in teleosts, in which one copy of amh was identified on the Y sex chromosome. Taken all together, we hypothesize SBA19 as the putative sex chromosome and the 11.18 Mb male-linked region to be a potential male-determining region.<\/jats:p>","DOI":"10.3390\/fishes8100482","type":"journal-article","created":{"date-parts":[[2023,9,28]],"date-time":"2023-09-28T01:51:14Z","timestamp":1695865874000},"page":"482","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["In Silico Chromosome Mapping of the Male-Specific\/Linked Loci in the Jade Perch (Scortum barcoo) Suggests Chromosome 19 as the Putative Y Sex Chromosome"],"prefix":"10.3390","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7147-1684","authenticated-orcid":false,"given":"Thitipong","family":"Panthum","sequence":"first","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Interdisciplinary Graduate Program in Bioscience, Faculty of Science, Kasetsart University, Bangkok 10900, Thailand"},{"name":"Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"given":"Pish","family":"Wattanadilokchatkun","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"given":"Kitipong","family":"Jaisamut","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"given":"Worapong","family":"Singchat","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"given":"Syed Farhan","family":"Ahmad","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Interdisciplinary Graduate Program in Bioscience, Faculty of Science, Kasetsart University, Bangkok 10900, Thailand"},{"name":"Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7954-7348","authenticated-orcid":false,"given":"Narongrit","family":"Muangmai","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Department of Fishery Biology, Faculty of Fisheries, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"given":"Prateep","family":"Duengkae","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1328-1732","authenticated-orcid":false,"given":"Agostinho","family":"Antunes","sequence":"additional","affiliation":[{"name":"CIIMAR\/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es, Av. General Norton de Matos, s\/n, 4450-208 Porto, Portugal"},{"name":"Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5985-7258","authenticated-orcid":false,"given":"Kornsorn","family":"Srikulnath","sequence":"additional","affiliation":[{"name":"Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Interdisciplinary Graduate Program in Bioscience, Faculty of Science, Kasetsart University, Bangkok 10900, Thailand"},{"name":"Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand"},{"name":"Center of Excellence on Agricultural Biotechnology (AG-BIO\/PERDO-CHE), Bangkok 10900, Thailand"},{"name":"Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University, Bangkok 10900, Thailand"}]}],"member":"1968","published-online":{"date-parts":[[2023,9,27]]},"reference":[{"key":"ref_1","unstructured":"(2022, December 20). 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