{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"bioRxiv"}],"indexed":{"date-parts":[[2026,9,27]],"date-time":"2026-09-27T14:58:49Z","timestamp":1790521129044,"version":"4.1.0"},"posted":{"date-parts":[[2026,9,9]]},"group-title":"Biochemistry","reference-count":39,"publisher":"openRxiv","license":[{"start":{"date-parts":[[2026,9,9]],"date-time":"2026-09-09T00:00:00Z","timestamp":1788912000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"award":["122595"],"award-info":[{"award-number":["122595"]}],"id":[{"id":"https:\/\/ror.org\/04q48ey07","id-type":"ROR","asserted-by":"publisher"}]},{"award":["081259"],"award-info":[{"award-number":["081259"]}],"id":[{"id":"https:\/\/ror.org\/04q48ey07","id-type":"ROR","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2026,9,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                <jats:p>\n                  Glycerol dibiphytanyl glycerol tetraether (GDGT) and macrocyclic diether lipids (mAG) are unique membrane lipids predominantly found in archaea. Both lipids are composed of the same structural components: polar headgroups, glycerol backbones, and ether-linked 40-carbon biphytanyl chains. Tes, a member of the radical\n                  <jats:italic>S<\/jats:italic>\n                  -adenosylmethionine enzyme superfamily, synthesizes the biphytanyl chain by catalyzing carbon-carbon (C-C) bond formation between the terminal carbons of two phytanyl chains of the saturated diether lipid substrate. The coupling between the termini of two phytanyl chains on one glycerophospholipid yields mAG, whereas two couplings between the phytanyl termini of two glycerophospholipids yield GDGT. Quantification of the products and presumed intermediates formed during this multistep reaction has been challenging using mass spectrometry due to the lack of appropriate standards for each species. Herein, we designed and synthesized a diether lipid substrate analog containing a fluorescent\/UV-visible tag linked to the headgroup, enabling the quantification of each species formed during a Tes reaction. Importantly, under laboratory conditions at 45 \u00b0C, we report that GDGT and mAG are initially formed in a 1:1.65 ratio, which differs considerably from the previously assumed ratio.\n                <\/jats:p>","DOI":"10.64898\/2026.09.04.749484","type":"posted-content","created":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T20:15:28Z","timestamp":1789157728000},"source":"Crossref","is-referenced-by-count":0,"title":["A Synthetic Archaeal Lipid Analog Enables Quantification of Substrate, Products, and Intermediates in the Tetraether Synthase Reaction"],"prefix":"10.64898","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2392-126X","authenticated-orcid":false,"given":"Cody T.","family":"Lloyd","sequence":"first","affiliation":[{"name":"Department of Chemistry School of Arts and Sciences, University of Pennsylvania Philadelphia, Pennsylvania, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0381-3686","authenticated-orcid":false,"given":"Bo","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Chemistry School of Arts and Sciences, University of Pennsylvania Philadelphia, Pennsylvania, USA"},{"name":"Department of Biochemistry and Biophysics Perelman School of Medicine, University of Pennsylvania Philadelphia, Pennsylvania, USA"},{"name":"Howard Hughes Medical Institute Chevy Chase, Maryland, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7211-5937","authenticated-orcid":false,"given":"Squire J.","family":"Booker","sequence":"additional","affiliation":[{"name":"Department of Chemistry School of Arts and Sciences, University of Pennsylvania Philadelphia, Pennsylvania, USA"},{"name":"Department of Biochemistry and Biophysics Perelman School of Medicine, University of Pennsylvania Philadelphia, Pennsylvania, USA"},{"name":"Department of Biochemistry and Molecular Biology Pennsylvania State University University Park, Pennsylvania, USA"},{"name":"Department of Chemistry Pennsylvania State University University Park, Pennsylvania, USA"},{"name":"Howard Hughes Medical Institute Chevy Chase, Maryland, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"54368","reference":[{"key":"2026092707455230000_2026.09.04.749484v1.1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1619"},{"key":"2026092707455230000_2026.09.04.749484v1.2","doi-asserted-by":"publisher","DOI":"10.1155\/2012\/789652"},{"key":"2026092707455230000_2026.09.04.749484v1.3","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbalip.2016.12.006"},{"key":"2026092707455230000_2026.09.04.749484v1.4","doi-asserted-by":"publisher","DOI":"10.1007\/s00792-022-01277-w"},{"key":"2026092707455230000_2026.09.04.749484v1.5","doi-asserted-by":"publisher","DOI":"10.1007\/s00239-014-9613-4"},{"key":"2026092707455230000_2026.09.04.749484v1.6","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.87.12.4576"},{"key":"2026092707455230000_2026.09.04.749484v1.7","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00033-06"},{"key":"2026092707455230000_2026.09.04.749484v1.8","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-022-05120-2"},{"key":"2026092707455230000_2026.09.04.749484v1.9","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-29264-x"},{"key":"2026092707455230000_2026.09.04.749484v1.10","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1909306116"},{"key":"2026092707455230000_2026.09.04.749484v1.11","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-49650-x"},{"key":"2026092707455230000_2026.09.04.749484v1.12","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2318761121"},{"key":"2026092707455230000_2026.09.04.749484v1.13","doi-asserted-by":"publisher","DOI":"10.1128\/jb.173.12.3907-3910.1991"},{"key":"2026092707455230000_2026.09.04.749484v1.14","doi-asserted-by":"publisher","DOI":"10.1111\/mmi.15240"},{"key":"2026092707455230000_2026.09.04.749484v1.15","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.02077"},{"key":"2026092707455230000_2026.09.04.749484v1.16","doi-asserted-by":"publisher","DOI":"10.1016\/j.quascirev.2015.06.029"},{"key":"2026092707455230000_2026.09.04.749484v1.17","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-39147-9"},{"key":"2026092707455230000_2026.09.04.749484v1.18","doi-asserted-by":"publisher","DOI":"10.1016\/j.orggeochem.2018.10.006"},{"key":"2026092707455230000_2026.09.04.749484v1.19","doi-asserted-by":"crossref","first-page":"15234","DOI":"10.1016\/S0021-9258(17)42540-3","article-title":"Structural elucidation of a unique macrocyclic membrane lipid from a new, extremely thermophilic, deep-sea hydrothermal vent archaebacterium, Methanococcus jannaschii","volume":"259","year":"1984","journal-title":"J Biol Chem"},{"key":"2026092707455230000_2026.09.04.749484v1.20","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbc.2021.100691"},{"key":"2026092707455230000_2026.09.04.749484v1.21","doi-asserted-by":"publisher","DOI":"10.1021\/jo962327h"},{"key":"2026092707455230000_2026.09.04.749484v1.22","doi-asserted-by":"publisher","DOI":"10.1021\/jo972328p"},{"key":"2026092707455230000_2026.09.04.749484v1.23","doi-asserted-by":"publisher","DOI":"10.1002\/anie.202104759"},{"key":"2026092707455230000_2026.09.04.749484v1.24","doi-asserted-by":"publisher","DOI":"10.1002\/anie.202104051"},{"key":"2026092707455230000_2026.09.04.749484v1.25","doi-asserted-by":"publisher","DOI":"10.1021\/acssynbio.4c00235"},{"key":"2026092707455230000_2026.09.04.749484v1.26","doi-asserted-by":"publisher","DOI":"10.1021\/ja505629w"},{"key":"2026092707455230000_2026.09.04.749484v1.27","doi-asserted-by":"publisher","DOI":"10.1021\/acssynbio.6b00341"},{"key":"2026092707455230000_2026.09.04.749484v1.28","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.01323"},{"key":"2026092707455230000_2026.09.04.749484v1.29","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-12-394291-3.00030-7"},{"key":"2026092707455230000_2026.09.04.749484v1.30","doi-asserted-by":"publisher","DOI":"10.1021\/acs.biochem.7b01205"},{"key":"2026092707455230000_2026.09.04.749484v1.31","doi-asserted-by":"publisher","DOI":"10.1021\/acs.biochem.0c00358"},{"key":"2026092707455230000_2026.09.04.749484v1.32","doi-asserted-by":"publisher","DOI":"10.1107\/S0907444909052925"},{"key":"2026092707455230000_2026.09.04.749484v1.33","doi-asserted-by":"publisher","DOI":"10.1107\/S0907444913022750"},{"key":"2026092707455230000_2026.09.04.749484v1.34","doi-asserted-by":"publisher","DOI":"10.1107\/S0907444906019949"},{"key":"2026092707455230000_2026.09.04.749484v1.35","doi-asserted-by":"publisher","DOI":"10.1007\/BF00197809"},{"key":"2026092707455230000_2026.09.04.749484v1.36","doi-asserted-by":"publisher","DOI":"10.1107\/S0907444910007493"},{"key":"2026092707455230000_2026.09.04.749484v1.37","unstructured":"Smart, O. S. , Womack, T. O. , Sharff, A. , Flensburg, C. , Keller, P. , & Paciorek, W. , Vonrhein, C. and Bricogne, G. Grade, version 1.2.20., <https:\/\/www.globalphasing.com.> (2011)."},{"key":"2026092707455230000_2026.09.04.749484v1.38","doi-asserted-by":"publisher","DOI":"10.1002\/pro.3330"},{"key":"2026092707455230000_2026.09.04.749484v1.39","unstructured":"The PyMOL Molecular Graphics Systems v. 2.5 (Schr\u00f6dinger, 2021)."}],"container-title":[],"original-title":[],"link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.64898\/2026.09.04.749484","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,27]],"date-time":"2026-09-27T14:46:00Z","timestamp":1790520360000},"score":1,"resource":{"primary":{"URL":"http:\/\/biorxiv.org\/lookup\/doi\/10.64898\/2026.09.04.749484"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,9]]},"references-count":39,"URL":"https:\/\/doi.org\/10.64898\/2026.09.04.749484","relation":{},"subject":[],"published":{"date-parts":[[2026,9,9]]},"subtype":"preprint"}}