{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T06:39:11Z","timestamp":1792132751233,"version":"4.4.0"},"reference-count":33,"publisher":"Scientific Scholar","issue":"3","content-domain":{"domain":["lww.com","ovid.com"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2019,9]]},"abstract":"<jats:sec>\n            <jats:title>Background &amp; objectives:<\/jats:title>\n            <jats:p>Duchenne muscular dystrophy (DMD) is an X-linked recessive disorder and is caused mainly by deletion, duplication and point mutations in the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene. Diagnosis of DMD has been a challenge as the mutations in the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene are heterogeneous and require more than one diagnostic strategy for the validation of the mutation. This study was planned to evaluate the targeted next-generation sequencing (NGS) as a single platform to detect all types of mutations in the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene, thereby reducing the time and costs compared to conventional sequential testing and also provide precise genetic information for emerging gene therapies.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Methods:<\/jats:title>\n            <jats:p>The study included 20 unrelated families and 22 patients from an Indian population who were screened for DMD based on phenotypes such as scoliosis, toe walking and loss of ambulation. Peripheral blood DNA was isolated and subjected to multiplex ligation-dependent probe amplification (MLPA) and targeted NGS of the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene to identify the nature of the mutation.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Results:<\/jats:title>\n            <jats:p>In the study patients, 77 per cent of large deletion mutations and 23 per cent single-nucleotide variations (SNVs) were identified. Novel mutations were also identified along with reported deletions, point mutations and partial deletions within the exon of the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Interpretation &amp; conclusions:<\/jats:title>\n            <jats:p>Our findings showed the importance of NGS in the routine diagnostic practice in the identification of <jats:italic toggle=\"yes\">DMD<\/jats:italic> mutations over sequential testing. It may be used as a single-point diagnostic strategy irrespective of the mutation type, thereby reducing the turnaround time and cost for multiple diagnostic tests such as MLPA and Sanger sequencing. Though MLPA is a sensitive technique and is the first line of a diagnostic test, the targeted NGS of the <jats:italic toggle=\"yes\">DMD<\/jats:italic> gene may have an advantage of having a single diagnostic test. A study on a larger number of patients is needed to highlight NGS as a single, comprehensive platform for the diagnosis of DMD.<\/jats:p>\n          <\/jats:sec>","DOI":"10.4103\/ijmr.ijmr_290_18","type":"journal-article","created":{"date-parts":[[2019,11,8]],"date-time":"2019-11-08T13:13:21Z","timestamp":1573218801000},"page":"282-289","update-policy":"https:\/\/doi.org\/10.1097\/lww.0000000000001000","source":"Crossref","is-referenced-by-count":14,"title":["Targeted sequencing of the DMD locus"],"prefix":"10.25259","volume":"150","author":[{"given":"Sankaramoorthy","family":"Aravind","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Berty","family":"Ashley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashraf","family":"Mannan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aparna","family":"Ganapathy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Keerthi","family":"Ramesh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aparna","family":"Ramachandran","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Upendra","family":"Nongthomba","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Arun","family":"Shastry","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"10894","reference":[{"key":"R1-11-20241212","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1007\/BF00275183","article-title":"Duchenne muscular dystrophy: Pathogenetic aspects and genetic prevention","volume":"66","author":"Moser","year":"1984","journal-title":"Hum Genet"},{"key":"R2-11-20241212","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/S1474-4422(09)70271-6","article-title":"Diagnosis and management of duchenne muscular dystrophy, part 1: Diagnosis, and pharmacological and psychosocial management","volume":"9","author":"Bushby","year":"2010","journal-title":"Lancet Neurol"},{"key":"R3-11-20241212","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1016\/j.prrv.2006.04.009","article-title":"Scoliosis and the respiratory system","volume":"7","author":"Koumbourlis","year":"2006","journal-title":"Paediatr Respir Rev"},{"key":"R4-11-20241212","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1016\/0092-8674(88)90383-2","article-title":"The complete sequence of dystrophin predicts a rod-shaped cytoskeletal protein","volume":"53","author":"Koenig","year":"1988","journal-title":"Cell"},{"key":"R5-11-20241212","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1016\/0960-8966(94)90081-7","article-title":"Expression and subcellular localization of dystrophin in skeletal, cardiac and smooth muscles during the human development","volume":"4","author":"Chevron","year":"1994","journal-title":"Neuromuscul Disord"},{"key":"R6-11-20241212","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1016\/0888-7543(88)90113-9","article-title":"An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus","volume":"2","author":"Monaco","year":"1988","journal-title":"Genomics"},{"key":"R7-11-20241212","first-page":"498","article-title":"The molecular basis for duchenne versus Becker muscular dystrophy: Correlation of severity with type of deletion","volume":"45","author":"Koenig","year":"1989","journal-title":"Am J Hum Genet"},{"key":"R8-11-20241212","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1002\/mus.20586","article-title":"Entries in the Leiden duchenne muscular dystrophy mutation database: An overview of mutation types and paradoxical cases that confirm the reading-frame rule","volume":"34","author":"Aartsma-Rus","year":"2006","journal-title":"Muscle Nerve"},{"key":"R9-11-20241212","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1136\/jmedgenet-2015-103387","article-title":"The importance of genetic diagnosis for duchenne muscular dystrophy","volume":"53","author":"Aartsma-Rus","year":"2016","journal-title":"J Med Genet"},{"key":"R10-11-20241212","doi-asserted-by":"crossref","first-page":"e57","DOI":"10.1093\/nar\/gnf056","article-title":"Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification","volume":"30","author":"Schouten","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"R11-11-20241212","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1016\/j.clinbiochem.2005.11.019","article-title":"Detecting exon deletions and duplications of the DMD gene using multiplex ligation-dependent probe amplification (MLPA)","volume":"39","author":"Lai","year":"2006","journal-title":"Clin Biochem"},{"key":"R12-11-20241212","doi-asserted-by":"crossref","first-page":"454","DOI":"10.1038\/jhg.2014.54","article-title":"New variants, challenges and pitfalls in DMD genotyping: Implications in diagnosis, prognosis and therapy","volume":"59","author":"Santos","year":"2014","journal-title":"J Hum Genet"},{"key":"R13-11-20241212","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1038\/ejhg.2013.82","article-title":"Targeted next-generation sequencing as a comprehensive test for patients with and female carriers of DMD\/BMD: A multi-population diagnostic study","volume":"22","author":"Wei","year":"2014","journal-title":"Eur J Hum Genet"},{"key":"R14-11-20241212","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1136\/jmedgenet-2011-100133","article-title":"Genetic diagnosis of duchenne and Becker muscular dystrophy using next-generation sequencing technology: Comprehensive mutational search in a single platform","volume":"48","author":"Lim","year":"2011","journal-title":"J Med Genet"},{"key":"R15-11-20241212","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1038\/jhg.2016.4","article-title":"Detection of high frequency of mutations in a breast and\/or ovarian cancer cohort: Implications of embracing a multi-gene panel in molecular diagnosis in India","volume":"61","author":"Mannan","year":"2016","journal-title":"J Hum Genet"},{"key":"R16-11-20241212","first-page":"856","article-title":"Next-generation sequencing library preparation: simultaneous fragmentation and tagging using in vitro transposition","volume":"6","author":"Fraz","year":"2009","journal-title":"Nat Methods"},{"key":"R17-11-20241212","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1038\/gim.2015.30","article-title":"Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology","volume":"17","author":"Richards","year":"2015","journal-title":"Genet Med"},{"key":"R18-11-20241212","first-page":"1036","article-title":"Next-generation sequencing-based method shows increased mutation detection sensitivity in an Indian retinoblastoma cohort","volume":"22","author":"Singh","year":"2016","journal-title":"Mol Vis"},{"key":"R19-11-20241212","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1038\/nrg2958","article-title":"Genome structural variation discovery and genotyping","volume":"12","author":"Alkan","year":"2011","journal-title":"Nat Rev Genet"},{"key":"R20-11-20241212","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1172\/JCI114482","article-title":"Improved diagnosis of duchenne\/Becker muscular dystrophy","volume":"85","author":"Beggs","year":"1990","journal-title":"J Clin Invest"},{"key":"R21-11-20241212","doi-asserted-by":"crossref","first-page":"1013","DOI":"10.1007\/s00438-014-0847-z","article-title":"Whole dystrophin gene analysis by next-generation sequencing: A comprehensive genetic diagnosis of duchenne and Becker muscular dystrophy","volume":"289","author":"Wang","year":"2014","journal-title":"Mol Genet Genomics"},{"key":"R22-11-20241212","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1007\/s10048-004-0204-1","article-title":"MLPA analysis for the detection of deletions, duplications and complex rearrangements in the dystrophin gene: Potential and pitfalls","volume":"6","author":"Janssen","year":"2005","journal-title":"Neurogenetics"},{"key":"R23-11-20241212","doi-asserted-by":"crossref","first-page":"852","DOI":"10.4103\/0028-3886.73744","article-title":"Gene changes in duchenne muscular dystrophy: Comparison of multiplex PCR and multiplex ligation-dependent probe amplification techniques","volume":"58","author":"Kohli","year":"2010","journal-title":"Neurol India"},{"key":"R24-11-20241212","doi-asserted-by":"crossref","first-page":"422","DOI":"10.1016\/j.nmd.2010.04.005","article-title":"Best practice guidelines on molecular diagnostics in duchenne\/Becker muscular dystrophies","volume":"20","author":"Abbs","year":"2010","journal-title":"Neuromuscul Disord"},{"key":"R25-11-20241212","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1177\/0883073808324770","article-title":"Mutation analysis in a population-based cohort of boys with duchenne or Becker muscular dystrophy","volume":"24","author":"Cunniff","year":"2009","journal-title":"J Child Neurol"},{"key":"R26-11-20241212","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1016\/S0969-2126(00)00132-5","article-title":"The structure of the N-terminal actin-binding domain of human dystrophin and how mutations in this domain may cause duchenne or Becker muscular dystrophy","volume":"8","author":"Norwood","year":"2000","journal-title":"Structure"},{"key":"R27-11-20241212","doi-asserted-by":"crossref","first-page":"e0135189","DOI":"10.1371\/journal.pone.0135189","article-title":"DMD mutations in 576 dystrophinopathy families: A step forward in genotype-phenotype correlations","volume":"10","author":"Juan-Mateu","year":"2015","journal-title":"PLoS One"},{"key":"R28-11-20241212","doi-asserted-by":"crossref","first-page":"1100","DOI":"10.1002\/humu.20841","article-title":"Molecular diagnosis of duchenne\/Becker muscular dystrophy: Enhanced detection of dystrophin gene rearrangements by oligonucleotide array-comparative genomic hybridization","volume":"29","author":"del Gaudio","year":"2008","journal-title":"Hum Mutat"},{"key":"R29-11-20241212","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1136\/jmg.32.1.48","article-title":"Deletion patterns of Duchenne and Becker muscular dystrophies in Greece","volume":"32","author":"Florentin","year":"1995","journal-title":"J Med Genet"},{"key":"R30-11-20241212","first-page":"303","article-title":"Use of multiplex ligation-dependent probe amplification (MLPA) for Duchenne muscular dystrophy (DMD) gene mutation analysis","volume":"132","author":"Murugan","year":"2010","journal-title":"Indian J Med Res"},{"key":"R31-11-20241212","doi-asserted-by":"crossref","first-page":"830","DOI":"10.1038\/mt.2011.59","article-title":"Current status of pharmaceutical and genetic therapeutic approaches to treat DMD","volume":"19","author":"Pichavant","year":"2011","journal-title":"Mol Ther"},{"key":"R32-11-20241212","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1038\/nature05756","article-title":"PTC124 targets genetic disorders caused by nonsense mutations","volume":"447","author":"Welch","year":"2007","journal-title":"Nature"},{"key":"R33-11-20241212","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1002\/humu.20918","article-title":"Theoretic applicability of antisense-mediated exon skipping for duchenne muscular dystrophy mutations","volume":"30","author":"Aartsma-Rus","year":"2009","journal-title":"Hum Mutat"}],"container-title":["Indian Journal of Medical Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.lww.com\/10.4103\/ijmr.IJMR_290_18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,7,2]],"date-time":"2025-07-02T23:02:44Z","timestamp":1751497364000},"score":1,"resource":{"primary":{"URL":"https:\/\/ijmr.org.in\/targeted-sequencing-of-the-dmd-locus-a-comprehensive-diagnostic-tool-for-all-mutations\/"}},"subtitle":["A comprehensive diagnostic tool for all mutations"],"short-title":[],"issued":{"date-parts":[[2019,9]]},"references-count":33,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2019]]}},"URL":"https:\/\/doi.org\/10.4103\/ijmr.ijmr_290_18","relation":{},"ISSN":["0971-5916"],"issn-type":[{"value":"0971-5916","type":"print"}],"subject":[],"published":{"date-parts":[[2019,9]]}}}