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We previously revealed that Min pigs, a native Chinese breed, are more resistant to dextran sulfate sodium (DSS)-induced colitis than commercial Yorkshire pigs. Characterizing the microbiota in Min pigs would allow identification of the core microbes that confer colitis resistance. By analyzing the microbiota linked to the disease course in Min and Yorkshire pigs, we observed that\n                    <jats:italic>Bacillus<\/jats:italic>\n                    spp. were enriched in Min pigs and positively correlated with pathogen resistance. Using targeted screening, we identified and validated\n                    <jats:italic>Bacillus siamensis<\/jats:italic>\n                    MZ16 from Min pigs as a bacterial species with biofilm formation ability, superior salt and pH tolerance, and antimicrobial characteristics. Subsequently, we administered\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 to conventional or microbiota-deficient BALB\/c mice with DSS-induced colitis to assess its efficacy in alleviating colitis.\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 partially counteracted DSS-induced colitis in conventional mice, but it did not mitigate DSS-induced colitis in microbiota-deficient mice. Further analysis revealed that\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 administration improved intestinal ecology and integrity and immunological barrier function in mice. Compared to the DSS-treated mice, mice preadministered\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 exhibited improved relative abundance of potentially beneficial microbes (\n                    <jats:italic>Lactobacillus<\/jats:italic>\n                    ,\n                    <jats:italic>Bacillus<\/jats:italic>\n                    ,\n                    <jats:italic>Christensenellaceae R7<\/jats:italic>\n                    ,\n                    <jats:italic>Ruminococcus<\/jats:italic>\n                    ,\n                    <jats:italic>Clostridium<\/jats:italic>\n                    , and\n                    <jats:italic>Eubacterium<\/jats:italic>\n                    ), reduced relative abundance of pathogenic microbes (\n                    <jats:italic>Escherichia-Shigella<\/jats:italic>\n                    ), and maintained colonic OCLN and ZO-1 levels and IgA and SIgA levels. Furthermore,\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 reduced proinflammatory cytokine levels by reversing NF-\u03baB and MAPK pathway activation in the DSS group. Overall,\n                    <jats:italic>B. siamensis<\/jats:italic>\n                    MZ16 from Min pigs had beneficial effects on a colitis mouse model by enhancing intestinal barrier functions and reducing inflammation in a gut microbiota-dependent manner.\n                  <\/jats:p>","DOI":"10.34133\/research.0415","type":"journal-article","created":{"date-parts":[[2024,5,29]],"date-time":"2024-05-29T12:11:34Z","timestamp":1716984694000},"update-policy":"https:\/\/doi.org\/10.34133\/aaas_crossmark_01","source":"Crossref","is-referenced-by-count":53,"title":["<i>Bacillus siamensis<\/i>\n                    Targeted Screening from Highly Colitis-Resistant Pigs Can Alleviate Ulcerative Colitis in Mice"],"prefix":"10.34133","volume":"7","author":[{"given":"Xiuyu","family":"Fang","sequence":"first","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haiyang","family":"Liu","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yongqing","family":"Du","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lin","family":"Jiang","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Feng","family":"Gao","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhengyi","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zihan","family":"Chi","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8560-4564","authenticated-orcid":true,"given":"Baoming","family":"Shi","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rNortheast Agricultural University, Harbin 150030, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xuan","family":"Zhao","sequence":"additional","affiliation":[{"name":"College of Animal Science and Technology, \rSouthwest University, Chongqing 400715, People\u2019s Republic of China."}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"221","published-online":{"date-parts":[[2024,7,16]]},"reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-021-01390-x"},{"issue":"12","key":"e_1_3_4_3_2","doi-asserted-by":"crossref","first-page":"720","DOI":"10.1038\/nrgastro.2015.150","article-title":"The global burden of IBD: From 2015 to 2025","volume":"12","author":"Kaplan GG","year":"2015","unstructured":"Kaplan GG. 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Bergey\u2019s manual of systematic bacteriology: Volume 4: The Bacteroidetes Spirochaetes Tenericutes (Mollicutes) Acidobacteria Fibrobacteres Fusobacteria Dictyoglomi Gemmatimonadetes Lentisphaerae Verrucomicrobia Chlamydiae and Planctomycetes. New York (NY): Springer; 2011.","DOI":"10.1007\/978-0-387-68572-4"},{"key":"e_1_3_4_103_2","doi-asserted-by":"crossref","unstructured":"Nightingale CH Ambrose PG Drusano GL Murakawa T. Antimicrobial pharmacodynamics in theory and clinical practice. Boca Raton (FL): CRC Press; 2007.","DOI":"10.3109\/9781420017137"},{"key":"e_1_3_4_104_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1219"},{"issue":"1","key":"e_1_3_4_105_2","doi-asserted-by":"crossref","DOI":"10.1002\/imt2.5","article-title":"ImageGP: An easy-to-use data visualization web server for scientific researchers","volume":"1","author":"Chen T","year":"2022","unstructured":"Chen T, Liu Y-X, Huang L. 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