{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T07:46:00Z","timestamp":1773215160314,"version":"3.50.1"},"reference-count":35,"publisher":"Elsevier BV","issue":"7","license":[{"start":{"date-parts":[[2021,7,1]],"date-time":"2021-07-01T00:00:00Z","timestamp":1625097600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2021,7,1]],"date-time":"2021-07-01T00:00:00Z","timestamp":1625097600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T00:00:00Z","timestamp":1669852800000},"content-version":"vor","delay-in-days":518,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Food Protection"],"published-print":{"date-parts":[[2021,7]]},"DOI":"10.4315\/jfp-20-417","type":"journal-article","created":{"date-parts":[[2021,2,10]],"date-time":"2021-02-10T02:12:16Z","timestamp":1612923136000},"page":"1104-1113","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":15,"title":["Identification of Closely Related Listeria monocytogenes Isolates with No Apparent Evidence for a Common Source or Location: A Retrospective Whole Genome Sequencing Analysis"],"prefix":"10.1016","volume":"84","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4933-9817","authenticated-orcid":false,"given":"Renato H.","family":"Orsi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Balamurugan","family":"Jagadeesan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leen","family":"Baert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Wiedmann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.4315\/JFP-20-417_bb0010","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul,","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"10.4315\/JFP-20-417_bb0015","doi-asserted-by":"crossref","first-page":"848","DOI":"10.1017\/S0950268816003083","article-title":"Multistate outbreak of Listeria monocytogenes infections linked to whole apples used in commercially produced, prepackaged caramel apples: United States, 2014\u20132015","volume":"145","author":"Angelo,","year":"2017","journal-title":"Epidemiol. Infect"},{"key":"10.4315\/JFP-20-417_bb0020","doi-asserted-by":"crossref","first-page":"2095","DOI":"10.4315\/0362-028X.JFP-16-241","article-title":"Development and validation of pathogen environmental monitoring programs for small cheese processing facilities","volume":"79","author":"Beno,","year":"2016","journal-title":"J. Food Prot"},{"key":"10.4315\/JFP-20-417_bb0025","doi-asserted-by":"crossref","first-page":"2282","DOI":"10.3389\/fmicb.2019.02282","article-title":"Isolate-based surveillance of Listeria monocytogenes by whole genome sequencing in Austria","volume":"10","author":"Cabal,","year":"2019","journal-title":"Front. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0030","author":"Centers for Disease Control and Prevention (CDC).","year":"2015","journal-title":"Wholesome Soy Products, Inc"},{"key":"10.4315\/JFP-20-417_bb0035","doi-asserted-by":"crossref","first-page":"108793","DOI":"10.1016\/j.ijfoodmicro.2020.108793","article-title":"Pre-growth conditions and strain diversity affect nisin treatment efficacy against Listeria monocytogenes on cold-smoked salmon","volume":"333","author":"Chen,","year":"2020","journal-title":"Int. J. Food Microbiol"},{"key":"10.4315\/JFP-20-417_bb0040","doi-asserted-by":"crossref","first-page":"7030","DOI":"10.1128\/AEM.01486-16","article-title":"Listeria monocytogenes in stone fruits linked to a multistate outbreak: enumeration of cells and whole-genome sequencing","volume":"82","author":"Chen,","year":"2016","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0045","doi-asserted-by":"crossref","first-page":"e0231393","DOI":"10.1371\/journal.pone.0231393","article-title":"Genetic diversity and profiles of genes associated with virulence and stress resistance among isolates from the 2010\u20132013 interagency Listeria monocytogenes market basket survey","volume":"15","author":"Chen,","year":"2020","journal-title":"PLoS One"},{"key":"10.4315\/JFP-20-417_bb0050","doi-asserted-by":"crossref","first-page":"e00633","DOI":"10.1128\/AEM.00633-17","article-title":"Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to cheese, United States, 2013","volume":"83","author":"Chen,","year":"2017","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0055","doi-asserted-by":"crossref","first-page":"e20","DOI":"10.7717\/peerj-cs.20","article-title":"CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data","volume":"1","author":"Davis,","year":"2015","journal-title":"PeerJ Comp. Sci"},{"key":"10.4315\/JFP-20-417_bb0060","doi-asserted-by":"crossref","first-page":"5833","DOI":"10.1128\/AEM.70.10.5833-5841.2004","article-title":"Listeria monocytogenes isolates from foods and humans form distinct but overlapping populations","volume":"70","author":"Gray,","year":"2004","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0065","doi-asserted-by":"crossref","first-page":"e02493","DOI":"10.1128\/AEM.02493-19","article-title":"Evolution of Listeria monocytogenes in a food processing plant involves limited single-nucleotide substitutions but considerable diversification by gain and loss of prophages","volume":"86","author":"Harrand,","year":"2020","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0070","doi-asserted-by":"crossref","first-page":"380","DOI":"10.1093\/cid\/ciw242","article-title":"Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation","volume":"63","author":"Jackson,","year":"2016","journal-title":"Clin. Infect. Dis"},{"key":"10.4315\/JFP-20-417_bb0075","doi-asserted-by":"crossref","first-page":"947","DOI":"10.3389\/fmicb.2019.00947","article-title":"Comparative analysis of tools and approaches for source tracking Listeria monocytogenes in a food facility using whole-genome sequence data","volume":"10","author":"Jagadeesan,","year":"2019","journal-title":"Front. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0080","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1111\/1758-2229.12552","article-title":"Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveal clonal diversity and date the emergence of persisting sequence types","volume":"9","author":"Knudsen,","year":"2017","journal-title":"Environ. Microbiol. Rep"},{"key":"10.4315\/JFP-20-417_bb0085","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1186\/s12866-017-1043-1","article-title":"Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State","volume":"17","author":"Li,","year":"2017","journal-title":"BMC Microbiol"},{"key":"10.4315\/JFP-20-417_bb0090","unstructured":"J., Liao, S., Guo D., Weller S., Pollack D. H., Buckley M., Wiedmann and O. X.Cordero . Genomic signatures of habitat adaptation in edaphic Listeria across the United States . Unpublished data."},{"key":"10.4315\/JFP-20-417_bb0095","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.00306-17","article-title":"Genetic stability and evolution of the sigB allele, used for Listeria sensu stricto subtyping and phylogenetic inference","volume":"83","author":"Liao,","year":"2017","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0100","doi-asserted-by":"crossref","first-page":"2488","DOI":"10.1038\/s41467-019-10380-0","article-title":"Hypervirulent Listeria monocytogenes clones' adaption to mammalian gut accounts for their association with dairy products","volume":"10","author":"Maury,","year":"2019","journal-title":"Nat. Commun"},{"key":"10.4315\/JFP-20-417_bb0105","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1056\/NEJMoa1215837","article-title":"Multistate outbreak of listeriosis associated with cantaloupe","volume":"369","author":"McCollum,","year":"2013","journal-title":"N. Engl. J. Med"},{"key":"10.4315\/JFP-20-417_bb0110","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1128\/JCM.01532-14","article-title":"Geographically distinct Escherichia coli O157 isolates differ by lineage, Shiga toxin genotype, and total Shiga toxin production","volume":"53","author":"Mellor,","year":"2015","journal-title":"J. Clin. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0115","doi-asserted-by":"crossref","first-page":"16185","DOI":"10.1038\/nmicrobiol.2016.185","article-title":"Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes","volume":"2","author":"Moura,","year":"2016","journal-title":"Nat. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0120","first-page":"30544","article-title":"PulseNet International: vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance","volume":"22","author":"FWD-NEXT Expert Panel.","year":"2017","journal-title":"Euro Surveill"},{"key":"10.4315\/JFP-20-417_bb0125","doi-asserted-by":"crossref","first-page":"1151E","DOI":"10.2903\/sp.efsa.2017.EN-1151","article-title":"Closing gaps for performing a risk assessment on Listeria monocytogenes in ready-to-eat (RTE) foods: activity 3, the comparison of isolates from different compartments along the food chain, and from humans using whole genome sequencing (WGS) analysis","volume":"14","author":"Nielsen,","year":"2017","journal-title":"EFSA Supporting Publications"},{"key":"10.4315\/JFP-20-417_bb0130","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1016\/j.ijmm.2010.05.002","article-title":"Listeria monocytogenes lineages: genomics, evolution, ecology, and phenotypic characteristics","volume":"301","author":"Orsi,","year":"2010","journal-title":"Int. J. Med. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0135","doi-asserted-by":"crossref","first-page":"1482","DOI":"10.3389\/fmicb.2018.01482","article-title":"Interpreting whole-genome sequence analyses of foodborne bacteria for regulatory applications and outbreak investigations","volume":"9","author":"Pightling,","year":"2018","journal-title":"Front. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0140","doi-asserted-by":"crossref","first-page":"e1000146","DOI":"10.1371\/journal.ppat.1000146","article-title":"A new perspective on Listeria monocytogenes evolution","volume":"4","author":"Ragon,","year":"2008","journal-title":"PLoS Pathog"},{"key":"10.4315\/JFP-20-417_bb0145","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/j.ijfoodmicro.2019.03.007","article-title":"Whole genome sequencing used in an industrial context reveals a Salmonella laboratory cross-contamination","volume":"298","author":"Rouzeau-Szynalski,","year":"2019","journal-title":"Int. J. Food Microbiol"},{"key":"10.4315\/JFP-20-417_bb0150","doi-asserted-by":"crossref","first-page":"93","DOI":"10.4315\/0362-028X-69.1.93","article-title":"Molecular characterization of Listeria monocytogenes from natural and urban environments","volume":"69","author":"Sauders,","year":"2006","journal-title":"J. Food Prot"},{"key":"10.4315\/JFP-20-417_bb0155","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","author":"Stamatakis,","year":"2014","journal-title":"Bioinformatics"},{"key":"10.4315\/JFP-20-417_bb0160","doi-asserted-by":"crossref","first-page":"6024","DOI":"10.1128\/AEM.01049-15","article-title":"Whole-genome sequencing allows for improved identification of persistent Listeria monocytogenes in food-associated environments","volume":"81","author":"Stasiewicz,","year":"2015","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0165","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1016\/j.vetmic.2017.12.021","article-title":"Genetic characterization of Listeria monocytogenes from ruminant listeriosis from different geographical regions in the U.S","volume":"215","author":"Steckler,","year":"2018","journal-title":"Vet. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0170","doi-asserted-by":"crossref","first-page":"3982","DOI":"10.1128\/AEM.00348-14","article-title":"Distributions of Salmonella subtypes differ between two U.S. produce-growing regions","volume":"80","author":"Strawn,","year":"2014","journal-title":"Appl. Environ. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0175","doi-asserted-by":"crossref","first-page":"3492","DOI":"10.1128\/JCM.00202-15","article-title":"It is not all about single nucleotide polymorphisms: comparison of mobile genetic elements and deletions in Listeria monocytogenes genomes links cases of hospital-acquired listeriosis to the environmental source","volume":"53","author":"Wang,","year":"2015","journal-title":"J. Clin. Microbiol"},{"key":"10.4315\/JFP-20-417_bb0180","doi-asserted-by":"crossref","first-page":"2082","DOI":"10.4315\/0362-028X.JFP-18-093","article-title":"Genetic diversity of Salmonella and Listeria isolates from food facilities","volume":"81","author":"Wang,","year":"2018","journal-title":"J. Food Prot"}],"container-title":["Journal of Food Protection"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0362028X2205668X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0362028X2205668X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/meridian.allenpress.com\/jfp\/article-pdf\/84\/7\/1104\/2856321\/i0362-028x-84-7-1104.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/meridian.allenpress.com\/jfp\/article-pdf\/84\/7\/1104\/2856321\/i0362-028x-84-7-1104.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,6]],"date-time":"2025-10-06T22:29:27Z","timestamp":1759789767000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0362028X2205668X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,7]]},"references-count":35,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2021,7]]}},"alternative-id":["S0362028X2205668X"],"URL":"https:\/\/doi.org\/10.4315\/jfp-20-417","relation":{},"ISSN":["0362-028X"],"issn-type":[{"value":"0362-028X","type":"print"}],"subject":[],"published":{"date-parts":[[2021,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Identification of Closely Related Listeria monocytogenes Isolates with No Apparent Evidence for a Common Source or Location: A Retrospective Whole Genome Sequencing Analysis","name":"articletitle","label":"Article Title"},{"value":"Journal of Food Protection","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.4315\/JFP-20-417","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2021 International Association for Food Protection. Published by Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}