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producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Mur\u00e7as vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.<\/jats:p>","DOI":"10.3390\/microorganisms11030672","type":"journal-article","created":{"date-parts":[[2023,3,7]],"date-time":"2023-03-07T02:30:45Z","timestamp":1678156245000},"page":"672","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":10,"title":["A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing"],"prefix":"10.3390","volume":"11","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0749-0877","authenticated-orcid":false,"given":"Ana","family":"Cruz-Silva","sequence":"first","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Grapevine Pathogen Systems Lab, BioISI Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6508-1919","authenticated-orcid":false,"given":"Gon\u00e7alo","family":"Laureano","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Grapevine Pathogen Systems Lab, BioISI Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1424-9275","authenticated-orcid":false,"given":"Marcelo","family":"Pereira","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"}]},{"given":"Ricardo","family":"Dias","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Departamento de Biologia Vegetal, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"}]},{"given":"Jos\u00e9 Moreira da","family":"Silva","sequence":"additional","affiliation":[{"name":"Quinta dos Mur\u00e7as, Espor\u00e3o Company, Covelinhas, 5050-011 Peso da R\u00e9gua, Portugal"}]},{"given":"Nuno","family":"Oliveira","sequence":"additional","affiliation":[{"name":"NBI\u2014Natural Business Intelligence, Regia Douro Park, 5000-033 Vila Real, Portugal"}]},{"given":"Catarina","family":"Gouveia","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Grapevine Pathogen Systems Lab, BioISI Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3100-463X","authenticated-orcid":false,"given":"Cristina","family":"Cruz","sequence":"additional","affiliation":[{"name":"Departamento de Biologia Vegetal, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"},{"name":"cE3c\u2014Center for Ecology, Evolution and Environmental Changes & CHANGE\u2014Global Change and Sustainability Institute, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0365-6916","authenticated-orcid":false,"given":"Margarida","family":"Gama-Carvalho","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Departamento de Qu\u00edmica e Bioqu\u00edmica, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"}]},{"given":"Fiammetta","family":"Alagna","sequence":"additional","affiliation":[{"name":"Energy Technologies and Renewable Sources Department, National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, 75026 Rotondella, MT, Italy"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1914-7435","authenticated-orcid":false,"given":"Bernardo","family":"Duarte","sequence":"additional","affiliation":[{"name":"Departamento de Biologia Vegetal, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"},{"name":"MARE\u2014Marine and Environmental Sciences Centre & ARNET\u2014Aquatic Research Infrastructure Network Associate Laboratory, Faculty of Sciences of the University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8156-7700","authenticated-orcid":false,"given":"Andreia","family":"Figueiredo","sequence":"additional","affiliation":[{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Grapevine Pathogen Systems Lab, BioISI Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749-016 Lisboa, Portugal"},{"name":"Departamento de Biologia Vegetal, Faculdade de Ci\u00eancias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal"}]}],"member":"1968","published-online":{"date-parts":[[2023,3,6]]},"reference":[{"key":"ref_1","unstructured":"OIV (2022). 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