{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T09:09:46Z","timestamp":1790240986402,"version":"4.1.0"},"reference-count":35,"publisher":"Pensoft Publishers","license":[{"start":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T00:00:00Z","timestamp":1790208000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BDJ"],"abstract":"<jats:p>Plant taxonomic descriptions are essential for botany, but remain scattered in unstructured texts. Automatic trait extraction is difficult due to linguistic variation, specialised terminology and the need for large, structured datasets.<\/jats:p>\n                  <jats:p>\n                    <jats:bold>Methods<\/jats:bold>\n                    : We developed WordGen, an algorithm for species name recognition tolerant to OCR and typographical errors, using curated botanical dictionaries to reliably identify species sections in noisy and web-scraped texts.\n                  <\/jats:p>\n                  <jats:p>\n                    <jats:bold>Results<\/jats:bold>\n                    : We created a 345,000 species file dataset with natural language descriptions of global plant species from monographs, Wikipedia and databases. It achieved over 99% coverage and high recall on New Caledonia and Cameroon Floras datasets, enabling advanced AI-based plant taxonomy analysis.\n                  <\/jats:p>","DOI":"10.3897\/bdj.14.e191990","type":"journal-article","created":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T08:50:01Z","timestamp":1790239801000},"source":"Crossref","is-referenced-by-count":0,"title":["Integrating scanned literature and online sources to build a data text collection for plant biodiversity"],"prefix":"10.3897","volume":"14","author":[{"given":"Nicolas","family":"Turenne","sequence":"first","affiliation":[{"name":"INRAE, MathNum, Paris, France"},{"name":"IRD, Sorbonne Universit\u00e9, UMMISCO, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Chenin","sequence":"additional","affiliation":[{"name":"ISYEB, MNHN, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Youcef","family":"Sklab","sequence":"additional","affiliation":[{"name":"IRD, Sorbonne Universit\u00e9, UMMISCO, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Daniel","family":"Zucker","sequence":"additional","affiliation":[{"name":"IRD, Sorbonne Universit\u00e9, UMMISCO, Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"2258","published-online":{"date-parts":[[2026,9,24]]},"reference":[{"key":"191990_B13925554","doi-asserted-by":"publisher","DOI":"10.1186\/1756-0500-2-53"},{"key":"191990_B13925580","doi-asserted-by":"publisher","DOI":"10.1002\/aps3.70000"},{"key":"191990_B13925618","article-title":"Towards a reference plant trait ontology for modeling knowledge of plant traits and phenotypes","author":"Arnaud","year":"2012","journal-title":"KEOD"},{"key":"191990_B13925639","article-title":"A multitask, multilingual, multimodal evaluation of ChatGPT on reasoning, hallucination, and interactivity","author":"Bang","year":"2023","journal-title":"Proceedings of the 13th International Joint Conference on Natural Language Processing and the 3rd Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics"},{"key":"191990_B14274884","doi-asserted-by":"publisher","DOI":"10.3897\/bdj.14.e184830"},{"key":"191990_B13925662","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.2005.14165"},{"key":"191990_B13925675","doi-asserted-by":"publisher","DOI":"10.1093\/pcp\/pcs163"},{"key":"191990_B13925702","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx1152"},{"key":"191990_B13925726","doi-asserted-by":"publisher","DOI":"10.17161\/bi.v5i0.46"},{"key":"191990_B14273940","author":"G.B.I.F.","year":"2021","journal-title":"Darwin Core Archives - How-to Guide, version 2.2"},{"key":"191990_B13925806","doi-asserted-by":"publisher","DOI":"10.1109\/iembs.2009.5333362"},{"key":"191990_B13925825","doi-asserted-by":"publisher","DOI":"10.1186\/s13326-016-0107-8"},{"key":"191990_B13925852","article-title":"OpenCLIP: an open-source reproduction of CLIP","author":"Ilharco"},{"key":"191990_B13925863","doi-asserted-by":"publisher","DOI":"10.1002\/cfg.496"},{"key":"191990_B13925883","doi-asserted-by":"publisher","DOI":"10.1111\/gcb.14904"},{"key":"191990_B13925563","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-211"},{"key":"191990_B13925896","doi-asserted-by":"publisher","DOI":"10.1002\/aps3.70005"},{"key":"191990_B13925928","doi-asserted-by":"publisher","DOI":"10.3897\/tdwgproceedings.1.20529"},{"key":"191990_B13925944","doi-asserted-by":"publisher","DOI":"10.3897\/bdj.3.e5063.suppl16"},{"key":"191990_B13925960","doi-asserted-by":"publisher","DOI":"10.3897\/bdj.6.e21282.figure2"},{"key":"191990_B14388625","doi-asserted-by":"publisher","DOI":"10.5121\/csit.2024.140605"},{"key":"191990_B13925993","article-title":"What can Global Biodiversity Information Facility (GBIF) do for you?","author":"Page"},{"key":"191990_B13926002","doi-asserted-by":"publisher","DOI":"10.1111\/nph.18961"},{"key":"191990_B14192776","article-title":"RO-Crate Metadata Specification 1.1","author":"Sefton","year":"2023","journal-title":"Research Object Crate"},{"key":"191990_B13928287","doi-asserted-by":"crossref","DOI":"10.1109\/ICDAR.2007.4376991","article-title":"An overview of the Tesseract OCR engine","author":"Smith","year":"2007","journal-title":"Ninth International Conference on Document Analysis and Recognition (ICDAR 2007)"},{"key":"191990_B13928301","article-title":"Tesseract Open Source OCR Engine (Version current at time of use)","author":"Tesseract-OCR-Project"},{"key":"191990_B13926027","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1504.06078"},{"key":"191990_B13926047","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1504.06078"},{"key":"191990_B13926263","doi-asserted-by":"crossref","DOI":"10.51926\/ISTE.9781784051075","author":"Turenne","year":"2016","journal-title":"Analyse de donn\u00e9es textuelles sous R ."},{"key":"191990_B14198739","article-title":"An Agentic Framework Using Rules and LLMs for Embedding and Annotating Descriptive Document Layouts: A Plant Science Use Case","author":"Turenne","year":"2026"},{"key":"191990_B13926085","doi-asserted-by":"publisher","DOI":"10.1093\/database\/bas040"},{"key":"191990_B13925572","article-title":"WCVP. World Checklist of Vascular Plants, version 11 (January 2024). Facilitated by the Royal Botanic Gardens, Kew. https:\/\/wcvp.science.kew.org\/. Accessed on: 2025-7-07.","author":"WCVP-KEW"},{"key":"191990_B13926115","doi-asserted-by":"publisher","DOI":"10.1111\/jbi.13623"},{"key":"191990_B14194876","doi-asserted-by":"publisher","DOI":"10.1038\/s41597-024-03368-z"},{"key":"191990_B13926124","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.2401.01600"}],"container-title":["Biodiversity Data Journal"],"original-title":[],"link":[{"URL":"https:\/\/bdj.pensoft.net\/article\/191990\/download\/pdf\/","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/bdj.pensoft.net\/article\/191990\/download\/xml\/","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/bdj.pensoft.net\/article_preview.php?id=191990&skip_redirect=1","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T08:50:05Z","timestamp":1790239805000},"score":1,"resource":{"primary":{"URL":"https:\/\/bdj.pensoft.net\/article\/191990\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,24]]},"references-count":35,"URL":"https:\/\/doi.org\/10.3897\/bdj.14.e191990","relation":{},"ISSN":["1314-2828","1314-2836"],"issn-type":[{"value":"1314-2828","type":"electronic"},{"value":"1314-2836","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9,24]]},"article-number":"e191990"}}