{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T22:07:05Z","timestamp":1784239625833,"version":"3.55.0"},"reference-count":43,"publisher":"Ovid Technologies (Wolters Kluwer Health)","issue":"1","license":[{"start":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T00:00:00Z","timestamp":1777593600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"content-domain":{"domain":["lww.com","ovid.com"],"crossmark-restriction":true},"short-container-title":[],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Background:<\/jats:title>\n                    <jats:p>\n                      <jats:italic toggle=\"yes\">Eimeria tenella<\/jats:italic>\n                      poses a significant threat to the poultry industry, and understanding the correlation between metabolic changes in cecal tissues and microbial community alterations is crucial for studying parasite-host interactions.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Aims and Objectives:<\/jats:title>\n                    <jats:p>\n                      To investigate the associations among dominant bacterial populations, key functional genes, and altered metabolites in cecal tissues and contents during\n                      <jats:italic toggle=\"yes\">E. tenella<\/jats:italic>\n                      infection.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Materials and Methods:<\/jats:title>\n                    <jats:p>Metagenomic analysis was first performed on cecal contents to identify the dominant bacterial communities, followed by metabolomic analysis of cecal tissues and contents. Correlation analysis was then conducted to evaluate the relationships among microbial communities, functional genes, and differential metabolites.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results:<\/jats:title>\n                    <jats:p>Correlation analysis showed that increased potentially pathogenic genera were generally positively associated with upregulated metabolites and negatively associated with downregulated metabolites, whereas reduced commensal genera showed the opposite trend. Shared KEGG pathways co-enriched by differential metabolites and microbial functional genes were identified, mainly involving amino acid metabolism, transport systems, membrane-associated metabolism, and nucleotide metabolism. The metabolites linked to dominant bacterial communities were primarily enriched in pathways such as amino sugar metabolism, sialic acid metabolism, and glycerophospholipid metabolism. These findings reflected complex metabolic reprogramming and interactions between the host and pathogen, especially in cecal tissue repair, immune regulation, and metabolic competition with the pathogen.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusion:<\/jats:title>\n                    <jats:p>This study provided valuable insights into parasite-host interactions and laid a foundation for understanding the role of bacterial community-associated metabolites in cecal coccidiosis.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.4103\/ijvsm.ijvsm_1_26","type":"journal-article","created":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T21:44:26Z","timestamp":1784238266000},"update-policy":"https:\/\/doi.org\/10.1097\/lww.0000000000001000","source":"Crossref","is-referenced-by-count":0,"title":["Metabolomic and Metagenomic Correlation Reveals the Network Regulatory Mechanism of Cecal Microbiota Structural Changes Induced by Eimeria tenella"],"prefix":"10.4103","volume":"14","author":[{"given":"Bi","family":"Wang","sequence":"first","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Department of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Southwest University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"},{"name":"Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yongmei","family":"Yu","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shihui","family":"Huang","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"},{"name":"Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ye","family":"He","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Chen","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shunping","family":"Dong","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Deyuan","family":"Tang","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"},{"name":"Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhentao","family":"Cheng","sequence":"additional","affiliation":[{"name":"Department of Veterinary, College of Animal Science, Guizhou University, Chongqing, China"},{"name":"Key Laboratory of Animal Diseases and Veterinary Public Health of Guizhou Province (Cultivation), Chongqing, China"},{"name":"Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, Guizhou University, Guiyang, Guizhou Province, Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Liting","family":"Cao","sequence":"additional","affiliation":[{"name":"Department of Traditional Chinese Veterinary Medicine, College of Veterinary Medicine, Southwest University, Chongqing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"276","published-online":{"date-parts":[[2026,5]]},"reference":[{"key":"R1-20260716","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1186\/s13567-020-00837-2","article-title":"Re-calculating the cost of coccidiosis in chickens","volume":"51","author":"Blake","year":"2020","journal-title":"Vet Res"},{"key":"R2-20260716","doi-asserted-by":"crossref","first-page":"2053","DOI":"10.1007\/s00436-018-5875-x","article-title":"Molecular characterization and functional analysis of Eimeria tenella malate dehydrogenase","volume":"117","author":"Chen","year":"2018","journal-title":"Parasitol Res"},{"key":"R3-20260716","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1080\/03079457.2021.1912288","article-title":"Spotlight on avian pathology: Eimeria and the disease coccidiosis","volume":"50","author":"Blake","year":"2021","journal-title":"Avian Pathol"},{"key":"R4-20260716","doi-asserted-by":"crossref","first-page":"1392","DOI":"10.1292\/jvms.18-0219","article-title":"Eimeria tenella oocyst excretion and riboflavin supplement in infected chicken","volume":"80","author":"Jarujareet","year":"2018","journal-title":"J Vet Med Sci"},{"key":"R5-20260716","doi-asserted-by":"crossref","first-page":"e91941","DOI":"10.1371\/journal.pone.0091941","article-title":"Extensive microbial and functional diversity within the chicken cecal microbiome","volume":"9","author":"Sergeant","year":"2014","journal-title":"PLoS One"},{"key":"R6-20260716","doi-asserted-by":"crossref","first-page":"e338","DOI":"10.1038\/emm.2017.20","article-title":"Roles of intestinal epithelial cells in the maintenance of gut homeostasis","volume":"49","author":"Okumura","year":"2017","journal-title":"Exp Mol Med"},{"key":"R7-20260716","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.vetpar.2018.06.005","article-title":"Eimeria tenella infection perturbs the chicken gut microbiota from the onset of oocyst shedding","volume":"258","author":"Huang","year":"2018","journal-title":"Vet Parasitol"},{"key":"R8-20260716","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3382\/ps.0740001","article-title":"Effect of Eimeria tenella infection on Salmonella enteritidis infection in chickens","volume":"74","author":"Qin","year":"1995","journal-title":"Poult Sci"},{"key":"R9-20260716","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1016\/j.vetimm.2007.10.014","article-title":"Coccidia-induced mucogenesis promotes the onset of necrotic enteritis by supporting Clostridium perfringens growth","volume":"122","author":"Collier","year":"2008","journal-title":"Vet Immunol Immunopathol"},{"key":"R10-20260716","doi-asserted-by":"crossref","first-page":"e00772","DOI":"10.1128\/IAI.00772-18","article-title":"Impact of Eimeria tenella coinfection on Campylobacter jejuni colonization of the chicken","volume":"87","author":"Macdonald","year":"2019","journal-title":"Infect Immun"},{"key":"R11-20260716","doi-asserted-by":"crossref","first-page":"106343","DOI":"10.1016\/j.tvjl.2025.106343","article-title":"ChangQing compound relieves Eimeria tenella infection symptoms by modulating intestinal probiotic and pathogenic bacteria balance","volume":"311","author":"Yang","year":"2025","journal-title":"Vet J"},{"key":"R12-20260716","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1080\/03079457.2022.2133681","article-title":"Comparison of the caecal microbial community structure and physiological indicators of healthy and infection Eimeria tenella chickens during peak of oocyst shedding","volume":"52","author":"Wang","year":"2023","journal-title":"Avian Pathol"},{"key":"R13-20260716","doi-asserted-by":"crossref","first-page":"1382160","DOI":"10.3389\/fcimb.2024.1382160","article-title":"Correlation of caecal microbiome endotoxins genes and intestinal immune cells in Eimeria tenella infection based on bioinformatics","volume":"14","author":"Han","year":"2024","journal-title":"Front Cell Infect Microbiol"},{"key":"R14-20260716","doi-asserted-by":"crossref","first-page":"4101","DOI":"10.7150\/thno.35186","article-title":"Integrated microbiome and metabolome analysis reveals a novel interplay between commensal bacteria and metabolites in colorectal cancer","volume":"9","author":"Yang","year":"2019","journal-title":"Theranostics"},{"key":"R15-20260716","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1021\/acsagscitech.1c00214","article-title":"On-site diagnosis of poultry coccidiosis by a miniature mass spectrometer and machine learning","volume":"2","author":"Wang","year":"2022","journal-title":"ACS Agric Sci Technol"},{"key":"R16-20260716","doi-asserted-by":"crossref","first-page":"1301480","DOI":"10.3389\/fmicb.2023.1301480","article-title":"Eimeria infections of plateau pika altered the patterns of temporal alterations in gut bacterial communities","volume":"14","author":"Li","year":"2024","journal-title":"Front Microbiol"},{"key":"R17-20260716","doi-asserted-by":"crossref","first-page":"e5","DOI":"10.1017\/anr.2024.7","article-title":"Multi-omics analysis reveals the dominant intestinal microbial strains and metabolites related to the reproductive performance in pregnant sows","volume":"1","author":"Ye","year":"2024","journal-title":"Anim Nutriomics"},{"key":"R18-20260716","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1038\/s41564-018-0306-4","article-title":"Gut microbiome structure and metabolic activity in inflammatory bowel disease","volume":"4","author":"Franzosa","year":"2018","journal-title":"Nat Microbiol"},{"key":"R19-20260716","doi-asserted-by":"crossref","first-page":"8496","DOI":"10.1021\/acs.jafc.0c03738","article-title":"Coupling 16S rDNA sequencing and untargeted mass spectrometry for milk microbial composition and metabolites from dairy cows with clinical and subclinical mastitis","volume":"68","author":"Wang","year":"2020","journal-title":"J Agric Food Chem"},{"key":"R20-20260716","doi-asserted-by":"crossref","first-page":"110473","DOI":"10.1016\/j.vetpar.2025.110473","article-title":"The GLI3 may be involved in the damage process of Eimeria tenella to chicken cecal tissue","volume":"337","author":"Xiang","year":"2025","journal-title":"Vet Parasitol"},{"key":"R21-20260716","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nature08821","article-title":"A human gut microbial gene catalogue established by metagenomic sequencing","volume":"464","author":"Qin","year":"2010","journal-title":"Nature"},{"key":"R22-20260716","doi-asserted-by":"crossref","first-page":"1691","DOI":"10.1073\/pnas.1120238109","article-title":"In-feed antibiotic effects on the swine intestinal microbiome","volume":"109","author":"Looft","year":"2012","journal-title":"Proc Natl Acad Sci U S A"},{"key":"R23-20260716","first-page":"71","article-title":"Integrated nr database in protein annotation system and its localization","volume":"32","author":"Deng","year":"2006","journal-title":"Comput Eng"},{"key":"R24-20260716","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1016\/j.psj.2019.10.073","article-title":"Effects of Eimeria tenella infection on the barrier damage and microbiota diversity of chicken cecum","volume":"99","author":"Zhou","year":"2020","journal-title":"Poult Sci"},{"key":"R25-20260716","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1186\/s13567-019-0715-2","article-title":"Serum metabolite markers of early Mycoplasma hyopneumoniae infection in pigs","volume":"50","author":"Surendran Nair","year":"2019","journal-title":"Vet Res"},{"key":"R26-20260716","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.1161\/CIRCRESAHA.117.311002","article-title":"Cardiovascular metabolomics","volume":"122","author":"McGarrah","year":"2018","journal-title":"Circ Res"},{"key":"R27-20260716","doi-asserted-by":"crossref","first-page":"416","DOI":"10.1038\/nchembio.1535","article-title":"Gut microbiota-generated metabolites in animal health and disease","volume":"10","author":"Lee","year":"2014","journal-title":"Nat Chem Biol"},{"key":"R28-20260716","doi-asserted-by":"crossref","first-page":"skae263","DOI":"10.1093\/jas\/skae263","article-title":"Multi-omics analysis reveals associations between host gene expression, gut microbiota, and metabolites in chickens","volume":"102","author":"Shi","year":"2024","journal-title":"J Anim Sci"},{"key":"R29-20260716","doi-asserted-by":"crossref","first-page":"833","DOI":"10.1016\/j.immuni.2014.05.014","article-title":"Diet, metabolites, and \u201cWestern-lifestyle\u201d inflammatory diseases","volume":"40","author":"Thorburn","year":"2014","journal-title":"Immunity"},{"key":"R30-20260716","doi-asserted-by":"crossref","first-page":"277","DOI":"10.3389\/fimmu.2019.00277","article-title":"Short chain fatty acids (SCFAs)-mediated gut epithelial and immune regulation and its relevance for inflammatory bowel diseases","volume":"10","author":"Parada Venegas","year":"2019","journal-title":"Front Immunol"},{"key":"R31-20260716","doi-asserted-by":"crossref","first-page":"wrae242","DOI":"10.1093\/ismejo\/wrae242","article-title":"Bilirubin reductase shows host-specific associations in animal large intestines","volume":"18","author":"Dufault-Thompson","year":"2024","journal-title":"ISME J"},{"key":"R32-20260716","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.3390\/microorganisms13051043","article-title":"Heterologous expression and enzymatic properties of \u03b2-glucuronidase from Clostridium perfringens and its application in bilirubin transformation","volume":"13","author":"Wu","year":"2025","journal-title":"Microorganisms"},{"key":"R33-20260716","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1186\/s13071-022-05340-5","article-title":"Alterations in the jejunal microbiota and fecal metabolite profiles of rabbits infected with Eimeria intestinalis","volume":"15","author":"Yuan","year":"2022","journal-title":"Parasit Vectors"},{"key":"R34-20260716","doi-asserted-by":"crossref","first-page":"7337","DOI":"10.2147\/JIR.S513900","article-title":"Gut microbiota and tryptophan metabolism as therapeutic targets for spinal cord injury: Insights from probiotic treatment","volume":"18","author":"Dong","year":"2025","journal-title":"J Inflamm Res"},{"key":"R35-20260716","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1038\/nature24661","article-title":"A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites","volume":"551","author":"Dodd","year":"2017","journal-title":"Nature"},{"key":"R36-20260716","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1016\/j.bbi.2022.08.003","article-title":"Microbiota-derived metabolite indoles induced aryl hydrocarbon receptor activation and inhibited neuroinflammation in APP\/PS1 mice","volume":"106","author":"Sun","year":"2022","journal-title":"Brain Behav Immun"},{"key":"R37-20260716","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.cropro.2019.02.006","article-title":"Evaluation of a small molecule compound 3-indolylacetonitrile for control of bacterial spot on tomato","volume":"120","author":"Liu","year":"2019","journal-title":"Crop Prot"},{"key":"R38-20260716","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s41936-019-0098-y","article-title":"The chronic effects of cyanide on oxidative stress indices in the domestic chicken (Gallus domesticus L.)","volume":"80","author":"Kadiri","year":"2019","journal-title":"J Basic Appl Zool"},{"key":"R39-20260716","doi-asserted-by":"crossref","first-page":"104244","DOI":"10.1016\/j.psj.2024.104244","article-title":"Metabolomic analysis reveals altered amino acid metabolism and mechanisms underlying Eimeria infection in laying hens","volume":"103","author":"Lee","year":"2024","journal-title":"Poult Sci"},{"key":"R40-20260716","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1016\/j.chom.2012.09.013","article-title":"Mitochondrial metabolism of glucose and glutamine is required for intracellular growth of Toxoplasma gondii","volume":"12","author":"MacRae","year":"2012","journal-title":"Cell Host Microbe"},{"key":"R41-20260716","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1016\/j.smim.2007.04.002","article-title":"Paneth cells, defensins, and the commensal microbiota: A hypothesis on intimate interplay at the intestinal mucosa","volume":"19","author":"Salzman","year":"2007","journal-title":"Semin Immunol"},{"key":"R42-20260716","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1038\/nrmicro2114","article-title":"Do symbiotic bacteria subvert host immunity?","volume":"7","author":"Hooper","year":"2009","journal-title":"Nat Rev Microbiol"},{"key":"R43-20260716","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1667\/RADE-21-00223.1","article-title":"Hypoxanthine reduces radiation damage in vascular endothelial cells and mouse skin by enhancing ATP production via the salvage pathway","volume":"197","author":"Fujiwara","year":"2022","journal-title":"Radiat Res"}],"container-title":["International Journal of Veterinary Science and Medicine"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.lww.com\/10.4103\/IJVSM.IJVSM_1_26","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T21:44:31Z","timestamp":1784238271000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.lww.com\/10.4103\/IJVSM.IJVSM_1_26"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,5]]},"references-count":43,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026]]}},"URL":"https:\/\/doi.org\/10.4103\/ijvsm.ijvsm_1_26","relation":{},"ISSN":["2314-4580","2314-4599"],"issn-type":[{"value":"2314-4580","type":"print"},{"value":"2314-4599","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,5]]},"assertion":[{"value":"2026-01-07","name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-05-03","name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}}]}}