{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,7]],"date-time":"2026-01-07T07:48:55Z","timestamp":1767772135167,"version":"build-2065373602"},"reference-count":174,"publisher":"MDPI AG","issue":"10","license":[{"start":{"date-parts":[[2023,9,26]],"date-time":"2023-09-26T00:00:00Z","timestamp":1695686400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Ler\u00f8y Seafood Group, Norwegian Seafood Research Fund","award":["FHF 901798","186971-0611"],"award-info":[{"award-number":["FHF 901798","186971-0611"]}]},{"name":"Research Council of Norway","award":["FHF 901798","186971-0611"],"award-info":[{"award-number":["FHF 901798","186971-0611"]}]},{"name":"Icelandic Research Council","award":["FHF 901798","186971-0611"],"award-info":[{"award-number":["FHF 901798","186971-0611"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genes"],"abstract":"<jats:p>Aquaculture of the lumpfish (Cyclopterus lumpus L.) has become a large, lucrative industry owing to the escalating demand for \u201ccleaner fish\u201d to minimise sea lice infestations in Atlantic salmon mariculture farms. We used over 10K genome-wide single nucleotide polymorphisms (SNPs) to investigate the spatial patterns of genomic variation in the lumpfish along the coast of Norway and across the North Atlantic. Moreover, we applied three genome scans for outliers and two genotype\u2013environment association tests to assess the signatures and patterns of local adaptation under extensive gene flow. With our \u2018global\u2019 sampling regime, we found two major genetic groups of lumpfish, i.e., the western and eastern Atlantic. Regionally in Norway, we found marginal evidence of population structure, where the population genomic analysis revealed a small portion of individuals with a different genetic ancestry. Nevertheless, we found strong support for local adaption under high gene flow in the Norwegian lumpfish and identified over 380 high-confidence environment-associated loci linked to gene sets with a key role in biological processes associated with environmental pressures and embryonic development. Our results bridge population genetic\/genomics studies with seascape genomics studies and will facilitate genome-enabled monitoring of the genetic impacts of escapees and allow for genetic-informed broodstock selection and management in Norway.<\/jats:p>","DOI":"10.3390\/genes14101870","type":"journal-article","created":{"date-parts":[[2023,9,27]],"date-time":"2023-09-27T03:04:18Z","timestamp":1695783858000},"page":"1870","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Genomic Signatures of Local Adaptation under High Gene Flow in Lumpfish\u2014Implications for Broodstock Provenance Sourcing and Larval Production"],"prefix":"10.3390","volume":"14","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9372-4360","authenticated-orcid":false,"given":"Simo Njabulo","family":"Maduna","sequence":"first","affiliation":[{"name":"Department of Ecosystems in the Barents Region, Svanhovd Research Station, Norwegian Institute of Bioeconomy Research, 9925 Svanvik, Norway"}]},{"given":"\u00d3l\u00f6f D\u00f3ra Bartels","family":"J\u00f3nsd\u00f3ttir","sequence":"additional","affiliation":[{"name":"Akvaplan-Niva Iceland Office, Akralind 6, 201 K\u00f3pavogur, Iceland"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0077-8077","authenticated-orcid":false,"given":"Albert Kjartan Dagbjartarson","family":"Imsland","sequence":"additional","affiliation":[{"name":"Akvaplan-Niva Iceland Office, Akralind 6, 201 K\u00f3pavogur, Iceland"},{"name":"Department of Biological Sciences, High Technology Centre, University of Bergen, 5020 Bergen, Norway"}]},{"given":"Dav\u00ed\u00f0","family":"G\u00edslason","sequence":"additional","affiliation":[{"name":"Mat\u00eds, V\u00ednlandslei\u00f0 12, 113 Reykjav\u00edk, Iceland"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9675-440X","authenticated-orcid":false,"given":"Patrick","family":"Reynolds","sequence":"additional","affiliation":[{"name":"GIFAS AS, Gildesk\u00e5l, 8140 Inndyr, Norway"}]},{"given":"Lauri","family":"Kapari","sequence":"additional","affiliation":[{"name":"Akvaplan-Niva, Framsenteret, 9296 Troms\u00f8, Norway"}]},{"given":"Thor Arne","family":"Hangstad","sequence":"additional","affiliation":[{"name":"Lumarine AS, Stadionveien 21, 4632 Kristiansand, Norway"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-9994-8503","authenticated-orcid":false,"given":"Kristian","family":"Meier","sequence":"additional","affiliation":[{"name":"Ler\u00f8y Aurora, Stortorget 1D, 9008 Troms\u00f8, Norway"}]},{"given":"Snorre B.","family":"Hagen","sequence":"additional","affiliation":[{"name":"Department of Ecosystems in the Barents Region, Svanhovd Research Station, Norwegian Institute of Bioeconomy Research, 9925 Svanvik, Norway"}]}],"member":"1968","published-online":{"date-parts":[[2023,9,26]]},"reference":[{"key":"ref_1","unstructured":"FAO (2022). 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