{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,28]],"date-time":"2026-02-28T07:53:24Z","timestamp":1772265204706,"version":"3.50.1"},"posted":{"date-parts":[[2019,8,29]]},"group-title":"PeerJ Preprints","reference-count":0,"publisher":"PeerJ","license":[{"start":{"date-parts":[[2019,8,29]],"date-time":"2019-08-29T00:00:00Z","timestamp":1567036800000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:p>\n                  <jats:bold>Background<\/jats:bold>\n                  : Owing to the rapid advances in DNA sequencing technologies, whole genome from more and more species are becoming available at increasing pace. For whole-genome analysis, idiograms provide a very popular, intuitive and effective way to map and visualize the genome-wide information, such as GC content, gene and repeat density, DNA methylation distribution, etc. However, most available software programs and web servers are available only for a few model species, such as human, mouse and fly. As boundaries between model and non-model species are shifting, tools are urgently needs to generate idiograms for a broad range of species are needed to help better understanding fundamental genome characteristics.\n                <\/jats:p>\n                <jats:p>\n                  <jats:bold>Results<\/jats:bold>\n                  : The R package\n                  <jats:italic>RIdeogram<\/jats:italic>\n                  allows users to build high-quality idiograms of any species of interest. It can map continuous and discrete genome-wide data on the idiograms and visualize them in a heat map and track labels, respectively.\n                <\/jats:p>\n                <jats:p>\n                  <jats:bold>Conclusion<\/jats:bold>\n                  : The visualization of genome-wide data mapping and comparison allow users to quickly establish a clear impression of the chromosomal distribution pattern, thus making\n                  <jats:italic>RIdeogram<\/jats:italic>\n                  a useful tool for any researchers working with omics.\n                <\/jats:p>","DOI":"10.7287\/peerj.preprints.27928v1","type":"posted-content","created":{"date-parts":[[2019,8,29]],"date-time":"2019-08-29T13:19:48Z","timestamp":1567084788000},"source":"Crossref","is-referenced-by-count":10,"title":["<i>RIdeogram<\/i>\n                  : drawing SVG graphics to visualize and map genome-wide data on the idiograms"],"prefix":"10.7287","author":[{"given":"Zhaodong","family":"Hao","sequence":"first","affiliation":[{"name":"Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China"},{"name":"Laboratory of Biochemistry, Wageningen University and Research, Wageningen, Netherlands"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dekang","family":"Lv","sequence":"additional","affiliation":[{"name":"Institute of Cancer Stem Cell, Dalian Medical University, Dalian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Ge","sequence":"additional","affiliation":[{"name":"Institute of Cancer Stem Cell, Dalian Medical University, Dalian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jisen","family":"Shi","sequence":"additional","affiliation":[{"name":"Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dolf","family":"Weijers","sequence":"additional","affiliation":[{"name":"Laboratory of Biochemistry, Wageningen University and Research, Wageningen, Netherlands"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guangchuang","family":"Yu","sequence":"additional","affiliation":[{"name":"Institute of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jinhui","family":"Chen","sequence":"additional","affiliation":[{"name":"Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"4443","container-title":[],"original-title":[],"link":[{"URL":"https:\/\/peerj.com\/preprints\/27928v1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/peerj.com\/preprints\/27928v1.xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/peerj.com\/preprints\/27928v1.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/peerj.com\/preprints\/27928v1.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,12,23]],"date-time":"2019-12-23T21:14:59Z","timestamp":1577135699000},"score":1,"resource":{"primary":{"URL":"https:\/\/peerj.com\/preprints\/27928v1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,8,29]]},"references-count":0,"aliases":["10.7287\/peerj.preprints.27928"],"URL":"https:\/\/doi.org\/10.7287\/peerj.preprints.27928v1","relation":{"references":[{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-1","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-2","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-3","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-4","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-5","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-6","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-7","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-8","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-9","asserted-by":"subject"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-4","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-3","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-2","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-1","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-9","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-8","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-7","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-6","asserted-by":"object"},{"id-type":"doi","id":"10.7287\/peerj.preprints.27928v1\/supp-5","asserted-by":"object"}]},"subject":[],"published":{"date-parts":[[2019,8,29]]},"subtype":"preprint"}}