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Living in the city: catalyzing spaces for learning, creation, and action towards climate change","award":["UIDB\/0622\/2020"],"award-info":[{"award-number":["UIDB\/0622\/2020"]}]},{"name":"HAC4CG\u2014Heritage, Art, Creation for Climate Change\u2014project. Living in the city: catalyzing spaces for learning, creation, and action towards climate change","award":["UIDP\/0622\/2020"],"award-info":[{"award-number":["UIDP\/0622\/2020"]}]},{"name":"HAC4CG\u2014Heritage, Art, Creation for Climate Change\u2014project. Living in the city: catalyzing spaces for learning, creation, and action towards climate change","award":["UIDB\/50016\/2020"],"award-info":[{"award-number":["UIDB\/50016\/2020"]}]},{"name":"\u201cPROJETOS ESTRUTURADOS DE I&amp;D&amp;I\u201d HORIZONTE EUROPA and FCT","award":["NORTE-45-2020-75"],"award-info":[{"award-number":["NORTE-45-2020-75"]}]},{"name":"\u201cPROJETOS ESTRUTURADOS DE I&amp;D&amp;I\u201d HORIZONTE EUROPA and FCT","award":["UIDB\/0622\/2020"],"award-info":[{"award-number":["UIDB\/0622\/2020"]}]},{"name":"\u201cPROJETOS ESTRUTURADOS DE I&amp;D&amp;I\u201d HORIZONTE EUROPA and FCT","award":["UIDP\/0622\/2020"],"award-info":[{"award-number":["UIDP\/0622\/2020"]}]},{"name":"\u201cPROJETOS ESTRUTURADOS DE I&amp;D&amp;I\u201d HORIZONTE EUROPA and FCT","award":["UIDB\/50016\/2020"],"award-info":[{"award-number":["UIDB\/50016\/2020"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Sustainability"],"abstract":"<jats:p>This review aims to explore the literature to assess the potential of artificial intelligence (AI) in environmental monitoring for predicting microbiome dynamics. Recognizing the significance of comprehending microorganism diversity, composition, and ecologically sustainable impact, the review emphasizes the importance of studying how microbiomes respond to environmental changes to better grasp ecosystem dynamics. This bibliographic search examines how AI (Machine Learning and Deep Learning) approaches are employed to predict changes in microbial diversity and community composition in response to environmental and climate variables, as well as how shifts in the microbiome can, in turn, influence the environment. Our research identified a final sample of 50 papers that highlighted a prevailing concern for aquatic and terrestrial environments, particularly regarding soil health, productivity, and water contamination, and the use of specific microbial markers for detection rather than shotgun metagenomics. The integration of AI in environmental microbiome monitoring directly supports key sustainability goals through optimized resource management, enhanced bioremediation approaches, and early detection of ecosystem disturbances. This study investigates the challenges associated with interpreting the outputs of these algorithms and emphasizes the need for a deeper understanding of microbial physiology and ecological contexts. The study highlights the advantages and disadvantages of different AI methods for predicting environmental microbiomes through a critical review of relevant research publications. Furthermore, it outlines future directions, including exploring uncharted territories and enhancing model interpretability.<\/jats:p>","DOI":"10.3390\/su17167209","type":"journal-article","created":{"date-parts":[[2025,8,11]],"date-time":"2025-08-11T09:59:13Z","timestamp":1754906353000},"page":"7209","update-policy":"https:\/\/doi.org\/10.3390\/mdpi_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Unraveling the Microbiome\u2013Environmental Change Nexus to Contribute to a More Sustainable World: A Comprehensive Review of Artificial Intelligence Approaches"],"prefix":"10.3390","volume":"17","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9749-9674","authenticated-orcid":false,"given":"Maria In\u00eas","family":"Barbosa","sequence":"first","affiliation":[{"name":"CBQF\u2014Centro de Biotecnologia e Qu\u00edmica Fina, Escola Superior de Biotecnologia, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6545-8069","authenticated-orcid":false,"given":"Gabriel","family":"Silva","sequence":"additional","affiliation":[{"name":"CBQF\u2014Centro de Biotecnologia e Qu\u00edmica Fina, Escola Superior de Biotecnologia, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"},{"name":"CITAR\u2014Centro de Investiga\u00e7\u00e3o em Ci\u00eancia e Tecnologia das Artes, Escola das Artes, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8236-2563","authenticated-orcid":false,"given":"Pedro","family":"Ribeiro","sequence":"additional","affiliation":[{"name":"CBQF\u2014Centro de Biotecnologia e Qu\u00edmica Fina, Escola Superior de Biotecnologia, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0620-080X","authenticated-orcid":false,"given":"Eduarda","family":"Vieira","sequence":"additional","affiliation":[{"name":"CITAR\u2014Centro de Investiga\u00e7\u00e3o em Ci\u00eancia e Tecnologia das Artes, Escola das Artes, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2953-0585","authenticated-orcid":false,"given":"Andr\u00e9","family":"Perrotta","sequence":"additional","affiliation":[{"name":"Centre for Informatics and Systems of the University of Coimbra (CISUC), 3030-290 Coimbra, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0004-851X","authenticated-orcid":false,"given":"Patr\u00edcia","family":"Moreira","sequence":"additional","affiliation":[{"name":"CITAR\u2014Centro de Investiga\u00e7\u00e3o em Ci\u00eancia e Tecnologia das Artes, Escola das Artes, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5381-6615","authenticated-orcid":false,"given":"Pedro Miguel","family":"Rodrigues","sequence":"additional","affiliation":[{"name":"CBQF\u2014Centro de Biotecnologia e Qu\u00edmica Fina, Escola Superior de Biotecnologia, Universidade Cat\u00f3lica Portuguesa, 4169-005 Porto, Portugal"}]}],"member":"1968","published-online":{"date-parts":[[2025,8,9]]},"reference":[{"key":"ref_1","doi-asserted-by":"crossref","unstructured":"Song, D., Huo, T., Zhang, Z., Cheng, L., Wang, L., Ming, K., Liu, H., Li, M., and Du, X. 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