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Satoh K, Makimura K, Hasumi Y, et al. <i>Candida auris<\/i> sp. nov., a novel ascomycetous yeast isolated from the external ear canal of an inpatient in a Japanese hospital. Microbiol Immunol. 2009;53:41-44. Erratum in Microbiol Immunol. 2018;62:205.","DOI":"10.1111\/j.1348-0421.2008.00083.x"},{"key":"2","doi-asserted-by":"crossref","unstructured":"2. Chowdhary A, Sharma C, Duggal S, et al. New clonal strain of <i>Candida auris<\/i>, Delhi, India. Emerg Infect Dis. 2013;19:1670-1673.","DOI":"10.3201\/eid1910.130393"},{"key":"3","doi-asserted-by":"crossref","unstructured":"3. Lockhart SR, Etienne KA, Vallabhaneni S, et al. Simultaneous emergence of multidrug-resistant <i>Candida auris<\/i> on 3 continents confirmed by whole-genome sequencing and epidemiological analyses. Clin Infect Dis. 2017;64:134-140.","DOI":"10.1093\/cid\/ciw691"},{"key":"4","doi-asserted-by":"crossref","unstructured":"4. Rhodes J, Abdolrasouli A, Farrer RA, et al. Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen <i>Candida auris<\/i>. Emerg Microbes Infect. 2018;7:43. Erratum in Emerg Microbes Infect. 2018;7:43.","DOI":"10.1038\/s41426-018-0045-x"},{"key":"5","doi-asserted-by":"crossref","unstructured":"5. Kekana D, Naicker SD, Shuping L, et al. <i>Candida auris<\/i> clinical isolates associated with outbreak in neonatal unit of Tertiary Academic Hospital, South Africa. Emerg Infect Dis. 2023;29:2044-2053.","DOI":"10.3201\/eid2910.230181"},{"key":"6","doi-asserted-by":"crossref","unstructured":"6. Bing J, Du H, Guo P, et al. <i>Candida auris<\/i>-associated hospitalizations and outbreaks, China, 2018\u20132023. Emerg Microbes Infect. 2024;13:2302843.","DOI":"10.1080\/22221751.2024.2302843"},{"key":"7","doi-asserted-by":"crossref","unstructured":"7. Biran R, Cohen R, Finn T, et al. Nationwide outbreak of <i>Candida auris<\/i> infections driven by COVID-19 hospitalizations, Israel, 2021\u20132022. 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Emergence of the novel sixth <i>Candida auris<\/i> clade VI in Bangladesh. Microbiol Spectr. 2024;12:e0354023.","DOI":"10.1128\/spectrum.03540-23"},{"key":"12","doi-asserted-by":"crossref","unstructured":"12. Ohashi Y, Matono T, Suzuki S, et al. The first case of clade I <i>Candida auris<\/i> candidemia in a patient with COVID-19 in Japan. J Infect Chemother. 2023;29:713-717.","DOI":"10.1016\/j.jiac.2023.03.018"},{"key":"13","doi-asserted-by":"crossref","unstructured":"13. Iguchi S, Mizushima R, Kamada K, et al. The Second <i>Candida auris<\/i> isolate from aural discharge in Japan. Jpn J Infect Dis. 2018;71:174-175.","DOI":"10.7883\/yoken.JJID.2017.466"},{"key":"14","doi-asserted-by":"crossref","unstructured":"14. Sekizuka T, Iguchi S, Umeyama T, et al. Clade II <i>Candida auris<\/i> possess genomic structural variations related to an ancestral strain. PLoS One. 2019;14:e0223433.","DOI":"10.1371\/journal.pone.0223433"},{"key":"15","doi-asserted-by":"crossref","unstructured":"15. Akinbobola AB, Kean R, Hanifi SMA, et al. Environmental reservoirs of the drug-resistant pathogenic yeast <i>Candida auris<\/i>. PLoS Pathog. 2023;19:e1011268.","DOI":"10.1371\/journal.ppat.1011268"},{"key":"16","doi-asserted-by":"crossref","unstructured":"16. Sansom SE, Gussin GM, Schoeny M, et al. Rapid environmental contamination with <i>Candida auris<\/i> and multidrug-resistant bacterial pathogens near colonized patients. Clin Infect Dis. 2024;78:1276-1284.","DOI":"10.1093\/cid\/ciad752"},{"key":"17","doi-asserted-by":"crossref","unstructured":"17. Leonhard SE, Chong GM, Foudraine DE, et al. Proposal for a screening protocol for <i>Candida auris<\/i> colonization. J Hosp Infect. 2024;146:31-36.","DOI":"10.1016\/j.jhin.2023.12.019"},{"key":"18","doi-asserted-by":"crossref","unstructured":"18. Lyman M, Forsberg K, Sexton DJ, et al. Worsening spread of <i>Candida auris<\/i> in the United States, 2019 to 2021. Ann Intern Med. 2023;176:489-495.","DOI":"10.7326\/M22-3469"},{"key":"19","doi-asserted-by":"crossref","unstructured":"19. Misas E, Escand\u00f3n PL, Gade L, et al. Genomic epidemiology and antifungal-resistant characterization of <i>Candida auris<\/i>, Colombia, 2016\u20132021. mSphere. 2024;9:e0057723.","DOI":"10.1128\/msphere.00577-23"},{"key":"20","doi-asserted-by":"crossref","unstructured":"20. Castanheira M, Deshpande LM, Rhomberg PR, et al. Recent increase in <i>Candida auris<\/i> frequency in the SENTRY surveillance program: antifungal activity and genotypic characterization. Antimicrob Agents Chemother. 2024;68:e0057024.","DOI":"10.1128\/aac.00570-24"},{"key":"21","doi-asserted-by":"crossref","unstructured":"21. Kwon YJ, Shin JH, Byun SA, et al. <i>Candida auris<\/i> clinical isolates from South Korea: identification, antifungal susceptibility, and genotyping. 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Nanopore genome sequencing and variant analysis of the susceptible <i>Candida auris<\/i> strain L1537\/2020, salvador, Brazil. Mycopathologia. 2021;186:883-887.","DOI":"10.1007\/s11046-021-00593-7"},{"key":"26","doi-asserted-by":"crossref","unstructured":"26. Edge P, Bansal V. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Nat Commun. 2019;10:4660.","DOI":"10.1038\/s41467-019-12493-y"},{"key":"27","unstructured":"27. Ortiz EM. vcf2phylip v2.0: convert a VCF matrix into several matrix formats for phylogenetic analysis. (v2.0). Zenodo, 2019."},{"key":"28","doi-asserted-by":"crossref","unstructured":"28. Minh BQ, Schmidt HA, Chernomor O, et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 2020;37:1530-1534.","DOI":"10.1093\/molbev\/msaa015"},{"key":"29","doi-asserted-by":"crossref","unstructured":"29. Yu G., Smith DK, Zhu H, et al. ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods Ecol Evol. 2017;8:28-36.","DOI":"10.1111\/2041-210X.12628"},{"key":"30","unstructured":"30. Clinical and Laboratory Standards Institute (CLSI). Reference method for broth dilution antifungal susceptibility testing of yeasts, 4th ed. Document M27. Berwyn: PA: CLSI;2017."},{"key":"31","doi-asserted-by":"crossref","unstructured":"31. Taori SK, Rhodes J, Khonyongwa K, et al. First experience of implementing <i>Candida auris<\/i> real-time PCR for surveillance in the UK: detection of multiple introductions with two international clades and improved patient outcomes. J Hosp Infect. 2022;127:111-120.","DOI":"10.1016\/j.jhin.2022.06.009"},{"key":"32","doi-asserted-by":"crossref","unstructured":"32. Rhodes J, Fisher MC. Global epidemiology of emerging <i>Candida auris<\/i>. Curr Opin Microbiol. 2019;52:84-89.","DOI":"10.1016\/j.mib.2019.05.008"},{"key":"33","doi-asserted-by":"crossref","unstructured":"33. Casalini G, Giacomelli A, Antinori S. The WHO fungal priority pathogens list: a crucial reappraisal to review the prioritisation. Lancet Microbe. 2024;5:717-724.","DOI":"10.1016\/S2666-5247(24)00042-9"},{"key":"34","doi-asserted-by":"crossref","unstructured":"34. Byun SA, Kwon YJ, Lee GY, et al. Virulence traits and azole resistance in Korean <i>Candida auris<\/i> isolates. J Fungi (Basel). 2023;9:979.","DOI":"10.3390\/jof9100979"},{"key":"35","doi-asserted-by":"crossref","unstructured":"35. Forg\u00e1cs L, Borman AM, Pr\u00e9post E, et al. Comparison of in vivo pathogenicity of four <i>Candida auris<\/i> clades in a neutropenic bloodstream infection murine model. Emerg Microbes Infect. 2020;9:1160-1169.","DOI":"10.1080\/22221751.2020.1771218"},{"key":"36","doi-asserted-by":"crossref","unstructured":"36. De Luca DG, Alexander DC, Dingle TC, et al. Four genomic clades of <i>Candida auris<\/i> identified in Canada, 2012-2019. Med Mycol. 2022;60:myab079.","DOI":"10.1093\/mmy\/myab079"},{"key":"37","doi-asserted-by":"crossref","unstructured":"37. Welsh RM, Sexton DJ, Forsberg K, et al. Insights into the unique nature of the east asian clade of the emerging pathogenic yeast <i>Candida auris<\/i>. J Clin Microbiol. 2019;57:e00007-19.","DOI":"10.1128\/JCM.00007-19"},{"key":"38","doi-asserted-by":"crossref","unstructured":"38. Du H, Bing J, Nobile CJ, et al. <i>Candida auris<\/i> infections in China. 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