{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T13:57:30Z","timestamp":1790776650399,"version":"4.1.0"},"reference-count":59,"publisher":"MathDoc\/Centre Mersenne","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:p>\n                    In 2022, the burden of cholera\u2014an acute watery diarrheal disease caused by\n                    <jats:italic>Vibrio cholerae<\/jats:italic>\n                    serogroup O1 (or more rarely O139) bacteria, which produce cholera toxin\u2014remains high in many African and Asian countries. In the last few years, microbial genomics has made it possible to define the bacterial populations responsible for cholera more precisely. It has been shown that the current, seventh pandemic is due to a single lineage with a reservoir in the countries of the Bay of Bengal (India and Bangladesh). There have been several transmissions of the causal agent of cholera from this region to Africa, Asia and Latin America, suggesting a human-to-human transmission of the disease. Microbial genetics can help to fight this scourge by providing insight into cholera epidemiology and through its use in disease monitoring, thereby contributing to the achievement of the World Health Organization\u2019s goal of reducing cholera deaths by 90% by 2030.\n                  <\/jats:p>","DOI":"10.5802\/crbiol.77","type":"journal-article","created":{"date-parts":[[2022,5,11]],"date-time":"2022-05-11T09:55:37Z","timestamp":1652262937000},"page":"37-56","source":"Crossref","is-referenced-by-count":6,"title":["Contribution of microbial genomics to cholera epidemiology"],"prefix":"10.5802","volume":"345","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0223-7215","authenticated-orcid":false,"given":"Caroline","family":"Rouard","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6791-6003","authenticated-orcid":false,"given":"Elisabeth","family":"Njamkepo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5796-6680","authenticated-orcid":false,"given":"Marie-Laure","family":"Quilici","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9941-5799","authenticated-orcid":false,"given":"Fran\u00e7ois-Xavier","family":"Weill","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"3842","published-online":{"date-parts":[[2022,5,11]]},"reference":[{"key":"key2025102316432027373_1","doi-asserted-by":"publisher","first-page":"1539","DOI":"10.1016\/S0140-6736(17)30559-7","article-title":"Cholera","volume":"390","author":"Clemens, J. D.","year":"2017","unstructured":"[1] Clemens, J. D.; Nair, G. B.; Ahmed, T.; Qadri, F.; Holmgren, J. Cholera, The Lancet, Volume 390 (2017), pp. 1539-1549","journal-title":"The Lancet"},{"key":"key2025102316432027373_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0003832","article-title":"Updated global burden of cholera in endemic countries","volume":"9","author":"Ali, M.","year":"2015","unstructured":"[2] Ali, M.; Nelson, A. R.; Lopez, A. L.; Sack, D. A. Updated global burden of cholera in endemic countries, PLoS Negl. Trop. Dis., Volume 9 (2015), e0003832","journal-title":"PLoS Negl. Trop. Dis."},{"key":"key2025102316432027373_3","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1016\/j.bbadis.2003.08.004","article-title":"Lipopolysaccharides of <span class=\"italique\">Vibrio cholerae<\/span>","volume":"1639","author":"Chatterjee, S. N.","year":"2003","unstructured":"[3] Chatterjee, S. N.; Chaudhuri, K. Lipopolysaccharides of Vibrio cholerae, Biochim. Biophys. Acta BBA - Mol. Basis Dis., Volume 1639 (2003), pp. 65-79","journal-title":"Biochim. Biophys. Acta BBA - Mol. Basis Dis."},{"key":"key2025102316432027373_4","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-41883-x","article-title":"High quality reference genomes for toxigenic and non-toxigenic <span class=\"italique\">Vibrio cholerae<\/span> serogroup O139. 1","volume":"9","author":"Dorman, M. J.","year":"2019","unstructured":"[4] Dorman, M. J.; Domman, D.; Uddin, M. I.; Sharmin, S.; Afrad, M. H.; Begum, Y. A.; Qadri, F.; Thomson, N. R. High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139. 1, Sci. Rep., Volume 9 (2019), 5865","journal-title":"Sci. Rep."},{"key":"key2025102316432027373_5","doi-asserted-by":"publisher","first-page":"E7730","DOI":"10.1073\/pnas.1608732113","article-title":"Origins of the current seventh cholera pandemic","volume":"113","author":"Hu, D.","year":"2016","unstructured":"[5] Hu, D.; Liu, B.; Feng, L.; Ding, P.; Guo, X.; Wang, M.; Cao, B.; Reeves, P. R.; Wang, L. Origins of the current seventh cholera pandemic, Proc. Natl. Acad. Sci. USA, Volume 113 (2016), p. E7730-E7739","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key2025102316432027373_6","doi-asserted-by":"publisher","first-page":"246","DOI":"10.1086\/341206","article-title":"Epidemic and endemic cholera trends over a 33-year period in Bangladesh","volume":"186","author":"Longini Jr., I. M.","year":"2002","unstructured":"[6] Longini Jr., I. M.; Yunus, M.; Zaman, K.; Siddique, A. K.; Sack, R. B.; Nizam, A. Epidemic and endemic cholera trends over a 33-year period in Bangladesh, J.\u00a0Infect. Dis., Volume 186 (2002), pp. 246-251","journal-title":"J.\u00a0Infect. Dis."},{"key":"key2025102316432027373_7","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1128\/CMR.8.1.48","article-title":"Cholera","volume":"8","author":"Kaper, J. B.","year":"1995","unstructured":"[7] Kaper, J. B.; Morris, J. G.; Levine, M. M. Cholera, Clin. Microbiol. Rev., Volume 8 (1995), pp. 48-86","journal-title":"Clin. Microbiol. Rev."},{"key":"key2025102316432027373_8","author":"Bourdelais, P.","year":"1987","unstructured":"[8] Bourdelais, P.; Dodin, A. Visages du Chol\u00e9ra, Belin, Paris, 1987","journal-title":"Visages du Chol\u00e9ra"},{"key":"key2025102316432027373_9","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1056\/NEJMoa1308663","article-title":"Second-pandemic strain of <span class=\"italique\">Vibrio cholerae<\/span> from the Philadelphia cholera outbreak of 1849","volume":"370","author":"Devault, A. M.","year":"2014","unstructured":"[9] Devault, A. M.; Golding, G. B.; Waglechner, N.; Enk, J. M.; Kuch, M.; Tien, J. H.; Shi, M.; Fisman, D. N.; Dhody, A. N.; Forrest, S.; Bos, K. I.; Earn, D. J. D.; Holmes, E. C.; Poinar, H. N. Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849, New Engl. J. Med., Volume 370 (2014), pp. 334-340","journal-title":"New Engl. J. Med."},{"key":"key2025102316432027373_10","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0169324","article-title":"Characterization and genetic variation of <span class=\"italique\">Vibrio cholerae<\/span> isolated from clinical and environmental sources in Thailand","volume":"12","author":"Siriphap, A.","year":"2017","unstructured":"[10] Siriphap, A.; Leekitcharoenphon, P.; Kaas, R. S.; Theethakaew, C.; Aarestrup, F. M.; Sutheinkul, O.; Hendriksen, R. S. Characterization and genetic variation of Vibrio cholerae isolated from clinical and environmental sources in Thailand, PLoS One, Volume 12 (2017), e0169324","journal-title":"PLoS One"},{"key":"key2025102316432027373_11","doi-asserted-by":"publisher","first-page":"1556","DOI":"10.1073\/pnas.042667999","article-title":"Comparative genomic analysis of <span class=\"italique\">Vibrio cholerae<\/span>: genes that correlate with cholera endemic and pandemic disease","volume":"99","author":"Dziejman, M.","year":"2002","unstructured":"[11] Dziejman, M.; Balon, E.; Boyd, D.; Fraser, C. M.; Heidelberg, J. F.; Mekalanos, J. J. Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease, Proc. Natl. Acad. Sci. USA, Volume 99 (2002), pp. 1556-1561","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key2025102316432027373_12","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1111\/j.1574-6968.1990.tb04067.x","article-title":"Expression of virulence factors by classical and El Tor <span class=\"italique\">Vibrio cholerae<\/span>\u00a0<span class=\"italique\">in\u00a0vivo<\/span> and <span class=\"italique\">in\u00a0vitro<\/span>","volume":"74","author":"Jonson, G.","year":"1990","unstructured":"[12] Jonson, G.; Svennerholm, A.-M.; Holmgren, J. Expression of virulence factors by classical and El Tor Vibrio cholerae\u00a0in\u00a0vivo and in\u00a0vitro, FEMS Microbiol. Lett., Volume 74 (1990), pp. 221-228","journal-title":"FEMS Microbiol. Lett."},{"key":"key2025102316432027373_13","doi-asserted-by":"publisher","first-page":"3633","DOI":"10.1128\/IAI.01750-05","article-title":"Differences in gene expression between the classical and El Tor biotypes of <span class=\"italique\">Vibrio cholerae<\/span> O1","volume":"74","author":"Beyhan, S.","year":"2006","unstructured":"[13] Beyhan, S.; Tischler, A. D.; Camilli, A.; Yildiz, F. H. Differences in gene expression between the classical and El Tor biotypes of Vibrio cholerae O1, Infect. Immun., Volume 74 (2006), pp. 3633-3642","journal-title":"Infect. Immun."},{"key":"key2025102316432027373_14","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-26847-y","article-title":"Type VI secretion system mutations reduced competitive fitness of classical <span class=\"italique\">Vibrio cholerae<\/span> biotype","volume":"12","author":"Kostiuk, B.","year":"2021","unstructured":"[14] Kostiuk, B.; Santoriello, F. J.; Diaz-Satizabal, L.; Bisaro, F.; Lee, K.-J.; Dhody, A. N.; Provenzano, D.; Unterweger, D.; Pukatzki, S. Type VI secretion system mutations reduced competitive fitness of classical Vibrio cholerae biotype, Nat. Commun., Volume 12 (2021), 6457","journal-title":"Nat. Commun."},{"key":"key2025102316432027373_15","doi-asserted-by":"publisher","first-page":"6547","DOI":"10.1128\/IAI.00695-06","article-title":"2,3-butanediol synthesis and the emergence of the <span class=\"italique\">Vibrio cholerae<\/span> El Tor biotype","volume":"74","author":"Yoon, S. S.","year":"2006","unstructured":"[15] Yoon, S. S.; Mekalanos, J. J. 2,3-butanediol synthesis and the emergence of the Vibrio cholerae El Tor biotype, Infect. Immun., Volume 74 (2006), pp. 6547-6556","journal-title":"Infect. Immun."},{"key":"key2025102316432027373_16","doi-asserted-by":"publisher","first-page":"1910","DOI":"10.1126\/science.272.5270.1910","article-title":"Lysogenic conversion by a filamentous phage encoding cholera toxin","volume":"272","author":"Waldor, M. K.","year":"1996","unstructured":"[16] Waldor, M. K.; Mekalanos, J. J. Lysogenic conversion by a filamentous phage encoding cholera toxin, Science, Volume 272 (1996), pp. 1910-1914","journal-title":"Science"},{"key":"key2025102316432027373_17","doi-asserted-by":"publisher","first-page":"725","DOI":"10.4014\/jmb.1403.03063","article-title":"CTX Prophages in <span class=\"italique\">Vibrio cholerae<\/span> O1 Strains","volume":"24","author":"Kim, E. J.","year":"2014","unstructured":"[17] Kim, E. J.; Lee, D.; Moon, S. H.; Lee, C. H.; Kim, D. W. CTX Prophages in Vibrio cholerae O1 Strains, J.\u00a0Microbiol. Biotechnol., Volume 24 (2014), pp. 725-731","journal-title":"J.\u00a0Microbiol. Biotechnol."},{"key":"key2025102316432027373_18","first-page":"161","article-title":"Studies on typing of cholera by bacteriophage. Part I. Phage typing of <span class=\"italique\">Vibrio cholerae<\/span> from Calcutta epidemics","volume":"17","author":"Mukerjee, S.","year":"1957","unstructured":"[18] Mukerjee, S.; Guha, D. K.; Roy, U. G. Studies on typing of cholera by bacteriophage. Part I. Phage typing of Vibrio cholerae from Calcutta epidemics, Ann. Biochem. Exp. Med., Volume 17 (1957), pp. 161-176","journal-title":"Ann. Biochem. Exp. Med."},{"key":"key2025102316432027373_19","first-page":"664","article-title":"Lysogenic, phagetyping, serological and biochemical study (cholera-red reaction and search for lysine decarboxylase) of a collection of <span class=\"italique\">Vibrio cholerae<\/span> and vibrio El-Tor","volume":"99","author":"Nicolle, P.","year":"1960","unstructured":"[19] Nicolle, P.; Gallut, J.; Le Minor, L. Lysogenic, phagetyping, serological and biochemical study (cholera-red reaction and search for lysine decarboxylase) of a collection of Vibrio cholerae and vibrio El-Tor, Ann. Inst. Pasteur., Volume 99 (1960), pp. 664-671","journal-title":"Ann. Inst. Pasteur."},{"key":"key2025102316432027373_20","doi-asserted-by":"publisher","first-page":"1702","DOI":"10.1073\/pnas.0408992102","article-title":"Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages","volume":"102","author":"Faruque, S. M.","year":"2005","unstructured":"[20] Faruque, S. M.; Naser, I. B.; Islam, M. J.; Faruque, A. S. G.; Ghosh, A. N.; Nair, G. B.; Sack, D. A.; Mekalanos, J. J. Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages, Proc. Natl. Acad. Sci. USA, Volume 102 (2005), pp. 1702-1707","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key2025102316432027373_21","doi-asserted-by":"publisher","first-page":"6119","DOI":"10.1073\/pnas.0502069102","article-title":"Self-limiting nature of seasonal cholera epidemics: role of host-mediated amplification of phage","volume":"102","author":"Faruque, S. M.","year":"2005","unstructured":"[21] Faruque, S. M.; Islam, M. J.; Ahmad, Q. S.; Faruque, A. S. G.; Sack, D. A.; Nair, G. B.; Mekalanos, J. J. Self-limiting nature of seasonal cholera epidemics: role of host-mediated amplification of phage, Proc. Natl. Acad. Sci. USA, Volume 102 (2005), pp. 6119-6124","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key2025102316432027373_22","first-page":"337","article-title":"Bacteriophage typing of cholera","volume":"28","author":"Mukerjee, S.","year":"1963","unstructured":"[22] Mukerjee, S. Bacteriophage typing of cholera, Bull. World Health Organ., Volume 28 (1963), pp. 337-345","journal-title":"Bull. World Health Organ."},{"key":"key2025102316432027373_23","doi-asserted-by":"publisher","first-page":"1364","DOI":"10.1128\/JCM.00720-08","article-title":"Molecular analyses of <span class=\"italique\">Vibrio cholerae<\/span> O1 clinical strains, including new nontoxigenic variants isolated in Mexico during the cholera epidemic years between 1991 and 2000","volume":"47","author":"Liz\u00e1rraga-Partida, M. L.","year":"2009","unstructured":"[23] Liz\u00e1rraga-Partida, M. L.; Quilici, M.-L. Molecular analyses of Vibrio cholerae O1 clinical strains, including new nontoxigenic variants isolated in Mexico during the cholera epidemic years between 1991 and 2000, J.\u00a0Clin. Microbiol., Volume 47 (2009), pp. 1364-1371","journal-title":"J.\u00a0Clin. Microbiol."},{"key":"key2025102316432027373_24","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1128\/JCM.40.1.172-181.2002","article-title":"Pandemic spread of cholera: genetic diversity and relationships within the seventh pandemic clone of <span class=\"italique\">Vibrio cholerae<\/span> determined by amplified fragment length polymorphism","volume":"40","author":"Lan, R.","year":"2002","unstructured":"[24] Lan, R.; Reeves, P. R. Pandemic spread of cholera: genetic diversity and relationships within the seventh pandemic clone of Vibrio cholerae determined by amplified fragment length polymorphism, J.\u00a0Clin. Microbiol., Volume 40 (2002), pp. 172-181","journal-title":"J.\u00a0Clin. Microbiol."},{"key":"key2025102316432027373_25","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0002898","article-title":"Deciphering the origin of the 2012 cholera epidemic in Guinea by integrating epidemiological and molecular analyses","volume":"8","author":"Rebaudet, S.","year":"2014","unstructured":"[25] Rebaudet, S.; Mengel, M. A.; Koivogui, L.; Moore, S.; Mutreja, A.; Kande, Y.; Yattara, O.; Sarr Keita, V.; Njanpop-Lafourcade, B.-M.; Fournier, P.-E.; Garnotel, E.; Keita, S.; Piarroux, R. Deciphering the origin of the 2012 cholera epidemic in Guinea by integrating epidemiological and molecular analyses, PLoS Negl. Trop. Dis., Volume 8 (2014), e2898","journal-title":"PLoS Negl. Trop. Dis."},{"key":"key2025102316432027373_26","doi-asserted-by":"publisher","first-page":"789","DOI":"10.1126\/science.aao2136","article-title":"Integrated view of <span class=\"italique\">Vibrio cholerae<\/span> in the Americas","volume":"358","author":"Domman, D.","year":"2017","unstructured":"[26] Domman, D.; Quilici, M.-L.; Dorman, M. J.; Njamkepo, E.; Mutreja, A.; Mather, A. E.; Delgado, G.; Morales-Espinosa, R.; Grimont, P. A. D.; Liz\u00e1rraga-Partida, M. L.; Bouchier, C.; Aanensen, D. M.; Kuri-Morales, P.; Tarr, C. L.; Dougan, G.; Parkhill, J.; Campos, J.; Cravioto, A.; Weill, F.-X.; Thomson, N. R. Integrated view of Vibrio cholerae in the Americas, Science, Volume 358 (2017), pp. 789-793","journal-title":"Science"},{"key":"key2025102316432027373_27","doi-asserted-by":"publisher","first-page":"477","DOI":"10.1038\/35020000","article-title":"DNA sequence of both chromosomes of the cholera pathogen <span class=\"italique\">Vibrio cholerae<\/span>","volume":"406","author":"Heidelberg, J. F.","year":"2000","unstructured":"[27] Heidelberg, J. F.; Eisen, J. A.; Nelson, W. C.; Clayton, R. A.; Gwinn, M. L.; Dodson, R. J.; Haft, D. H.; Hickey, E. K.; Peterson, J. D.; Umayam, L.; Gill, S. R.; Nelson, K. E.; Read, T. D.; Tettelin, H.; Richardson, D.; Ermolaeva, M. D.; Vamathevan, J.; Bass, S.; Qin, H.; Dragoi, I.; Sellers, P.; McDonald, L.; Utterback, T.; Fleishmann, R. D.; Nierman, W. C.; White, O.; Salzberg, S. L.; Smith, H. O.; Colwell, R. R.; Mekalanos, J. J.; Venter, J. C.; Fraser, C. M. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae, Nature, Volume 406 (2000), pp. 477-483","journal-title":"Nature"},{"key":"key2025102316432027373_28","doi-asserted-by":"publisher","first-page":"15442","DOI":"10.1073\/pnas.0907787106","article-title":"Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic <span class=\"italique\">Vibrio cholerae<\/span>","volume":"106","author":"Chun, J.","year":"2009","unstructured":"[28] Chun, J.; Grim, C. J.; Hasan, N. A.; Lee, J. H.; Choi, S. Y.; Haley, B. J.; Taviani, E.; Jeon, Y.-S.; Kim, D. W.; Lee, J.-H.; Brettin, T. S.; Bruce, D. C.; Challacombe, J. F.; Detter, J. C.; Han, C. S.; Munk, A. C.; Chertkov, O.; Meincke, L.; Saunders, E.; Walters, R. A.; Huq, A.; Nair, G. B.; Colwell, R. R. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae, Proc. Natl. Acad. Sci. USA, Volume 106 (2009), pp. 15442-15447","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key2025102316432027373_29","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0004053","article-title":"A recalibrated molecular clock and independent origins for the cholera pandemic clones","volume":"3","author":"Feng, L.","year":"2008","unstructured":"[29] Feng, L.; Reeves, P. R.; Lan, R.; Ren, Y.; Gao, C.; Zhou, Z.; Ren, Y.; Cheng, J.; Wang, W.; Wang, J.; Qian, W.; Li, D.; Wang, L. A recalibrated molecular clock and independent origins for the cholera pandemic clones, PLoS One, Volume 3 (2008), e4053","journal-title":"PLoS One"},{"key":"key2025102316432027373_30","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1038\/nature10392","article-title":"Evidence for several waves of global transmission in the seventh cholera pandemic","volume":"477","author":"Mutreja, A.","year":"2011","unstructured":"[30] Mutreja, A.; Kim, D. W.; Thomson, N. R.; Connor, T. R.; Lee, J. H.; Kariuki, S.; Croucher, N. J.; Choi, S. Y.; Harris, S. R.; Lebens, M.; Niyogi, S. K.; Kim, E. J.; Ramamurthy, T.; Chun, J.; Wood, J. L. N.; Clemens, J. D.; Czerkinsky, C.; Nair, G. B.; Holmgren, J.; Parkhill, J.; Dougan, G. Evidence for several waves of global transmission in the seventh cholera pandemic, Nature, Volume 477 (2011), pp. 462-465","journal-title":"Nature"},{"key":"key2025102316432027373_31","doi-asserted-by":"publisher","first-page":"358","DOI":"10.1016\/j.cell.2012.01.053","article-title":"Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for <span class=\"italique\">V.\u00a0cholerae<\/span> virulence","volume":"149","author":"Davies, B. W.","year":"2012","unstructured":"[31] Davies, B. W.; Bogard, R. W.; Young, T. S.; Mekalanos, J. J. Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V.\u00a0cholerae virulence, Cell, Volume 149 (2012), pp. 358-370","journal-title":"Cell"},{"key":"key2025102316432027373_32","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1009624","article-title":"<span class=\"italique\">Vibrio cholerae<\/span> mysterious seventh Pandemic island (VSP-II) encodes novel Zur-regulated zinc starvation genes involved in chemotaxis and cell congregation","volume":"17","author":"Murphy, S. G.","year":"2021","unstructured":"[32] Murphy, S. G.; Johnson, B. A.; Ledoux, C. M.; D\u00f6rr, T. Vibrio cholerae mysterious seventh Pandemic island (VSP-II) encodes novel Zur-regulated zinc starvation genes involved in chemotaxis and cell congregation, PLoS Genet., Volume 17 (2021), e1009624","journal-title":"PLoS Genet."},{"key":"key2025102316432027373_33","doi-asserted-by":"publisher","first-page":"S701","DOI":"10.1093\/infdis\/jiab440","article-title":"Contrasting epidemiology of cholera in Bangladesh and Africa","volume":"224","author":"Sack, D. A.","year":"2021","unstructured":"[33] Sack, D. A.; Debes, A. K.; Ateudjieu, J.; Bwire, G.; Ali, M.; Ngwa, M. C.; Mwaba, J.; Chilengi, R.; Orach, C. C.; Boru, W.; Mohamed, A. A.; Ram, M.; George, C. M.; Stine, O. C. Contrasting epidemiology of cholera in Bangladesh and Africa, J.\u00a0Infect. Dis., Volume 224 (2021), p. S701-S709","journal-title":"J.\u00a0Infect. Dis."},{"key":"key2025102316432027373_34","doi-asserted-by":"publisher","first-page":"2025","DOI":"10.1126\/science.274.5295.2025","article-title":"Global climate and infectious disease: the cholera paradigm","volume":"274","author":"Colwell, R. R.","year":"1996","unstructured":"[34] Colwell, R. R. Global climate and infectious disease: the cholera paradigm, Science, Volume 274 (1996), pp. 2025-2031","journal-title":"Science"},{"key":"key2025102316432027373_35","doi-asserted-by":"publisher","first-page":"757","DOI":"10.1128\/CMR.15.4.757-770.2002","article-title":"Effects of global climate on infectious disease: the cholera model","volume":"15","author":"Lipp, E. K.","year":"2002","unstructured":"[35] Lipp, E. K.; Huq, A.; Colwell, R. R. Effects of global climate on infectious disease: the cholera model, Clin. Microbiol. Rev., Volume 15 (2002), pp. 757-770","journal-title":"Clin. Microbiol. Rev."},{"key":"key2025102316432027373_36","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-19185-y","article-title":"The seventh pandemic of cholera in Europe revisited by microbial genomics","volume":"11","author":"Oprea, M.","year":"2020","unstructured":"[36] Oprea, M.; Njamkepo, E.; Cristea, D.; Zhukova, A.; Clark, C. G.; Kravetz, A. N.; Monakhova, E.; Ciontea, A. S.; Cojocaru, R.; Rauzier, J.; Damian, M.; Gascuel, O.; Quilici, M.-L.; Weill, F.-X. The seventh pandemic of cholera in Europe revisited by microbial genomics, Nat. Commun., Volume 11 (2020), 5347","journal-title":"Nat. Commun."},{"key":"key2025102316432027373_37","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1126\/science.aad5901","article-title":"Genomic history of the seventh pandemic of cholera in Africa","volume":"358","author":"Weill, F.-X.","year":"2017","unstructured":"[37] Weill, F.-X.; Domman, D.; Njamkepo, E.; Tarr, C.; Rauzier, J.; Fawal, N.; Keddy, K. H.; Salje, H.; Moore, S.; Mukhopadhyay, A. K.; Bercion, R.; Luquero, F. J.; Ngandjio, A.; Dosso, M.; Monakhova, E.; Garin, B.; Bouchier, C.; Pazzani, C.; Mutreja, A.; Grunow, R.; Sidikou, F.; Bonte, L.; Breurec, S.; Damian, M.; Njanpop-Lafourcade, B.-M.; Sapriel, G.; Page, A.-L.; Hamze, M.; Henkens, M.; Chowdhury, G.; Mengel, M.; Koeck, J.-L.; Fournier, J.-M.; Dougan, G.; Grimont, P. A. D.; Parkhill, J.; Holt, K. E.; Piarroux, R.; Ramamurthy, T.; Quilici, M.-L.; Thomson, N. R. Genomic history of the seventh pandemic of cholera in Africa, Science, Volume 358 (2017), pp. 785-789","journal-title":"Science"},{"key":"key2025102316432027373_38","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1056\/NEJMc2004773","article-title":"Highly resistant cholera outbreak strain in Zimbabwe","volume":"383","author":"Mashe, T.","year":"2020","unstructured":"[38] Mashe, T.; Domman, D.; Tarupiwa, A.; Manangazira, P.; Phiri, I.; Masunda, K.; Chonzi, P.; Njamkepo, E.; Ramudzulu, M.; Mtapuri-Zinyowera, S.; Smith, A. M.; Weill, F.-X. Highly resistant cholera outbreak strain in Zimbabwe, New Engl. J. Med., Volume 383 (2020), pp. 687-689","journal-title":"New Engl. J. Med."},{"key":"key2025102316432027373_39","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1038\/s41586-018-0818-3","article-title":"Genomic insights into the 2016\u20132017 cholera epidemic in Yemen","volume":"565","author":"Weill, F.-X.","year":"2019","unstructured":"[39] Weill, F.-X.; Domman, D.; Njamkepo, E.; Almesbahi, A. A.; Naji, M.; Nasher, S. S.; Rakesh, A.; Assiri, A. M.; Sharma, N. C.; Kariuki, S.; Pourshafie, M. R.; Rauzier, J.; Abubakar, A.; Carter, J. Y.; Wamala, J. F.; Seguin, C.; Bouchier, C.; Malliavin, T.; Bakhshi, B.; Abulmaali, H. H. N.; Kumar, D.; Njoroge, S. M.; Malik, M. R.; Kiiru, J.; Luquero, F. J.; Azman, A. S.; Ramamurthy, T.; Thomson, N. R.; Quilici, M.-L. Genomic insights into the 2016\u20132017 cholera epidemic in Yemen, Nature, Volume 565 (2019), pp. 230-233","journal-title":"Nature"},{"key":"key2025102316432027373_40","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1016\/S0020-2452(99)80002-5","article-title":"Cholera epidemiology in Latin America and perspectives for eradication","volume":"96","author":"Kumate, J.","year":"1998","unstructured":"[40] Kumate, J.; Sep\u00falveda, J.; Guti\u00e9rrez, G. Cholera epidemiology in Latin America and perspectives for eradication, Bull. Inst. Pasteur., Volume 96 (1998), pp. 217-226","journal-title":"Bull. Inst. Pasteur."},{"issue":"31","key":"key2025102316432027373_41","first-page":"257","volume":"77","author":"World Health Organization","year":"2002","unstructured":"[41] World Health Organization Wkly. Epidemiol. Rec., 77 (2002) no. 31, pp. 257-268","journal-title":"Wkly. Epidemiol. Rec."},{"key":"key2025102316432027373_42","doi-asserted-by":"publisher","DOI":"10.1038\/nmicrobiol.2016.18","article-title":"Is El Ni\u00f1o a long-distance corridor for waterborne disease?","volume":"1","author":"Martinez-Urtaza, J.","year":"2016","unstructured":"[42] Martinez-Urtaza, J.; Trinanes, J.; Gonzalez-Escalona, N.; Baker-Austin, C. Is El Ni\u00f1o a long-distance corridor for waterborne disease?, Nat. Microbiol., Volume 1 (2016), 16018","journal-title":"Nat. Microbiol."},{"key":"key2025102316432027373_43","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0008045","article-title":"Spatial dynamics and the basic reproduction number of the 1991\u20131997 cholera epidemic in Peru","volume":"14","author":"Smirnova, A.","year":"2020","unstructured":"[43] Smirnova, A.; Sterrett, N.; Mujica, O. J.; Munayco, C.; Su\u00e1rez, L.; Viboud, C.; Chowell, G. Spatial dynamics and the basic reproduction number of the 1991\u20131997 cholera epidemic in Peru, PLoS Negl. Trop. Dis., Volume 14 (2020), e0008045","journal-title":"PLoS Negl. Trop. Dis."},{"issue":"4","key":"key2025102316432027373_44","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.00398-13","article-title":"Evolutionary dynamics of <span class=\"italique\">Vibrio cholerae<\/span> O1 following a single-source introduction to Haiti","volume":"4","author":"Katz, L. S.","year":"2013","unstructured":"[44] Katz, L. S.; Petkau, A.; Beaulaurier, J.; Tyler, S.; Antonova, E. S.; Turnsek, M. A.; Guo, Y.; Wang, S.; Paxinos, E. E.; Orata, F.; Gladney, L. M.; Stroika, S.; Folster, J. P.; Rowe, L.; Freeman, M. M.; Knox, N.; Frace, M.; Boncy, J.; Graham, M.; Hammer, B. K.; Boucher, Y.; Bashir, A.; Hanage, W. P.; Van Domselaar, G.; Tarr, C. L. Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti, mBio, Volume 4 (2013) no. 4, e00398-13","journal-title":"mBio"},{"key":"key2025102316432027373_45","article-title":"Epidemiological Update Cholera. 11 October 2018, Washington, D.C. PAHO\/WHO","author":"Pan American Health Organization, World Health Organization","year":"2018","unstructured":"[45] Pan American Health Organization, World Health Organization Epidemiological Update Cholera. 11 October 2018, Washington, D.C. PAHO\/WHO, 2018 (http:\/\/www.paho.org\/)"},{"key":"key2025102316432027373_46","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1056\/NEJMoa1012928","article-title":"The origin of the Haitian cholera outbreak strain","volume":"364","author":"Chin, C.-S.","year":"2011","unstructured":"[46] Chin, C.-S.; Sorenson, J.; Harris, J. B.; Robins, W. P.; Charles, R. C.; Jean-Charles, R. R.; Bullard, J.; Webster, D. R.; Kasarskis, A.; Peluso, P.; Paxinos, E. E.; Yamaichi, Y.; Calderwood, S. B.; Mekalanos, J. J.; Schadt, E. E.; Waldor, M. K. The origin of the Haitian cholera outbreak strain, New Engl. J. Med., Volume 364 (2011), pp. 33-42","journal-title":"New Engl. J. Med."},{"key":"key2025102316432027373_47","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0006492","article-title":"Molecular characterization of <span class=\"italique\">Vibrio cholerae<\/span> responsible for cholera epidemics in Uganda by PCR, MLVA and WGS","volume":"12","author":"Bwire, G.","year":"2018","unstructured":"[47] Bwire, G.; Sack, D. A.; Almeida, M.; Li, S.; Voeglein, J. B.; Debes, A. K.; Kagirita, A.; Buyinza, A. W.; Orach, C. G.; Stine, O. C. Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS, PLoS Negl. Trop. Dis., Volume 12 (2018), e0006492","journal-title":"PLoS Negl. Trop. Dis."},{"key":"key2025102316432027373_48","doi-asserted-by":"publisher","first-page":"e680","DOI":"10.1016\/S2214-109X(18)30230-4","article-title":"Cholera epidemic in Yemen, 2016\u201318: an analysis of surveillance data","volume":"6","author":"Camacho, A.","year":"2018","unstructured":"[48] Camacho, A.; Bouhenia, M.; Alyusfi, R.; Alkohlani, A.; Naji, M. A. M.; de Radigu\u00e8s, X.; Abubakar, A. M.; Almoalmi, A.; Seguin, C.; Sagrado, M. J.; Poncin, M.; McRae, M.; Musoke, M.; Rakesh, A.; Porten, K.; Haskew, C.; Atkins, K. E.; Eggo, R. M.; Azman, A. S.; Broekhuijsen, M.; Saatcioglu, M. A.; Pezzoli, L.; Quilici, M.-L.; Al-Mesbahy, A. R.; Zagaria, N.; Luquero, F. J. Cholera epidemic in Yemen, 2016\u201318: an analysis of surveillance data, Lancet Glob. Health, Volume 6 (2018), p. e680-e690","journal-title":"Lancet Glob. Health"},{"key":"key2025102316432027373_49","article-title":"Cholera situation in Yemen - WHO-EM\/CSR\/434\/E","author":"World Health Organization Eastern Mediterranean Regional Office (WHO EMRO)","year":"2021","unstructured":"[49] World Health Organization Eastern Mediterranean Regional Office (WHO EMRO) Cholera situation in Yemen - WHO-EM\/CSR\/434\/E, 2021 (www.emro.who.int)"},{"key":"key2025102316432027373_50","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1005072","article-title":"The role of China in the global spread of the current cholera pandemic","volume":"11","author":"Didelot, X.","year":"2015","unstructured":"[50] Didelot, X.; Pang, B.; Zhou, Z.; McCann, A.; Ni, P.; Li, D.; Achtman, M.; Kan, B. The role of China in the global spread of the current cholera pandemic, PLoS Genet., Volume 11 (2015), e1005072","journal-title":"PLoS Genet."},{"key":"key2025102316432027373_51","doi-asserted-by":"publisher","first-page":"479","DOI":"10.1016\/j.tim.2015.03.010","article-title":"Whole-genome sequence comparisons reveal the evolution of <span class=\"italique\">Vibrio cholerae<\/span> O1","volume":"23","author":"Kim, E. J.","year":"2015","unstructured":"[51] Kim, E. J.; Lee, C. H.; Nair, G. B.; Kim, D. W. Whole-genome sequence comparisons reveal the evolution of Vibrio cholerae O1, Trends Microbiol., Volume 23 (2015), pp. 479-489","journal-title":"Trends Microbiol."},{"key":"key2025102316432027373_52","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1146\/annurev-virology-091919-072020","article-title":"Bacteriophage ICP1: a persistent predator of <span class=\"italique\">Vibrio cholerae<\/span>","volume":"8","author":"Boyd, C. M.","year":"2021","unstructured":"[52] Boyd, C. M.; Angermeyer, A.; Hays, S. G.; Barth, Z. K.; Patel, K. M.; Seed, K. D. Bacteriophage ICP1: a persistent predator of Vibrio cholerae, Annu. Rev. Virol., Volume 8 (2021), pp. 285-304","journal-title":"Annu. Rev. Virol."},{"key":"key2025102316432027373_53","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1006838","article-title":"A highly specific phage defense system is a conserved feature of the <span class=\"italique\">Vibrio cholerae<\/span> mobilome","volume":"13","author":"O\u2019Hara, B. J.","year":"2017","unstructured":"[53] O\u2019Hara, B. J.; Barth, Z. K.; McKitterick, A. C.; Seed, K. D. A highly specific phage defense system is a conserved feature of the Vibrio cholerae mobilome, PLoS Genet., Volume 13 (2017), e1006838","journal-title":"PLoS Genet."},{"key":"key2025102316432027373_54","doi-asserted-by":"publisher","DOI":"10.1128\/mbio.03088-21","article-title":"Evolutionary sweeps of subviral parasites and their phage host bring unique parasite variants and disappearance of a phage CRISPR-Cas system","author":"Angermeyer, A.","year":"2022","unstructured":"[54] Angermeyer, A.; Hays, S. G.; Nguyen, M. H. T.; Johura, F.-T.; Sultana, M.; Alam, M.; Seed, K. D. Evolutionary sweeps of subviral parasites and their phage host bring unique parasite variants and disappearance of a phage CRISPR-Cas system, mBio (2022), e0308821","journal-title":"mBio"},{"key":"key2025102316432027373_55","doi-asserted-by":"publisher","first-page":"2100","DOI":"10.3201\/eid2111.150762","article-title":"Sensitivity to Polymyxin B in El Tor <span class=\"italique\">Vibrio cholerae<\/span> O1 strain, Kolkata, India","volume":"21","author":"Samanta, P.","year":"2015","unstructured":"[55] Samanta, P.; Ghosh, P.; Chowdhury, G.; Ramamurthy, T.; Mukhopadhyay, A. K. Sensitivity to Polymyxin B in El Tor Vibrio cholerae O1 strain, Kolkata, India, Emerg. Infect. Dis., Volume 21 (2015), pp. 2100-2102","journal-title":"Emerg. Infect. Dis."},{"key":"key2025102316432027373_56","doi-asserted-by":"publisher","DOI":"10.1126\/science.abg2166","article-title":"Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts","volume":"373","author":"LeGault, K. N.","year":"2021","unstructured":"[56] LeGault, K. N.; Hays, S. G.; Angermeyer, A.; McKitterick, A. C.; Johura, F.; Sultana, M.; Ahmed, T.; Alam, M.; Seed, K. D. Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts, Science, Volume 373 (2021), eabg2166","journal-title":"Science"},{"key":"key2025102316432027373_57","doi-asserted-by":"publisher","first-page":"R1124","DOI":"10.1016\/j.cub.2020.06.097","article-title":"Microbe hunting in the modern era: reflecting on a decade of microbial genomic epidemiology","volume":"30","author":"Baker, K. S.","year":"2020","unstructured":"[57] Baker, K. S. Microbe hunting in the modern era: reflecting on a decade of microbial genomic epidemiology, Curr. Biol., Volume 30 (2020), p. R1124-R1124","journal-title":"Curr. Biol."},{"key":"key2025102316432027373_58","article-title":"Ending cholera, a global roadmap to 2030","author":"Global Task Force on Cholera Control","year":"2017","unstructured":"[58] Global Task Force on Cholera Control Ending cholera, a global roadmap to 2030, 2017 (https:\/\/www.gtfcc.org\/wp-content\/uploads\/2019\/10\/gtfcc-ending-cholera-a-global-roadmap-to-2030.pdf)"},{"key":"key2025102316432027373_59","doi-asserted-by":"publisher","first-page":"706","DOI":"10.1126\/science.358.6364.706","article-title":"Genomes rewrite cholera\u2019s global story","volume":"358","author":"Kupferschmidt, K.","year":"2017","unstructured":"[59] Kupferschmidt, K. Genomes rewrite cholera\u2019s global story, Science, Volume 358 (2017), pp. 706-707","journal-title":"Science"}],"container-title":["Comptes Rendus. Biologies"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/comptes-rendus.academie-sciences.fr\/biologies\/item\/10.5802\/crbiol.77.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,23]],"date-time":"2025-10-23T14:59:38Z","timestamp":1761231578000},"score":1,"resource":{"primary":{"URL":"https:\/\/comptes-rendus.academie-sciences.fr\/biologies\/articles\/10.5802\/crbiol.77\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,5,11]]},"references-count":59,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2022]]}},"alternative-id":["10.5802\/crbiol.77"],"URL":"https:\/\/doi.org\/10.5802\/crbiol.77","relation":{},"ISSN":["1631-0691","1768-3238"],"issn-type":[{"value":"1631-0691","type":"print"},{"value":"1768-3238","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,5,11]]}}}