{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,12]],"date-time":"2026-09-12T06:03:52Z","timestamp":1789193032157,"version":"build-2803163510"},"reference-count":49,"publisher":"Springer Science and Business Media LLC","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Stand. Genomic Sci."],"DOI":"10.4056\/sigs.3687314","type":"journal-article","created":{"date-parts":[[2013,6,20]],"date-time":"2013-06-20T17:28:49Z","timestamp":1371749329000},"page":"188-197","source":"Crossref","is-referenced-by-count":29,"title":["Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks"],"prefix":"10.4056","volume":"8","author":[{"given":"Ulisses de P\u00e1dua","family":"Pereira","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anderson","family":"Rodrigues dos Santos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Syed Shah","family":"Hassan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fl\u00e1via Figueira","family":"Aburjaile","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Siomar de Castro","family":"Soares","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rommel Thiago Juc\u00e1","family":"Ramos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adriana Ribeiro","family":"Carneiro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lu\u00eds Carlos","family":"Guimar\u00e3es","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sintia","family":"Silva de Almeida","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carlos Augusto Almeida","family":"Diniz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maria Silvanira","family":"Barbosa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pablo","family":"Gomes de S\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amjad","family":"Ali","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Syeda Marriam","family":"Bakhtiar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fernanda Alves","family":"Dorella","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adhemar","family":"Zerlotini","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fl\u00e1vio Marcos Gomes","family":"Ara\u00fajo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura Rabelo","family":"Leite","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guilherme","family":"Oliveira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anderson","family":"Miyoshi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Artur","family":"Silva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vasco","family":"Azevedo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Henrique C\u00e9sar Pereira","family":"Figueiredo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2013,5,25]]},"reference":[{"key":"key20130620132756184_r1","doi-asserted-by":"crossref","first-page":"201","DOI":"10.2217\/17460913.4.2.201","article-title":"Understanding the regulation of Group B Streptococcal virulence factors.","volume":"4","author":"Rajagopal","year":"2009","journal-title":"Future Microbiol"},{"key":"key20130620132756184_r2","doi-asserted-by":"crossref","first-page":"1263","DOI":"10.1016\/j.meegid.2011.04.019","article-title":"Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae.","volume":"11","author":"Richards","year":"2011","journal-title":"Infect Genet Evol"},{"key":"key20130620132756184_r3","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1046\/j.1365-2761.2002.00392.x","article-title":"Characterization of \u03b2-haemolytic Group B Streptococcus agalactiae in cultured seabream, Sparus auratus L., and wild mullet, Liza klunzingeri (Day), in Kuwait.","volume":"25","author":"Evans","year":"2002","journal-title":"J Fish Dis"},{"key":"key20130620132756184_r4","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1016\/j.vetmic.2008.10.016","article-title":"Aspects of the natural history and virulence of S. agalactiae infection in Nile tilapia.","volume":"136","author":"Mian","year":"2009","journal-title":"Vet Microbiol"},{"key":"key20130620132756184_r5","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1111\/j.1365-2761.2004.00538.x","article-title":"Isolation of Streptococcus agalactiae from cultured silver pomfret, Pampus argenteus (Euphrasen), in Kuwait.","volume":"27","author":"Duremdez","year":"2004","journal-title":"J Fish Dis"},{"key":"key20130620132756184_r6","doi-asserted-by":"crossref","first-page":"13950","DOI":"10.1073\/pnas.0506758102","article-title":"Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial \u201cpan-genome.\u201d.","volume":"102","author":"Tettelin","year":"2005","journal-title":"Proc Natl Acad Sci USA"},{"key":"key20130620132756184_r7","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1128\/CMR.11.3.497","article-title":"Epidemiology of group B streptococcal disease in the United States: shifting paradigms.","volume":"11","author":"Schuchat","year":"1998","journal-title":"Clin Microbiol Rev"},{"key":"key20130620132756184_r8","doi-asserted-by":"crossref","first-page":"441","DOI":"10.1084\/jem.59.4.441","article-title":"A serological differentiation of specifc types of bovine hemolytic streptococci (GROUP B).","volume":"59","author":"Lancefield","year":"1934","journal-title":"J Exp Med"},{"key":"key20130620132756184_r9","doi-asserted-by":"crossref","first-page":"2929","DOI":"10.1128\/JCM.00117-07","article-title":"Serotype IX, a Proposed New Streptococcus agalactiae Serotype.","volume":"45","author":"Slotved","year":"2007","journal-title":"J Clin Microbiol"},{"key":"key20130620132756184_r10","doi-asserted-by":"crossref","first-page":"4161","DOI":"10.1128\/JCM.01374-09","article-title":"Evaluation of three commercial broth media for pigment detection and identification of a group B Streptococcus (Streptococcus agalactiae).","volume":"47","author":"Carvalho","year":"2009","journal-title":"J Clin Microbiol"},{"key":"key20130620132756184_r11","doi-asserted-by":"crossref","first-page":"1227","DOI":"10.1016\/j.micinf.2005.11.010","article-title":"Genomic diversity and evolution within the species Streptococcus agalactiae.","volume":"8","author":"Brochet","year":"2006","journal-title":"Microbes Infect"},{"key":"key20130620132756184_r12","doi-asserted-by":"crossref","first-page":"2161","DOI":"10.1128\/JCM.42.5.2161-2167.2004","article-title":"Hyperinvasive Neonatal Group B Streptococcus Has Arisen from a Bovine Ancestor.","volume":"42","author":"Bisharat","year":"2004","journal-title":"J Clin Microbiol"},{"key":"key20130620132756184_r13","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1128\/JB.92.2.512-512.1966","article-title":"Streptococcal Fish Pathogen.","volume":"92","author":"Robinson","year":"1966","journal-title":"J Bacteriol"},{"key":"key20130620132756184_r14","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.vetmic.2009.07.025","article-title":"Genotyping of Streptococcus agalactiae strains isolated from fish, human and cattle and their virulence potential in Nile tilapia.","volume":"140","author":"Pereira","year":"2010","journal-title":"Vet Microbiol"},{"key":"key20130620132756184_r15","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/nbt1360","article-title":"The minimum information about a genome sequence (MIGS) specification.","volume":"26","author":"Field","year":"2008","journal-title":"Nat Biotechnol"},{"key":"key20130620132756184_r16","doi-asserted-by":"crossref","first-page":"4576","DOI":"10.1073\/pnas.87.12.4576","article-title":"Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.","volume":"87","author":"Woese","year":"1990","journal-title":"Proc Natl Acad Sci USA"},{"key":"key20130620132756184_r17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1099\/00207713-28-1-1","article-title":"Proposals Concerning the Higher Taxa of Bacteria.","volume":"28","author":"Gibbons","year":"1978","journal-title":"Int J Syst Bacteriol"},{"key":"key20130620132756184_r18"},{"key":"key20130620132756184_r19"},{"key":"key20130620132756184_r20","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1099\/ijs.0.022855-0","article-title":"List of new names and new combinations previously effectively, but not validly, published. List no. 132.","volume":"60","author":"Euz\u00e9by","year":"2010","journal-title":"Int J Syst Evol Microbiol"},{"key":"key20130620132756184_r21"},{"key":"key20130620132756184_r22"},{"key":"key20130620132756184_r23","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1099\/00207713-30-1-225","article-title":"Approved Lists of Bacterial Names.","volume":"30","author":"Skerman","year":"1980","journal-title":"Int J Syst Bacteriol"},{"key":"key20130620132756184_r24"},{"key":"key20130620132756184_r25"},{"key":"key20130620132756184_r26"},{"key":"key20130620132756184_r27"},{"key":"key20130620132756184_r28","first-page":"141","article-title":"Opinions 4, 6, 7, 8, 9, 10, 11, 12, 13, 14 Opinion 8.","volume":"4","author":"Judicial Commission","year":"1954","journal-title":"Int Bull Bacteriol Nomencl Taxon"},{"key":"key20130620132756184_r29","first-page":"37","article-title":"Opinion 27: Designation of the neotype strain of Streptococcus agalactiae Lehmann and Neumann.","volume":"13","author":"Judicial Commission","year":"1963","journal-title":"Int Bull Bacteriol Nomencl Taxon"},{"key":"key20130620132756184_r30"},{"key":"key20130620132756184_r31","doi-asserted-by":"crossref","first-page":"1499","DOI":"10.1046\/j.1365-2958.2002.03126.x","article-title":"Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease.","volume":"45","author":"Glaser","year":"2002","journal-title":"Mol Microbiol"},{"key":"key20130620132756184_r32","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1111\/j.1574-695X.2008.00428.x","article-title":"MALDI-TOF mass spectrometry as a tool for differentiation of invasive and noninvasive Streptococcus pyogenes isolates.","volume":"53","author":"Moura","year":"2008","journal-title":"FEMS Immunol Med Microbiol"},{"key":"key20130620132756184_r33","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat Genet"},{"key":"key20130620132756184_r34","doi-asserted-by":"crossref","first-page":"5098","DOI":"10.1128\/IAI.69.8.5098-5106.2001","article-title":"Contribution of Mn-cofactored superoxide dismutase (SodA) to the virulence of Streptococcus agalactiae.","volume":"69","author":"Poyart","year":"2001","journal-title":"Infect Immun"},{"key":"key20130620132756184_r35","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","article-title":"Clustal W and Clustal X version 2.0.","volume":"23","author":"Larkin","year":"2007","journal-title":"Bioinformatics"},{"key":"key20130620132756184_r36","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","article-title":"MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.","volume":"28","author":"Tamura","year":"2011","journal-title":"Mol Biol Evol"},{"key":"key20130620132756184_r37","doi-asserted-by":"crossref","first-page":"D346","DOI":"10.1093\/nar\/gkp848","article-title":"The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.","volume":"38","author":"Liolios","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"key20130620132756184_r38","doi-asserted-by":"crossref","first-page":"1955","DOI":"10.1093\/nar\/19.8.1955","article-title":"A simple method for the isolation of chromosomal DNA from Gram positive or acid-fast bacteria.","volume":"19","author":"Bollet","year":"1991","journal-title":"Nucleic Acids Res"},{"key":"key20130620132756184_r39","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1101\/gr.074492.107","article-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs.","volume":"18","author":"Zerbino","year":"2008","journal-title":"Genome Res"},{"key":"key20130620132756184_r40","doi-asserted-by":"crossref","first-page":"802","DOI":"10.1101\/gr.072033.107","article-title":"De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.","volume":"18","author":"Hernandez","year":"2008","journal-title":"Genome Res"},{"key":"key20130620132756184_r41","doi-asserted-by":"crossref","first-page":"R41","DOI":"10.1186\/gb-2010-11-4-r41","article-title":"Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.","volume":"11","author":"Tsai","year":"2010","journal-title":"Genome Biol"},{"key":"key20130620132756184_r42","unstructured":"G4ALL. http:\/\/g4all.sourceforge.net"},{"key":"key20130620132756184_r43","doi-asserted-by":"crossref","first-page":"996","DOI":"10.6026\/97320630008996","article-title":"Simplifier: a web tool to eliminate redundant NGS contigs.","volume":"8","author":"Ramos","year":"2012","journal-title":"Bioinformation"},{"key":"key20130620132756184_r44","doi-asserted-by":"crossref","first-page":"4636","DOI":"10.1093\/nar\/27.23.4636","article-title":"Improved microbial gene identification with GLIMMER.","volume":"27","author":"Delcher","year":"1999","journal-title":"Nucleic Acids Res"},{"key":"key20130620132756184_r45","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes.","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"key20130620132756184_r46","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1093\/nar\/25.5.0955","article-title":"tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence.","volume":"25","author":"Lowe","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"key20130620132756184_r47","doi-asserted-by":"crossref","first-page":"847","DOI":"10.1093\/bioinformatics\/17.9.847","article-title":"InterProScan -- an integration platform for the signature-recognition methods in InterPro.","volume":"17","author":"Zdobnov","year":"2001","journal-title":"Bioinformatics"},{"key":"key20130620132756184_r48","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","article-title":"Artemis: sequence visualization and annotation.","volume":"16","author":"Rutherford","year":"2000","journal-title":"Bioinformatics"},{"key":"key20130620132756184_r49","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1186\/1471-2164-13-202","article-title":"Comparing thousands of circular genomes using the CGView Comparison Tool.","volume":"13","author":"Grant","year":"2012","journal-title":"BMC Genomics"}],"container-title":["Standards in Genomic Sciences"],"original-title":[],"language":"en","deposited":{"date-parts":[[2024,4,9]],"date-time":"2024-04-09T19:56:45Z","timestamp":1712692605000},"score":1,"resource":{"primary":{"URL":"https:\/\/environmentalmicrobiome.biomedcentral.com\/articles\/10.4056\/sigs.3687314"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,5,25]]},"references-count":49,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2013,5,25]]}},"alternative-id":["10.4056\/sigs.3687314"],"URL":"https:\/\/doi.org\/10.4056\/sigs.3687314","relation":{},"ISSN":["1944-3277"],"issn-type":[{"value":"1944-3277","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,5,25]]}}}