{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"ARPHA Preprints"}],"indexed":{"date-parts":[[2025,4,16]],"date-time":"2025-04-16T04:19:13Z","timestamp":1744777153300,"version":"3.40.4"},"posted":{"date-parts":[[2025,4,15]]},"group-title":"Research Ideas and Outcomes","reference-count":0,"publisher":"Pensoft Publishers","license":[{"start":{"date-parts":[[2025,4,15]],"date-time":"2025-04-15T00:00:00Z","timestamp":1744675200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2025,4,15]]},"abstract":"<jats:p>The reference genome of the False ringlet (<jats:italic>Coenonympha oedippus<\/jats:italic>) will serve as a valuable resource for uncovering the genetic mechanism underlying the species&amp;prime; adaptability to two ecologically distinct habitats. Through this genome we might be able to determine whether (i) each ecotype is monophyletic, indicating that the ecological divergence represents an early stage of speciation, (ii) the ecotypes have evolved through divergent evolution of habitat preference, or (iii) the differences between ecotypes are solely due to phenotypic plasticity or epigenetic variation. This reference genome is also a prerequisite for the planning, design, and implementation of conservation measures for this endangered species, taking into account its intraspecific diversity. Furthermore, it holds broader implications for population genomic studies of the species-rich genus Coenonympha, which includes some of the most endangered butterfly taxa in Europe. The complete genome sequence was assembled into 30 contiguous chromosomal pseudomolecules (sex chromosomes included). This chromosome-level assembly encompasses 0.39 Gb, composed of 385 contigs and 62 scaffolds, with contig and scaffold N50 values of 2.8 Mb and 14.2 Mb, respectively.<\/jats:p>","DOI":"10.3897\/arphapreprints.e155925","type":"posted-content","created":{"date-parts":[[2025,4,15]],"date-time":"2025-04-15T08:45:21Z","timestamp":1744706721000},"source":"Crossref","is-referenced-by-count":0,"title":["ERGA-BGE genome of Coenonympha oedippus: an IUCN endangered European butterfly species occurring in two ecotypes"],"prefix":"10.3897","author":[{"given":"Tatjana","family":"\u010celik","sequence":"first","affiliation":[{"name":"ZRC SAZU, Jovan Had\u017ei Institute of Biology, Novi trg 2, SI-1000, Ljubljana, Slovenia"}]},{"given":"Tja\u0161a","family":"Lokov\u0161ek","sequence":"additional","affiliation":[{"name":"ZRC SAZU, Jovan Had\u017ei Institute of Biology, Novi trg 2, SI-1000, Ljubljana, Slovenia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0714-5301","authenticated-orcid":true,"given":"Elena","family":"Bu\u017ean","sequence":"additional","affiliation":[{"name":"Faculty of Environmental Protection, Trg mladosti 7, 3320, Velenje, Slovenia"},{"name":"University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagolja\u0161ka 8, SI-6000, Koper, Slovenia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1284-3115","authenticated-orcid":true,"given":"Astrid","family":"B\u00f6hne","sequence":"additional","affiliation":[{"name":"Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Adenauerallee 127, 53113, Bonn, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1374-4474","authenticated-orcid":true,"given":"Rita","family":"Monteiro","sequence":"additional","affiliation":[{"name":"Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Adenauerallee 127, 53113, Bonn, Germany"}]},{"given":"Rosa","family":"Fern\u00e1ndez","sequence":"additional","affiliation":[{"name":"Metazoa Phylogenomics Lab, Institute for Evolutionary Biology (CSIC-UPF). Passeig mar\u00edtim de la Barceloneta 37-49. 08003, Barcelona, Spain"}]},{"given":"Nuria","family":"Escudero","sequence":"additional","affiliation":[{"name":"Metazoa Phylogenomics Lab, Institute for Evolutionary Biology (CSIC-UPF). Passeig mar\u00edtim de la Barceloneta 37-49. 08003, Barcelona, Spain"}]},{"given":"Marta","family":"Gut","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), 08028, Barcelona, Spain"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8631-8778","authenticated-orcid":true,"given":"Laura","family":"Aguilera","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), Barcelona, Spain"}]},{"given":"Francisco","family":"C\u00e2mara Ferreira","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), 08028, Barcelona, Spain"}]},{"given":"Fernando","family":"Cruz","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), 08028, Barcelona, Spain"}]},{"given":"J\u00e8ssica","family":"G\u00f3mez-Garrido","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), 08028 Barcelona, Barcelona, Spain"}]},{"given":"Tyler S","family":"Alioto","sequence":"additional","affiliation":[{"name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain"},{"name":"Universitat de Barcelona (UB), 08028, Barcelona, Spain"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8843-3596","authenticated-orcid":true,"given":"Leanne","family":"Haggerty","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6718-0315","authenticated-orcid":true,"given":"Swati","family":"Sinha","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom"}]},{"given":"Fergal","family":"Martin","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom"}]},{"given":"Chiara","family":"Bortoluzzi","sequence":"additional","affiliation":[{"name":"University of Florence, Department of Biology, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Florence, Italy"},{"name":"Department of Aquatic Ecology, Eawag, \u00dcberlandstrasse 133, 8600, D\u00fcbendorf, Switzerland"},{"name":"SIB Swiss Institute of Bioinformatics, Environmental Bioinformatics group, Amphip\u00f4le, Quartier UNIL-Sorge, 1015, Lausanne, Switzerland"}]}],"member":"2258","container-title":[],"original-title":[],"link":[{"URL":"https:\/\/preprints.arphahub.com\/article\/155925\/download\/pdf\/","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,15]],"date-time":"2025-04-15T08:45:21Z","timestamp":1744706721000},"score":1,"resource":{"primary":{"URL":"https:\/\/preprints.arphahub.com\/article\/155925\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,4,15]]},"references-count":0,"URL":"https:\/\/doi.org\/10.3897\/arphapreprints.e155925","relation":{},"subject":[],"published":{"date-parts":[[2025,4,15]]},"subtype":"preprint"}}