{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,30]],"date-time":"2026-07-30T10:20:19Z","timestamp":1785406819325,"version":"3.56.0"},"reference-count":10,"publisher":"Naturalis Historia Publishing","license":[{"start":{"date-parts":[[2022,10,29]],"date-time":"2022-10-29T00:00:00Z","timestamp":1667001600000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-sa\/4.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:p>\n                    The flowering plant genus\n                    <jats:italic>Erythroxylum<\/jats:italic>\n                    contains approximately 300 species, including the economically and socially consequential crops called coca. We present the genome sequences of\n                    <jats:italic>Erythroxylum coca<\/jats:italic>\n                    and\n                    <jats:italic>E. novogranatense,<\/jats:italic>\n                    two cultigens produced for medicinal and quotidian use in the Andes and Amazon regions of South America, as well as the international cocaine industry. Sequencing was performed on an Illumina X-Ten platform, and reads were assembled by a\n                    <jats:italic>de novo<\/jats:italic>\n                    method followed by finishing via comparison with several species from the same genus. The BioProject, raw and assembled data can be accessed in GenBank for\n                    <jats:italic>E. coca<\/jats:italic>\n                    (PRJNA676123; JAJMLV000000000) and\n                    <jats:italic>E. novogranatense<\/jats:italic>\n                    (PRJNA675212; JAJKBF000000000).\n                  <\/jats:p>","DOI":"10.56179\/001c.39776","type":"journal-article","created":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T14:26:21Z","timestamp":1667312781000},"source":"Crossref","is-referenced-by-count":0,"title":["The complete genome sequences of\n                    <i>Erythroxylum coca<\/i>\n                    and\n                    <i>Erythroxylum novogranatense<\/i>"],"prefix":"10.56179","author":[{"given":"Dawson","family":"White","sequence":"first","affiliation":[{"name":"Field Museum","department":["Grainger Bioinformatics Center, Science and Education Department"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lyndel","family":"Meinhardt","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/03pvyf116","id-type":"ROR","asserted-by":"publisher"}],"name":"ARS\/USDA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bryan","family":"Bailey","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/03pvyf116","id-type":"ROR","asserted-by":"publisher"}],"name":"ARS\/USDA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stacy","family":"Pirro","sequence":"additional","affiliation":[{"id":[{"id":"https:\/\/ror.org\/045qred77","id-type":"ROR","asserted-by":"publisher"}],"name":"Iridian Genomes"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"35248","published-online":{"date-parts":[[2022,10,29]]},"reference":[{"issue":"5","key":"ref1","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Anton Bankevich","year":"2012","journal-title":"Journal of Computational Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"15","key":"ref2","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: A flexible trimmer for Illumina Sequence Data","volume":"30","author":"Anthony M. Bolger","year":"2014","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1460-2059","issn-type":"print"},{"key":"ref3","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1016\/j.forsciint.2014.01.012","article-title":"Chemosystematic identification of fifteen new cocaine-bearing Erythroxylum cultigens grown in Colombia for illicit cocaine production","volume":"237","author":"John F. Casale","year":"2014","journal-title":"Forensic Science International","ISSN":"https:\/\/id.crossref.org\/issn\/0379-0738","issn-type":"print"},{"issue":"326","key":"ref4","doi-asserted-by":"publisher","first-page":"939","DOI":"10.1017\/s0003598x00067004","article-title":"Early Holocene Coca Chewing In Northern Peru","volume":"84","author":"Tom D. Dillehay","year":"2010","journal-title":"Antiquity","ISSN":"https:\/\/id.crossref.org\/issn\/0003-598X","issn-type":"print"},{"key":"ref5","article-title":"ZANFONA, a genome finishing process for short read assemblies","author":"M. Kieras","year":"2021"},{"issue":"20","key":"ref6","doi-asserted-by":"publisher","first-page":"9645","DOI":"10.1073\/pnas.90.20.9645","article-title":"Cocaine as a naturally occurring insecticide.","volume":"90","author":"J. A. Nathanson","year":"1993","journal-title":"Proceedings of the National Academy of Sciences of the United States of America","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"key":"ref7","article-title":"The Ethnobotany of Coca (Erythroxylum spp., Erythroxylaceae)","author":"T. Plowman","year":"1984","journal-title":"Repos. Inst. CEDRO"},{"issue":"20","key":"ref8","doi-asserted-by":"publisher","first-page":"3788","DOI":"10.3390\/molecules24203788","article-title":"Erythroxylum in Focus: An Interdisciplinary Review of an Overlooked Genus","volume":"24","author":"David A. Restrepo","year":"2019","journal-title":"Molecules (Basel, Switzerland)","ISSN":"https:\/\/id.crossref.org\/issn\/1420-3049","issn-type":"print"},{"key":"ref9","article-title":"Genome size and descriptors of leaf morphology as indicators of hybridization in colombian cultigens of coca Erythroxylum spp","author":"F.V. Rodr\u00edguez Zapata","year":"2015"},{"issue":"1","key":"ref10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/sysbio\/syaa074","article-title":"The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor <i>Erythroxylum gracilipes<\/i>","volume":"70","author":"Dawson M. White","year":"2020","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"}],"container-title":["Biodiversity Genomes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/biodiversitygenomes.scholasticahq.com\/article\/39776-the-complete-genome-sequences-of-_erythroxylum-coca_-and-_erythroxylum-novogranatense_","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,16]],"date-time":"2025-06-16T12:45:42Z","timestamp":1750077942000},"score":1,"resource":{"primary":{"URL":"https:\/\/biodiversitygenomes.scholasticahq.com\/article\/39776-the-complete-genome-sequences-of-_erythroxylum-coca_-and-_erythroxylum-novogranatense_"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,10,29]]},"references-count":10,"URL":"https:\/\/doi.org\/10.56179\/001c.39776","relation":{},"ISSN":["2687-7945"],"issn-type":[{"value":"2687-7945","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,10,29]]}}}