{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T15:46:30Z","timestamp":1792683990127,"version":"4.5.0"},"reference-count":10,"publisher":"MyJove Corporation","issue":"107","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JoVE"],"DOI":"10.3791\/53460","type":"journal-article","created":{"date-parts":[[2016,1,13]],"date-time":"2016-01-13T19:00:11Z","timestamp":1452711611000},"source":"Crossref","is-referenced-by-count":0,"title":["Gene Expression Profiling of Infecting Microbes Using a Digital Bar-coding Platform"],"prefix":"10.3791","author":[{"given":"Wenjie","family":"Xu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Norma V.","family":"Solis","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Scott G.","family":"Filler","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aaron P.","family":"Mitchell","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"2098","published-online":{"date-parts":[[2016,1,13]]},"reference":[{"issue":"1","key":"ref1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1574-6968.2010.01961.x","type":"journal-article","article-title":"The host-infecting fungal transcriptome","volume":"307","author":"Cairns","year":"2010","unstructured":"Cairns, T., Minuzzi, F., Bignell, E. The host-infecting fungal transcriptome. FEMS Microbiol Lett. 307 (1), 1-11, (2010).","journal-title":"FEMS Microbiol Lett"},{"issue":"9","key":"ref2","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1038\/nrmicro2852","type":"journal-article","article-title":"Dual RNA-seq of pathogen and host","volume":"10","author":"Westermann","year":"2012","unstructured":"Westermann, A.J., Gorski, S.A., Vogel, J. Dual RNA-seq of pathogen and host.Nat Rev Microbiol. 10 (9), 618-30, (2012).","journal-title":"Nat Rev Microbiol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.mib.2014.11.011","type":"journal-article","article-title":"Quantitative bacterial transcriptomics with RNA-seq","volume":"23C","author":"Creecy","year":"2015","unstructured":"Creecy, J.P., Conway, T. Quantitative bacterial transcriptomics with RNA-seq. Curr Opin Microbiol. 23C, 133-140, (2015).","journal-title":"Curr Opin Microbiol"},{"issue":"3","key":"ref4","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1038\/nbt1385","type":"journal-article","article-title":"Direct multiplexed measurement of gene expression with color-coded probe pairs","volume":"26","author":"Geiss","year":"2008","unstructured":"Geiss, G.K. et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol. 26 (3), 317-25 (2008).","journal-title":"Nat Biotechnol"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1186\/1756-0500-2-80","type":"journal-article","article-title":"Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter Assay System","volume":"2","author":"Malkov","year":"2009","unstructured":"Malkov, V.A. et al. Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter Assay System. BMC Res Notes. 2, 80, (2009).","journal-title":"BMC Res Notes"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"e1002076","DOI":"10.1371\/journal.pbio.1002076","type":"journal-article","article-title":"Activation and Alliance of Regulatory Pathways in C. albicans during Mammalian Infection","volume":"13","author":"Xu","year":"2015","unstructured":"Xu, W. et al. Activation and Alliance of Regulatory Pathways in C. albicans during Mammalian Infection. PLoS Biology., 13, e1002076, (2015).","journal-title":"PLoS Biology"},{"issue":"4","key":"ref7","doi-asserted-by":"crossref","first-page":"673","DOI":"10.1128\/MCB.01359-13","type":"journal-article","article-title":"The Cryptococcus neoformans Rim101 Transcription Factor Directly Regulates Genes Required for Adaptation to the Host","volume":"34","author":"O'Meara","year":"2014","unstructured":"O'Meara, T.R. et al. The Cryptococcus neoformans Rim101 Transcription Factor Directly Regulates Genes Required for Adaptation to the Host. Mol Cell Biol. 34 (4), 673-84, (2014).","journal-title":"Mol Cell Biol"},{"issue":"9","key":"ref8","doi-asserted-by":"crossref","first-page":"1529","DOI":"10.1093\/infdis\/jit335","type":"journal-article","article-title":"Profiling of Candida albicans Gene Expression During Intra-Abdominal Candidiasis Identifies Biologic Processes Involved in Pathogenesis","volume":"208","author":"Cheng","year":"2013","unstructured":"Cheng, S. et al. Profiling of Candida albicans Gene Expression During Intra-Abdominal Candidiasis Identifies Biologic Processes Involved in Pathogenesis. J Infect Dis. 208, 1529-1537, (2013).","journal-title":"J Infect Dis"},{"issue":"7","key":"ref9","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1128\/EC.00103-12","type":"journal-article","article-title":"Divergent Targets of Candida albicans Biofilm Regulator Bcr1 in Vitro and In Vivo","volume":"11","author":"Fanning","year":"2012","unstructured":"Fanning, S. et al. Divergent Targets of Candida albicans Biofilm Regulator Bcr1 in Vitro and In Vivo. Eukaryot Cell. 11, 896-904, (2012).","journal-title":"Eukaryot Cell"},{"issue":"2","key":"ref10","doi-asserted-by":"crossref","first-page":"374","DOI":"10.2144\/03342mt01","type":"journal-article","article-title":"TM4: a free, open-source system for microarray data management and analysis","volume":"34","author":"Saeed","year":"2003","unstructured":"Saeed, A.I. et al. TM4: a free, open-source system for microarray data management and analysis. Biotechniques. 34 (2), 374-8 (2003).","journal-title":"Biotechniques"}],"container-title":["Journal of Visualized Experiments"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/www.jove.com\/video\/53460\/gene-expression-profiling-infecting-microbes-using-digital-bar-coding","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T15:26:33Z","timestamp":1792682793000},"score":1,"resource":{"primary":{"URL":"https:\/\/app.jove.com\/t\/53460"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,1,13]]},"references-count":10,"journal-issue":{"issue":"107","published-online":{"date-parts":[[2016]]}},"URL":"https:\/\/doi.org\/10.3791\/53460","relation":{},"ISSN":["1940-087X"],"issn-type":[{"value":"1940-087X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,1,13]]}}}