{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T00:55:54Z","timestamp":1791248154019,"version":"4.1.0"},"reference-count":25,"publisher":"Wildlife Disease Association","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Journal of Wildlife Diseases"],"published-print":{"date-parts":[[2024,7,8]]},"abstract":"<jats:p>We report tracking of bacterial skin microbiota for two bare-nosed wombats (Vombatus ursinus) following in situ treatment for sarcoptic mange. Sarcoptes scabiei, the etiologic agent, has dramatic effects on skin microbiota. Our case reports show differing disease trajectory and bacterial beta diversity between the two treated individuals.<\/jats:p>","DOI":"10.7589\/jwd-d-23-00136","type":"journal-article","created":{"date-parts":[[2024,7,10]],"date-time":"2024-07-10T00:27:34Z","timestamp":1720571254000},"page":"734-738","source":"Crossref","is-referenced-by-count":1,"title":["Changes in the Skin Microbiota in Two Bare-Nosed Wombats (Vombatus ursinus) with Differing Recovery Trajectories Following Treatment for Sarcoptic Mange"],"prefix":"10.7589","volume":"60","author":[{"given":"Christina","family":"N\u00e6sborg-Nielsen","sequence":"first","affiliation":[{"name":"Department of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tasmania 7005, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kate","family":"Mounsey","sequence":"additional","affiliation":[{"name":"School of Health, University of Sunshine Coast, 90 Sippy Downs Drive, Sippy Downs, Queensland 4456, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vicky","family":"Wilkinson","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tasmania 7005, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Raphael","family":"Eisenhofer","sequence":"additional","affiliation":[{"name":"Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen 1353, Denmark"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christopher P.","family":"Burridge","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tasmania 7005, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Scott","family":"Carver","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tasmania 7005, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"4415","reference":[{"key":"4","doi-asserted-by":"publisher","unstructured":"E Bolyen, JR Rideout, MR Dillon, et al.  \"Nat Biotechnol.\"  37, \"Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.\" 852 (2019)","DOI":"10.1038\/s41587-019-0209-9"},{"key":"16","doi-asserted-by":"crossref","unstructured":"AM Martin, SA Richards, TA Fraser, et al.  \"J Appl Ecol.\"  56, \"Population-scale treatment informs solutions for control of environmentally transmitted wildlife disease.\" 2363 (2019)","DOI":"10.1111\/1365-2664.13467"},{"key":"6","doi-asserted-by":"publisher","unstructured":"BJ Callahan, PJ McMurdie, MJ Rosen, et al.  \"Nat Methods.\"  13, \"DADA2: High-resolution sample inference from Illumina amplicon data.\" 581 (2016)","DOI":"10.1038\/nmeth.3869"},{"key":"3","doi-asserted-by":"crossref","unstructured":"NA Bokulich, BD Kaehler, JR Rideout, et al.  \"Microbiome.\"  6, \"Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.\" 90 (2018)","DOI":"10.1186\/s40168-018-0470-z"},{"key":"20","doi-asserted-by":"crossref","unstructured":"L Ruykys, B Breed, D Schultz, et al.  \"J Wildl Dis.\"  49, \"Effects and treatment of sarcoptic mange in southern hairy-nosed wombats (Lasiorhinus latifrons).\" 312 (2013)","DOI":"10.7589\/2012-10-256"},{"key":"15","doi-asserted-by":"crossref","unstructured":"AM Martin, TA Fraser, JA Lesku, et al.  \"R Soc Open Sci.\"  5, \"The cascading pathogenic consequences of Sarcoptes scabiei infection that manifest in host disease.\" 180018 (2018)","DOI":"10.1098\/rsos.180018"},{"key":"13","doi-asserted-by":"crossref","unstructured":"EA Grice  and JA Segre  \"Nat Rev Microbiol.\"  9, \"The skin microbiome.\" 244 (2011)","DOI":"10.1038\/nrmicro2537"},{"key":"23","doi-asserted-by":"crossref","unstructured":"V Wilkinson, K Takano, D Nichols, et al.  \"Parasit Vectors.\"  14, \"Fluralaner as a novel treatment for sarcoptic mange in the bare-nosed wombat (Vombatus ursinus): Safety, pharmacokinetics, efficacy and practicable use.\" 18 (2021)","DOI":"10.1186\/s13071-020-04500-9"},{"key":"1","unstructured":"K Abarenkov, A Zirk, T Piirmann, et al.  \"UNITE Community.\"  \"UNITE QIIME release for Fungi 2.\" (2022)"},{"key":"2","doi-asserted-by":"crossref","unstructured":"C Bernigaud, M Zakrzewski, S Taylor, et al.  \"Microorganisms.\"  9, \"First description of the composition and the functional capabilities of the skin microbial community accompanying severe scabies infestation in humans.\" 907 (2021)","DOI":"10.3390\/microorganisms9050907"},{"key":"5","doi-asserted-by":"crossref","unstructured":"I. Brook,  \"J Clin Microbiol.\"  33, \"Microbiology of secondary bacterial infection in scabies lesions.\" 2139 (1995)","DOI":"10.1128\/jcm.33.8.2139-2140.1995"},{"key":"7","doi-asserted-by":"publisher","unstructured":"NM Davis, DM Proctor, SP Holmes, et al.  \"Microbiome.\"  6, \"Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.\" 226 (2018)","DOI":"10.1186\/s40168-018-0605-2"},{"key":"8","doi-asserted-by":"crossref","unstructured":"AL DeCandia, KN Leverett, BM vonHoldt,  \"Parasit Vectors.\"  12, \"Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites.\" 488 (2019)","DOI":"10.1186\/s13071-019-3724-0"},{"key":"9","doi-asserted-by":"crossref","unstructured":"MJ Delano  and PA Ward  \"Immunol Rev.\"  274, \"The immune system's role in sepsis progression, resolution, and long-term outcome.\" 330 (2016)","DOI":"10.1111\/imr.12499"},{"key":"11","doi-asserted-by":"crossref","unstructured":"LE Escobar, S Carver, PC Cross, et al.  \"Transbound Emerg Dis.\"  69, \"Sarcoptic mange: an emerging panzootic in wildlife.\" 927 (2021)","DOI":"10.1111\/tbed.14082"},{"key":"12","doi-asserted-by":"crossref","unstructured":"ZSL Foster, TJ Sharpton, NJ Gr\u00fcnwald,  \"PLoS Comput Biol.\"  13, \"Metacoder: An R package for visualization and manipulation of community taxonomic diversity data.\" e1005404 (2017)","DOI":"10.1371\/journal.pcbi.1005404"},{"key":"14","doi-asserted-by":"crossref","unstructured":"S Janssen, D McDonald, A Gonzalez, et al.  \"mSystems.\"  3, \"Phylogenetic placement of exact amplicon sequences improves associations with clinical information.\" e00021 (2018)","DOI":"10.1128\/mSystems.00021-18"},{"key":"17","doi-asserted-by":"crossref","unstructured":"C N\u00e6sborg-Nielsen, R Eisenhofer, TA Fraser, et al.  \"Parasit Vectors.\"  15, \"Sarcoptic mange changes bacterial and fungal microbiota of bare-nosed wombats (Vombatus ursinus).\" 323 (2022)","DOI":"10.1186\/s13071-022-05452-y"},{"key":"18","doi-asserted-by":"crossref","unstructured":"A Palleja, KH Mikkelsen, SK Forslund, et al.  \"Nat Microbiol.\"  3, \"Recovery of gut microbiota of healthy adults following antibiotic exposure.\" 1255 (2018)","DOI":"10.1038\/s41564-018-0257-9"},{"key":"19","doi-asserted-by":"crossref","unstructured":"MS Robeson, DR O'Rourke, BD Kaehler, et al.  \"PLoS Comput Biol.\"  17, \"RESCRIPt: Reproducible sequence taxonomy reference database management\" e1009581 (2020)","DOI":"10.1371\/journal.pcbi.1009581"},{"key":"21","doi-asserted-by":"crossref","unstructured":"EL Simpson, AD Irvine, LF Eichenfield, et al.  \"Semin Cut Med Sur.\"  35, \"Update on epidemiology, diagnosis, and disease course of atopic dermatitis.\" 84S (2016)","DOI":"10.12788\/j.sder.2016.041"},{"key":"22","doi-asserted-by":"crossref","unstructured":"PM Swe, M Zakrzewski, A Kelly, et al.  \"PLoS Negl Trop Dis.\"  8, \"Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model.\" e2897 (2014)","DOI":"10.1371\/journal.pntd.0002897"},{"key":"24","doi-asserted-by":"crossref","unstructured":"RH Yang, JH Su, JJ Shang, et al.  \"PLoS One.\"  13, \"Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing.\" e0206428 (2018)","DOI":"10.1371\/journal.pone.0206428"},{"key":"25","doi-asserted-by":"crossref","unstructured":"Y Yang, L Qu, I Mijakovic, et al.  \"Microb Cell Fact.\"  21, \"Advances in the human skin microbiota and its roles in cutaneous diseases.\" 176 (2022)","DOI":"10.1186\/s12934-022-01901-6"},{"key":"10","doi-asserted-by":"publisher","unstructured":"P. Dixon,  \"J Veg Sci.\"  14, \"VEGAN, a package of R functions for community ecology.\" 927 (2003)","DOI":"10.1111\/j.1654-1103.2003.tb02228.x"}],"container-title":["Journal of Wildlife Diseases"],"original-title":[],"deposited":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T00:28:44Z","timestamp":1791246524000},"score":1,"resource":{"primary":{"URL":"https:\/\/bioone.org\/journals\/journal-of-wildlife-diseases\/volume-60\/issue-3\/JWD-D-23-00136\/Changes-in-the-Skin-Microbiota-in-Two-Bare-Nosed-Wombats\/10.7589\/JWD-D-23-00136.full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,7,8]]},"references-count":25,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2024,7,1]]}},"URL":"https:\/\/doi.org\/10.7589\/jwd-d-23-00136","relation":{},"ISSN":["0090-3558","1943-3700"],"issn-type":[{"value":"0090-3558","type":"print"},{"value":"1943-3700","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,7,8]]}}}