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Kaper JB, Morris JG, Jr., Levine MM. Cholera. Clin Microbiol Rev. 1995;8:48-86.","DOI":"10.1128\/CMR.8.1.48"},{"key":"2","doi-asserted-by":"crossref","unstructured":"2. Muhlenbruch M, Grossart HP, Eigemann F, et al. Mini-review: Phytoplankton-derived polysaccharides in the marine environment and their interactions with heterotrophic bacteria. Environ Microbiol. 2018;20:2671-85.","DOI":"10.1111\/1462-2920.14302"},{"key":"3","doi-asserted-by":"crossref","unstructured":"3. Reidl J, Klose KE. <i>Vibrio cholerae<\/i> and cholera: out of the water and into the host. FEMS Microbiol Rev. 2002;26:125-39.","DOI":"10.1111\/j.1574-6976.2002.tb00605.x"},{"key":"4","doi-asserted-by":"crossref","unstructured":"4. Ghosh S, Rao KH, Sengupta M, et al. Two gene clusters co-ordinate for a functional N-acetylglucosamine catabolic pathway in <i>Vibrio<\/i> <i>cholerae<\/i>. Mol Microbiol. 2011;80:1549-60.","DOI":"10.1111\/j.1365-2958.2011.07664.x"},{"key":"5","doi-asserted-by":"crossref","unstructured":"5. Visick KL, Quirke KP, McEwen SM. Arabinose induces pellicle formation by <i>Vibrio fischeri<\/i>. Appl Environ Microbiol. 2013;79:2069-80.","DOI":"10.1128\/AEM.03526-12"},{"key":"6","doi-asserted-by":"crossref","unstructured":"6. Xu Q, Dziejman M, Mekalanos JJ. Determination of the transcriptome of <i>Vibrio cholerae<\/i> during intraintestinal growth and midexponential phase in vitro. Proc Natl Acad Sci USA. 2003;100:1286-91.","DOI":"10.1073\/pnas.0337479100"},{"key":"7","doi-asserted-by":"crossref","unstructured":"7. Iwanaga M, Yamamoto K. New medium for the production of cholera toxin by <i>Vibrio cholerae<\/i> O1 biotype El Tor. J Clin Microbiol. 1985;22:405-8.","DOI":"10.1128\/JCM.22.3.405-408.1985"},{"key":"8","doi-asserted-by":"crossref","unstructured":"8. Waldor MK, Mekalanos JJ. ToxR regulates virulence gene expression in non-O1 strains of <i>Vibrio cholerae<\/i> that cause epidemic cholera. Infect Immun. 1994;62:72-8.","DOI":"10.1128\/IAI.62.1.72-78.1994"},{"key":"9","doi-asserted-by":"crossref","unstructured":"9. Beck NA, Krukonis ES, DiRita VJ. TcpH influences virulence gene expression in <i>Vibrio cholerae<\/i> by inhibiting degradation of the transcription activator TcpP. J Bacteriol. 2004;186:8309-16.","DOI":"10.1128\/JB.186.24.8309-8316.2004"},{"key":"10","doi-asserted-by":"crossref","unstructured":"10. Liu Z, Yang M, Peterfreund GL, et al. <i>Vibrio cholerae<\/i> anaerobic induction of virulence gene expression is controlled by thiol-based switches of virulence regulator AphB. Proc Natl Acad Sci USA. 2011;108:810-5.","DOI":"10.1073\/pnas.1014640108"},{"key":"11","doi-asserted-by":"crossref","unstructured":"11. Bina XR, Taylor DL, Vikram A, et al. <i>Vibrio cholerae<\/i> ToxR downregulates virulence factor production in response to cyclo(Phe-Pro). mBio. 2013;4:e00366-13.","DOI":"10.1128\/mBio.00366-13"},{"key":"12","doi-asserted-by":"crossref","unstructured":"12. Bina XR, Howard MF, Taylor-Mulneix DL, et al. The <i>Vibrio cholerae<\/i> RND efflux systems impact virulence factor production and adaptive responses via periplasmic sensor proteins. PLoS Pathogens. 2018;14:e1006804.","DOI":"10.1371\/journal.ppat.1006804"},{"key":"13","doi-asserted-by":"crossref","unstructured":"13. Suckow G, Seitz P, Blokesch M. Quorum sensing contributes to natural transformation of <i>Vibrio cholerae<\/i> in a species-specific manner. J Bacteriol. 2011;193:4914-24.","DOI":"10.1128\/JB.05396-11"},{"key":"14","doi-asserted-by":"crossref","unstructured":"14. Lo Scrudato M, Blokesch M. A transcriptional regulator linking quorum sensing and chitin induction to render <i>Vibrio cholerae<\/i> naturally transformable. Nucleic Acids Res. 2013;41:3644-58.","DOI":"10.1093\/nar\/gkt041"},{"key":"15","doi-asserted-by":"crossref","unstructured":"15. Kimsey HH, Waldor MK. CTXphi immunity: application in the development of cholera vaccines. Proc Natl Acad Sci USA. 1998;95:7035-9.","DOI":"10.1073\/pnas.95.12.7035"},{"key":"16","doi-asserted-by":"crossref","unstructured":"16. Matson JS, Yoo HJ, Hakansson K, et al. Polymyxin B resistance in El Tor <i>Vibrio cholerae<\/i> requires lipid acylation catalyzed by MsbB. J Bacteriol. 2010;192:2044-52.","DOI":"10.1128\/JB.00023-10"},{"key":"17","doi-asserted-by":"crossref","unstructured":"17. Bogard RW, Davies BW, Mekalanos JJ. MetR-regulated <i>Vibrio cholerae<\/i> metabolism is required for virulence. mBio. 2012;3:e00236-12.","DOI":"10.1128\/mBio.00236-12"},{"key":"18","doi-asserted-by":"crossref","unstructured":"18. Patra T, Koley H, Ramamurthy T, et al. The Entner-Doudoroff pathway is obligatory for gluconate utilization and contributes to the pathogenicity of <i>Vibrio cholerae<\/i>. J Bacteriol. 2012;194:3377- 85.","DOI":"10.1128\/JB.06379-11"},{"key":"19","doi-asserted-by":"crossref","unstructured":"19. Roy S, Patra T, Golder T, et al. Characterization of the gluconate utilization system of <i>Vibrio cholerae<\/i> with special reference to virulence modulation. Pathog Dis. 2016;74:ftw085.","DOI":"10.1093\/femspd\/ftw085"},{"key":"20","doi-asserted-by":"crossref","unstructured":"20. Luo P, He X, Liu Q, et al. Developing universal genetic tools for rapid and efficient deletion mutation in <i>Vibrio species<\/i> based on suicide T-vectors carrying a novel counterselectable marker, vmi480.PloS ONE. 2015;10:e0144465.","DOI":"10.1371\/journal.pone.0144465"},{"key":"21","doi-asserted-by":"crossref","unstructured":"21. Echazarreta MA, Kepple JL, Yen LH, et al. A critical region in the FlaA Flagellin facilitates filament formation of the <i>Vibrio cholerae<\/i> flagellum. J Bacteriol. 2018;200:e00029-18.","DOI":"10.1128\/JB.00029-18"},{"key":"22","unstructured":"22. Somarny WM, Mariana NS, Rozita R, et al. Cloning and expression of <i>Vibrio cholerae<\/i> virulence gene, accessory cholera enterotoxin (ace). Southeast Asian J Trop Med Public Health. 2004;35:856-62."},{"key":"23","doi-asserted-by":"crossref","unstructured":"23. Rohmer L, Hocquet D, Miller SI. Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis. Trends Microbiol. 2011;19:341-8.","DOI":"10.1016\/j.tim.2011.04.003"},{"key":"24","doi-asserted-by":"crossref","unstructured":"24. Minato Y, Fassio SR, Wolfe AJ, et al. Central metabolism controls transcription of a virulence gene regulator in <i>Vibrio cholerae<\/i>. Microbiology. 2013;159:792-802.","DOI":"10.1099\/mic.0.064865-0"},{"key":"25","unstructured":"25. Oh YT, Kim HY, Kim EJ, et al. Selective and efficient elimination of <i>Vibrio cholerae<\/i> with a chemical modulator that targets glucose metabolism. Front Cell Infect Microbiol. 2016;6:156."},{"key":"26","doi-asserted-by":"crossref","unstructured":"26. Santiago AE, Yan MB, Tran M, et al. A large family of anti-activators accompanying XylS\/AraC family regulatory proteins. Mol Microbiol. 2016;101:314-32.","DOI":"10.1111\/mmi.13392"},{"key":"27","doi-asserted-by":"crossref","unstructured":"27. Stringer AM, Currenti S, Bonocora RP, et al. Genome-scale analyses of <i>Escherichia coli<\/i> and <i>Salmonella enterica<\/i> AraC reveal noncanonical targets and an expanded core regulon. J Bacteriol. 2014;196:660-71.","DOI":"10.1128\/JB.01007-13"},{"key":"28","doi-asserted-by":"crossref","unstructured":"28. Ali A, Morris JG, Jr., Johnson JA. Sugars inhibit expression of the rugose phenotype of <i>Vibrio cholerae<\/i>. J Clin Microbiol. 2005;43:1426-9.","DOI":"10.1128\/JCM.43.3.1426-1429.2005"},{"key":"29","doi-asserted-by":"crossref","unstructured":"29. Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001;29:e45.","DOI":"10.1093\/nar\/29.9.e45"},{"key":"30","doi-asserted-by":"crossref","unstructured":"30. Schleif R. AraC protein, regulation of the l-arabinose operon in <i>Escherichia coli<\/i>, and the light switch mechanism of AraC action. FEMS Microbiol Rev. 2010;34:779-96.","DOI":"10.1111\/j.1574-6976.2010.00226.x"},{"key":"31","doi-asserted-by":"crossref","unstructured":"31. Higgins DE, Nazareno E, DiRita VJ. The virulence gene activator ToxT from <i>Vibrio cholerae<\/i> is a member of the AraC family of transcriptional activators. J Bacteriol. 1992;174:6974-80.","DOI":"10.1128\/JB.174.21.6974-6980.1992"},{"key":"32","doi-asserted-by":"crossref","unstructured":"32. Ogierman MA, Manning PA. Homology of TcpN, a putative regulatory protein of <i>Vibrio cholerae<\/i>, to the AraC family of transcriptional activators. Gene. 1992;116:93-7.","DOI":"10.1016\/0378-1119(92)90634-2"},{"key":"33","doi-asserted-by":"crossref","unstructured":"33. Childers BM, Klose KE. Regulation of virulence in <i>Vibrio cholerae<\/i>: the ToxR regulon. 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