{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T19:09:04Z","timestamp":1740164944785,"version":"3.37.3"},"reference-count":63,"publisher":"Korea Genome Organization","issue":"4","license":[{"start":{"date-parts":[[2023,12,29]],"date-time":"2023-12-29T00:00:00Z","timestamp":1703808000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Throne Ph.D. Scholarship Programme","award":["HRD6401028"],"award-info":[{"award-number":["HRD6401028"]}]},{"name":"Kasetsart University and the National Science and Technology Development Agency","award":["6417400247"],"award-info":[{"award-number":["6417400247"]}]},{"name":"Ministry of Higher Education, Science, Research and Innovation","award":["AG-BIO\/MHESI no. 60-003-005"],"award-info":[{"award-number":["AG-BIO\/MHESI no. 60-003-005"]}]},{"DOI":"10.13039\/501100004704","name":"National Research Council of Thailand","doi-asserted-by":"crossref","award":["N42A650233"],"award-info":[{"award-number":["N42A650233"]}],"id":[{"id":"10.13039\/501100004704","id-type":"DOI","asserted-by":"crossref"}]},{"name":"High-Potential Research Team Grant Program","award":["N42A660605"],"award-info":[{"award-number":["N42A660605"]}]}],"content-domain":{"domain":["genominfo.org"],"crossmark-restriction":true},"short-container-title":["Genomics Inform"],"published-print":{"date-parts":[[2023,12,31]]},"abstract":"<jats:p>Silver barb (Barbonymus gonionotus) is among the most economically important freshwater fish species in Thailand. It ranks fourth in economic value and third in production weight for fisheries and culture in Thailand. An XX\/XY sex-determination system based on gynogenesis was previously reported for this fish. In this study, the molecular basis underlying the sex-determination system was further investigated. Genome-wide single-nucleotide polymorphism data were generated for 32 captive-bred silver barb individuals, previously scored by phenotypic sex, to identify sex-linked regions associated with sex determination. Sixty-three male-linked loci, indicating putative XY chromosomes, were identified. Male-specific loci were not observed, which indicates that the putative Y chromosome is young and the sex determination region is cryptic. A homology search revealed that most male-linked loci were homologous to the Mariner\/Tc1 and Gypsy transposable elements and are probably the remnants of an initial accumulation of repeats on the Y chromosome from the early stages of sex chromosome differentiation. This research provides convincing insights into the mechanism of sex determination and reveals the potential sex determination regions in silver barb. The study provides the basic data necessary for increasing the commercial value of silver barbs through genetic improvements.<\/jats:p>","DOI":"10.5808\/gi.23075","type":"journal-article","created":{"date-parts":[[2023,12,29]],"date-time":"2023-12-29T04:57:40Z","timestamp":1703825860000},"page":"e47","update-policy":"https:\/\/doi.org\/10.5808\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Genome-wide SNP analysis provides insights into the XX\/XY sex-determination system in silver barb (Barbonymus 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