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In the human fungal pathogen Candida albicans, CNV and LOH confer increased virulence and antifungal drug resistance, yet the mechanisms driving these rearrangements are not completely understood. Here, we unveil an extensive array of long repeat sequences (65\u20136499 bp) that are associated with CNV, LOH, and chromosomal inversions. Many of these long repeat sequences are uncharacterized and encompass one or more coding sequences that are actively transcribed. Repeats associated with genome rearrangements are predominantly inverted and separated by up to ~1.6 Mb, an extraordinary distance for homology-based DNA repair\/recombination in yeast. These repeat sequences are a significant source of genome plasticity across diverse strain backgrounds including clinical, environmental, and experimentally evolved isolates, and represent previously uncharacterized variation in the reference genome.<\/jats:p>","DOI":"10.7554\/elife.45954","type":"journal-article","created":{"date-parts":[[2019,6,7]],"date-time":"2019-06-07T08:00:19Z","timestamp":1559894419000},"source":"Crossref","is-referenced-by-count":119,"title":["Genome plasticity in Candida albicans is driven by long repeat sequences"],"prefix":"10.7554","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4522-7124","authenticated-orcid":true,"given":"Robert T","family":"Todd","sequence":"first","affiliation":[{"name":"Creighton University Medical School, Omaha, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tyler D","family":"Wikoff","sequence":"additional","affiliation":[{"name":"Creighton University Medical School, Omaha, United 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