{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T07:52:29Z","timestamp":1791877949500,"version":"4.3.4"},"reference-count":117,"publisher":"Korean Society of Animal Science and Technology","issue":"5","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0"}],"content-domain":{"domain":["www.ejast.org"],"crossmark-restriction":true},"short-container-title":["J Anim Sci Technol"],"published-print":{"date-parts":[[2026,9]]},"abstract":"<jats:p>Various beef cattle breeds are raised in different countries. Hanwoo and Wagyu\n                    breeds are primarily raised in Korea and Japan, respectively, whereas Angus\n                    breed is one of the most widely bred beef cattle breed worldwide. Although\n                    microbiome studies have been conducted for each breed, comparative analyses of\n                    the ruminal microbiome and their functions across breeds remain limited.\n                    Moreover, the potential links between the ruminal microbiome and animal traits\n                    related to meat quality and productivity have not been studied. Based on 13\n                    studies comprising 954 samples (Hanwoo: 384, Angus: 246, Wagyu: 324) with the\n                    application of an optimal batch-effect adjustment tool, this meta-analysis aimed\n                    to compare the ruminal microbiome across Hanwoo, Angus, and Wagyu and explore\n                    potential associations between breed-specific microbiome profiles and key\n                    phenotypic traits, such as meat quality and production performance. The overall\n                    microbial composition at the phylum, genus, and Kyoto Encyclopedia of Genes and\n                    Genomes (KEGG) ortholog levels was effectively adjusted batch-effect using the\n                    selected adjustment tool (ConQuR). Subsequent analyses were conducted using\n                    batch-effect adjusted microbiome data to investigate the breed-specific\n                    differences. Cellulolytic bacteria such as Bacteroides,\n                        Fibrobacter, Lacrimispora, and\n                        Ruminococcus were dominant in Angus, whereas saccharolytic\n                    bacteria such as Selenomonas, Olsenella,\n                        Sporomusa, Streptococcus, and\n                        Bifidobacterium were relatively abundant in Wagyu.\n                    Predicted KEGG modules revealed that ubiquinone and biotin biosynthesis pathways\n                    were enriched in Angus, whereas amino acid biosynthesis was enriched in Wagyu.\n                    Hanwoo exhibited intermediate traits at both the phylum and genus taxonomic\n                    levels. In the comparative network analysis, Prevotella and\n                        Dialister were the keystone genera in Angus,\n                        Mogibacterium in Wagyu, and Streptococcus\n                    in Hanwoo. In archaeal microbiome comparisons, methane metabolism-related KEGG\n                    modules were enriched in Angus. KEGG modules and taxa previously known as high\n                    average daily gain-related were relatively enriched in Angus, whereas Wagyu was\n                    characterized by those related to high intramuscular fat. Hanwoo exhibited\n                    intermediate traits in both productivity and meat quality, and the microbiome\n                    features were between those of Angus and Wagyu. These findings suggest a\n                    potential link between the ruminal microbiome and meat quality- and\n                    productivity-related traits in beef cattle.<\/jats:p>","DOI":"10.5187\/jast.2500254","type":"journal-article","created":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T06:30:52Z","timestamp":1760941852000},"page":"1544-1566","update-policy":"https:\/\/doi.org\/10.5187\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Meta-analysis with batch-effect adjustment reveals breed-specific\n                    ruminal microbiome variation of beef cattle and its implications for meat\n                    quality and productivity"],"prefix":"10.5187","volume":"68","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-6202-1283","authenticated-orcid":false,"given":"Ryukseok","family":"Kang","sequence":"first","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-6275-800X","authenticated-orcid":false,"given":"Chaemin","family":"Yu","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-1899-2359","authenticated-orcid":false,"given":"Yeonsue","family":"Gwon","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-0187-1347","authenticated-orcid":false,"given":"Sangmin","family":"Lee","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-5496-0341","authenticated-orcid":false,"given":"Joohyuk","family":"Yang","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-8660-5598","authenticated-orcid":false,"given":"Jongsik","family":"Jeong","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-8080-5860","authenticated-orcid":false,"given":"Geonwoo","family":"Kim","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-4243-0188","authenticated-orcid":false,"given":"Woohyung","family":"Lee","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0006-9607-550X","authenticated-orcid":false,"given":"Wanho","family":"Jo","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-2021-0143","authenticated-orcid":false,"given":"Myeong-Gwan","family":"Oh","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-9771-5342","authenticated-orcid":false,"given":"Changbeen","family":"Jang","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9894-2562","authenticated-orcid":false,"given":"Mekonnen","family":"Tilahun","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1906-5520","authenticated-orcid":false,"given":"Joonpyo","family":"Oh","sequence":"additional","affiliation":[{"name":"Cargill Animal Nutrition, Seongnam, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4480-4524","authenticated-orcid":false,"given":"Tansol","family":"Park","sequence":"additional","affiliation":[{"name":"Department of Animal Science and Technology, Chung-Ang University, Anseong, Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"3132","published-online":{"date-parts":[[2026,9,30]]},"reference":[{"key":"key2.0261013094154e+13_B1","doi-asserted-by":"crossref","first-page":"32","DOI":"10.2527\/af.2012-0060","article-title":"Keys to production and processing of Hanwoo beef: a perspective\n                        of tradition and science","volume":"2","author":"Jo","year":"2012","journal-title":"Anim Front."},{"key":"key2.0261013094154e+13_B2","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1016\/j.livsci.2018.06.017","article-title":"Performance, carcass traits and meat quality of Aberdeen Angus,\n                        Gascon, Holstein and Fleckvieh finishing bulls","volume":"214","author":"Bure\u0161","year":"2018","journal-title":"Livest Sci."},{"key":"key2.0261013094154e+13_B3","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.meatsci.2016.04.026","article-title":"Wagyu and the factors contributing to its beef quality: a\n                        Japanese industry overview","volume":"120","author":"Motoyama","year":"2016","journal-title":"Meat Sci."},{"key":"key2.0261013094154e+13_B4","first-page":"1","article-title":"Prospect and retrospect on improvement of Hanwoo (Korean cattle)\n                        for 50 years","volume":"6","author":"Kim","year":"2014","journal-title":"Bull Anim Biotechnol."},{"key":"key2.0261013094154e+13_B5","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/2055-0391-56-2","article-title":"Hanwoo cattle: origin, domestication, breeding strategies and\n                        genomic selection","volume":"56","author":"Lee","year":"2014","journal-title":"J Anim Sci Technol."},{"key":"key2.0261013094154e+13_B6","doi-asserted-by":"crossref","first-page":"519","DOI":"10.5187\/JAST.2008.50.4.519","article-title":"Comparison of cholesterol contents and fatty acid composition in\n                        M. longissimus of Hanwoo, Angus and Wagyu crossbred steers","volume":"50","author":"Choi","year":"2008","journal-title":"J Anim Sci Technol."},{"key":"key2.0261013094154e+13_B7","doi-asserted-by":"crossref","first-page":"1717","DOI":"10.2527\/1999.7771717x","article-title":"Relationship of fatty acid composition to intramuscular fat\n                        content in beef from crossbred Wagyu cattle","volume":"77","author":"Kazala","year":"1999","journal-title":"J Anim Sci."},{"key":"key2.0261013094154e+13_B8","doi-asserted-by":"crossref","first-page":"659","DOI":"10.5187\/JAST.2004.46.4.659","article-title":"Meat quality of highly marbled imported beef with reference to\n                        Hanwoo beef","volume":"46","author":"Hwang","year":"2004","journal-title":"J Anim Sci Technol."},{"key":"key2.0261013094154e+13_B9","doi-asserted-by":"crossref","first-page":"1368710","DOI":"10.3389\/fgene.2024.1368710","article-title":"Signatures of selection in Angus and Hanwoo beef cattle using\n                        imputed whole genome sequence data","volume":"15","author":"Nawaz","year":"2024","journal-title":"Front Genet."},{"key":"key2.0261013094154e+13_B10","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1007\/s00335-013-9449-z","article-title":"Genome-wide copy number variation in Hanwoo, Black Angus, and\n                        Holstein cattle","volume":"24","author":"Choi","year":"2013","journal-title":"Mamm Genome."},{"key":"key2.0261013094154e+13_B11","doi-asserted-by":"crossref","first-page":"933","DOI":"10.5713\/ajas.18.0333","article-title":"The Japanese Wagyu beef industry: current situation and future\n                        prospects \u2014 a 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alterations","volume":"22","author":"Whon","year":"2021","journal-title":"EMBO Rep."},{"key":"key2.0261013094154e+13_B20","doi-asserted-by":"crossref","first-page":"1700","DOI":"10.4014\/jmb.1803.03002","article-title":"Effects of sampling techniques and sites on rumen microbiome and\n                        fermentation parameters in Hanwoo steers","volume":"28","author":"Song","year":"2018","journal-title":"J Microbiol Biotechnol."},{"key":"key2.0261013094154e+13_B21","doi-asserted-by":"crossref","first-page":"712","DOI":"10.3390\/ani10040712","article-title":"Association between rumen microbiota and marbling score in Korean\n                        native beef cattle","volume":"10","author":"Kim","year":"2020","journal-title":"Animals"},{"key":"key2.0261013094154e+13_B22","doi-asserted-by":"crossref","first-page":"701081","DOI":"10.3389\/fmicb.2021.701081","article-title":"Feeding systems and host breeds influence ruminal fermentation,\n                        methane production, microbial diversity and metagenomic gene\n                        abundance","volume":"12","author":"Bharanidharan","year":"2021","journal-title":"Front Microbiol."},{"key":"key2.0261013094154e+13_B23","doi-asserted-by":"crossref","first-page":"2995","DOI":"10.3390\/ani12212995","article-title":"Rumen microbial predictors for short-chain fatty acid levels and\n                        the grass-fed regimen in Angus cattle","volume":"12","author":"Liu","year":"2022","journal-title":"Animals"},{"key":"key2.0261013094154e+13_B24","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1186\/s42523-022-00175-y","article-title":"Microbiome network traits in the rumen predict average daily gain\n                        in beef cattle under different backgrounding systems","volume":"4","author":"Omontese","year":"2022","journal-title":"Anim Microbiome."},{"key":"key2.0261013094154e+13_B25","doi-asserted-by":"crossref","first-page":"4899","DOI":"10.1038\/s41598-022-08540-2","article-title":"Integrative interactomics applied to bovine fescue\n                        toxicosis","volume":"12","author":"Mote","year":"2022","journal-title":"Sci Rep."},{"key":"key2.0261013094154e+13_B26","doi-asserted-by":"crossref","first-page":"30","DOI":"10.3390\/fermentation9010030","article-title":"Effects of dietary capsaicin and Yucca schidigera extracts as\n                        feed additives on rumen fermentation and microflora of beef cattle fed with\n                        a moderate-energy diet","volume":"9","author":"Yi","year":"2023","journal-title":"Fermentation"},{"key":"key2.0261013094154e+13_B27","doi-asserted-by":"crossref","first-page":"fiab152","DOI":"10.1093\/femsec\/fiab152","article-title":"Taxonomic and functional characterization of the rumen microbiome\n                        of Japanese Black cattle revealed by 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