{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"bioRxiv"}],"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T17:59:11Z","timestamp":1773338351177,"version":"3.50.1"},"posted":{"date-parts":[[2026,3,9]]},"group-title":"Immunology","reference-count":84,"publisher":"openRxiv","license":[{"start":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T00:00:00Z","timestamp":1773014400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.biorxiv.org\/about\/FAQ#license"}],"funder":[{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"crossref","award":["5T32GM007356"],"award-info":[{"award-number":["5T32GM007356"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2026,3,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                <jats:p>\n                  There is growing evidence that neonates harbor innate-like CD8a\n                  <jats:sup>+<\/jats:sup>\n                  T cell subsets that contribute to both protection and hyper-inflammatory states. It remains unclear, however, where these innate-like features are found among the many conventional and unconventional T cell populations that can upregulate the CD8 receptor. Further delineation of these unique populations and functions, with a focus on CD8ab co-expression, will enable studies that seek to understand the unique immune features in conventional T cell populations that are present during fetal and early postnatal life. We used cord blood from infants across the full viable gestational age range to examine phenotypic and transcriptional heterogeneity, with a particular focus on the na\u00efve T cell pool. We report a set of fetally-derived and innate-like na\u00efve CD8\u03b1\u03b2\n                  <jats:sup>+<\/jats:sup>\n                  T cells (\u2018FITs\u2019) that are marked by their KLRG1\n                  <jats:sup>+<\/jats:sup>\n                  CD161\n                  <jats:sup>+<\/jats:sup>\n                  phenotype, unique transcriptomic features and which are sparsely detected in adult peripheral blood. Additionally, using T cell receptor repertoire profiling, we can distinguish FITs from well-described and semi-invariant unconventional T cell populations such as mucosa-associated invariant T cells. Our delineation of FITs\u2019 unique features will enable future investigation into their ontogeny and tissue distribution, and ultimately their role in immune-related outcomes in preterm infants.\n                <\/jats:p>","DOI":"10.64898\/2026.03.05.706693","type":"posted-content","created":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T20:20:20Z","timestamp":1773087620000},"source":"Crossref","is-referenced-by-count":0,"title":["Single cell analysis of neonatal na\u00efve CD8\u03b1\n                  <sup>+<\/sup>\n                  T cells reveals novel subsets bridging the innate-adaptive spectrum"],"prefix":"10.64898","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3022-0525","authenticated-orcid":false,"given":"Adam","family":"Geber","sequence":"first","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brandon","family":"Groff","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jordan","family":"McMurry","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nathan","family":"Laniewski","sequence":"additional","affiliation":[{"name":"Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adam","family":"Tyrlik","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Connor","family":"Kean","sequence":"additional","affiliation":[{"name":"Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ruoqiao","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Darline","family":"Castro-Melendez","sequence":"additional","affiliation":[{"name":"Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Janiret","family":"Narvaez-Miranda","sequence":"additional","affiliation":[{"name":"Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Natalie","family":"Vance","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gloria","family":"Pryhuber","sequence":"additional","affiliation":[{"name":"Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy","family":"Mosmann","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian D.","family":"Rudd","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, Cornell University, Ithaca, NY 14853"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juilee","family":"Thakar","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9435-8673","authenticated-orcid":false,"given":"David J.","family":"Topham","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew","family":"Grimson","sequence":"additional","affiliation":[{"name":"Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kristin","family":"Scheible","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"},{"name":"Department of Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"54368","reference":[{"key":"2026031200400841000_2026.03.05.706693v1.1","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa1403489"},{"key":"2026031200400841000_2026.03.05.706693v1.2","doi-asserted-by":"publisher","DOI":"10.1038\/s41577-023-00874-w"},{"key":"2026031200400841000_2026.03.05.706693v1.3","doi-asserted-by":"publisher","DOI":"10.1038\/nri.2017.54"},{"key":"2026031200400841000_2026.03.05.706693v1.4","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-12-394299-9.00003-5"},{"key":"2026031200400841000_2026.03.05.706693v1.5","doi-asserted-by":"publisher","DOI":"10.1038\/s41577-020-0332-3"},{"key":"2026031200400841000_2026.03.05.706693v1.6","doi-asserted-by":"publisher","DOI":"10.1016\/0092-8674(89)90748-4"},{"key":"2026031200400841000_2026.03.05.706693v1.7","doi-asserted-by":"publisher","DOI":"10.1007\/s00281-022-00931-x"},{"key":"2026031200400841000_2026.03.05.706693v1.8","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-cellbio-100616-060439"},{"key":"2026031200400841000_2026.03.05.706693v1.9","doi-asserted-by":"publisher","DOI":"10.1084\/jem.20181483"},{"key":"2026031200400841000_2026.03.05.706693v1.10","doi-asserted-by":"publisher","DOI":"10.1038\/ni.3298"},{"key":"2026031200400841000_2026.03.05.706693v1.11","doi-asserted-by":"publisher","DOI":"10.1126\/science.abf0095"},{"key":"2026031200400841000_2026.03.05.706693v1.12","doi-asserted-by":"publisher","DOI":"10.1038\/nri.2018.12"},{"key":"2026031200400841000_2026.03.05.706693v1.13","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2024.1412513"},{"key":"2026031200400841000_2026.03.05.706693v1.14","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2013.00223"},{"key":"2026031200400841000_2026.03.05.706693v1.15","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2025.115587"},{"key":"2026031200400841000_2026.03.05.706693v1.16","doi-asserted-by":"publisher","DOI":"10.1101\/2025.03.17.643805"},{"key":"2026031200400841000_2026.03.05.706693v1.17","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2020.556695"},{"key":"2026031200400841000_2026.03.05.706693v1.18","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2024.114705"},{"key":"2026031200400841000_2026.03.05.706693v1.19","doi-asserted-by":"publisher","DOI":"10.1126\/sciimmunol.abf0125"},{"key":"2026031200400841000_2026.03.05.706693v1.20","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-immunol-072319-033325"},{"key":"2026031200400841000_2026.03.05.706693v1.21","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2421106122"},{"key":"2026031200400841000_2026.03.05.706693v1.22","doi-asserted-by":"publisher","DOI":"10.1126\/sciimmunol.adf8776"},{"key":"2026031200400841000_2026.03.05.706693v1.23","doi-asserted-by":"publisher","DOI":"10.1016\/j.immuni.2025.07.002"},{"key":"2026031200400841000_2026.03.05.706693v1.24","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2020.108573"},{"key":"2026031200400841000_2026.03.05.706693v1.25","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2021.714090"},{"key":"2026031200400841000_2026.03.05.706693v1.26","doi-asserted-by":"publisher","DOI":"10.1016\/j.clim.2015.07.003"},{"key":"2026031200400841000_2026.03.05.706693v1.27","doi-asserted-by":"publisher","DOI":"10.1016\/j.isci.2022.104007"},{"key":"2026031200400841000_2026.03.05.706693v1.28","doi-asserted-by":"publisher","DOI":"10.1101\/2024.11.18.24317489"},{"key":"2026031200400841000_2026.03.05.706693v1.29","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2020.107773"},{"key":"2026031200400841000_2026.03.05.706693v1.30","doi-asserted-by":"publisher","DOI":"10.1038\/s41385-021-00391-w"},{"key":"2026031200400841000_2026.03.05.706693v1.31","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-immunol-082323-025943"},{"key":"2026031200400841000_2026.03.05.706693v1.32","doi-asserted-by":"publisher","DOI":"10.1172\/jci.insight.93739"},{"key":"2026031200400841000_2026.03.05.706693v1.33","doi-asserted-by":"publisher","DOI":"10.1038\/nm.3670"},{"key":"2026031200400841000_2026.03.05.706693v1.34","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-14923-8"},{"key":"2026031200400841000_2026.03.05.706693v1.35","doi-asserted-by":"publisher","DOI":"10.1172\/jci.insight.96724"},{"key":"2026031200400841000_2026.03.05.706693v1.36","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2014.09.045"},{"key":"2026031200400841000_2026.03.05.706693v1.37","doi-asserted-by":"publisher","DOI":"10.1038\/mi.2015.69"},{"key":"2026031200400841000_2026.03.05.706693v1.38","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1412058112"},{"key":"2026031200400841000_2026.03.05.706693v1.39","doi-asserted-by":"publisher","DOI":"10.1126\/sciimmunol.abn8531"},{"key":"2026031200400841000_2026.03.05.706693v1.40","doi-asserted-by":"publisher","DOI":"10.1111\/imcb.12021"},{"key":"2026031200400841000_2026.03.05.706693v1.41","doi-asserted-by":"publisher","DOI":"10.1038\/s41590-023-01575-1"},{"key":"2026031200400841000_2026.03.05.706693v1.42","doi-asserted-by":"publisher","DOI":"10.1016\/j.immuni.2024.08.019"},{"key":"2026031200400841000_2026.03.05.706693v1.43","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.176.3.1439"},{"key":"2026031200400841000_2026.03.05.706693v1.44","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.154.3.1265"},{"key":"2026031200400841000_2026.03.05.706693v1.45","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.1002766"},{"key":"2026031200400841000_2026.03.05.706693v1.46","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2020.00206"},{"key":"2026031200400841000_2026.03.05.706693v1.47","doi-asserted-by":"publisher","DOI":"10.1038\/s41590-018-0274-0"},{"key":"2026031200400841000_2026.03.05.706693v1.48","doi-asserted-by":"publisher","DOI":"10.1084\/jem.20191030"},{"key":"2026031200400841000_2026.03.05.706693v1.49","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-019-08604-4"},{"key":"2026031200400841000_2026.03.05.706693v1.50","doi-asserted-by":"publisher","DOI":"10.1111\/imr.13185"},{"key":"2026031200400841000_2026.03.05.706693v1.51","doi-asserted-by":"publisher","DOI":"10.1093\/cei\/uxae038"},{"key":"2026031200400841000_2026.03.05.706693v1.52","doi-asserted-by":"publisher","DOI":"10.1084\/jem.20142110"},{"key":"2026031200400841000_2026.03.05.706693v1.53","doi-asserted-by":"publisher","DOI":"10.1111\/imm.12925"},{"key":"2026031200400841000_2026.03.05.706693v1.54","doi-asserted-by":"publisher","DOI":"10.1038\/ni.3565"},{"key":"2026031200400841000_2026.03.05.706693v1.55","doi-asserted-by":"publisher","DOI":"10.1038\/s12276-025-01509-x"},{"key":"2026031200400841000_2026.03.05.706693v1.56","doi-asserted-by":"publisher","DOI":"10.1093\/bioadv\/vbac016"},{"key":"2026031200400841000_2026.03.05.706693v1.57","doi-asserted-by":"publisher","DOI":"10.1016\/j.coi.2023.102299"},{"key":"2026031200400841000_2026.03.05.706693v1.58","doi-asserted-by":"publisher","DOI":"10.1038\/s41577-025-01238-2"},{"key":"2026031200400841000_2026.03.05.706693v1.59","doi-asserted-by":"publisher","DOI":"10.1182\/blood-2011-05-353789"},{"key":"2026031200400841000_2026.03.05.706693v1.60","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0914839107"},{"key":"2026031200400841000_2026.03.05.706693v1.61","doi-asserted-by":"publisher","DOI":"10.1002\/eji.200940257"},{"key":"2026031200400841000_2026.03.05.706693v1.62","doi-asserted-by":"publisher","DOI":"10.1038\/srep12113"},{"key":"2026031200400841000_2026.03.05.706693v1.63","doi-asserted-by":"publisher","DOI":"10.1016\/j.mucimm.2024.03.011"},{"key":"2026031200400841000_2026.03.05.706693v1.64","doi-asserted-by":"publisher","DOI":"10.1101\/2025.02.01.636039"},{"key":"2026031200400841000_2026.03.05.706693v1.65","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0914839107"},{"key":"2026031200400841000_2026.03.05.706693v1.66","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2019.00909"},{"key":"2026031200400841000_2026.03.05.706693v1.67","doi-asserted-by":"publisher","DOI":"10.1007\/s00018-011-0802-7"},{"key":"2026031200400841000_2026.03.05.706693v1.68","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.181.7.4507"},{"key":"2026031200400841000_2026.03.05.706693v1.69","doi-asserted-by":"publisher","DOI":"10.1038\/s41594-024-01400-9"},{"key":"2026031200400841000_2026.03.05.706693v1.70","doi-asserted-by":"publisher","DOI":"10.1016\/j.tibs.2023.07.002"},{"key":"2026031200400841000_2026.03.05.706693v1.71","doi-asserted-by":"publisher","DOI":"10.1126\/scitranslmed.adr0942"},{"key":"2026031200400841000_2026.03.05.706693v1.72","doi-asserted-by":"publisher","DOI":"10.1016\/j.immuni.2018.12.010"},{"key":"2026031200400841000_2026.03.05.706693v1.73","doi-asserted-by":"publisher","DOI":"10.1002\/eji.200425282"},{"key":"2026031200400841000_2026.03.05.706693v1.74","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M109.038802"},{"key":"2026031200400841000_2026.03.05.706693v1.75","doi-asserted-by":"publisher","DOI":"10.1007\/s11357-009-9100-9"},{"key":"2026031200400841000_2026.03.05.706693v1.76","doi-asserted-by":"publisher","DOI":"10.1016\/j.immuni.2018.03.015"},{"key":"2026031200400841000_2026.03.05.706693v1.77","doi-asserted-by":"publisher","DOI":"10.1093\/molehr\/gaae040"},{"key":"2026031200400841000_2026.03.05.706693v1.78","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-024-08395-9"},{"key":"2026031200400841000_2026.03.05.706693v1.79","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-025-08713-9"},{"key":"2026031200400841000_2026.03.05.706693v1.80","doi-asserted-by":"publisher","DOI":"10.1126\/sciimmunol.adn3954"},{"key":"2026031200400841000_2026.03.05.706693v1.81","doi-asserted-by":"publisher","DOI":"10.1016\/j.immuni.2023.06.008"},{"key":"2026031200400841000_2026.03.05.706693v1.82","doi-asserted-by":"publisher","DOI":"10.1016\/j.devcel.2019.09.008"},{"key":"2026031200400841000_2026.03.05.706693v1.83","doi-asserted-by":"publisher","DOI":"10.1186\/s12964-024-01714-7"},{"key":"2026031200400841000_2026.03.05.706693v1.84","doi-asserted-by":"publisher","DOI":"10.1101\/gr.240663.118"}],"container-title":[],"original-title":[],"link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.64898\/2026.03.05.706693","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T07:40:15Z","timestamp":1773301215000},"score":1,"resource":{"primary":{"URL":"http:\/\/biorxiv.org\/lookup\/doi\/10.64898\/2026.03.05.706693"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,3,9]]},"references-count":84,"URL":"https:\/\/doi.org\/10.64898\/2026.03.05.706693","relation":{},"subject":[],"published":{"date-parts":[[2026,3,9]]},"subtype":"preprint"}}