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The genome sequence is 863 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 20.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 32,619 protein coding genes.\n                  <\/ns3:p>","DOI":"10.12688\/wellcomeopenres.18790.1","type":"journal-article","created":{"date-parts":[[2023,1,19]],"date-time":"2023-01-19T08:55:09Z","timestamp":1674118509000},"page":"30","update-policy":"https:\/\/doi.org\/10.12688\/wellcomeopenres.crossmark-policy","source":"Crossref","is-referenced-by-count":3,"title":["The genome sequence of a snail-killing fly, Pherbina coryleti (Scopoli, 1763)"],"prefix":"10.12688","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1255-0045","authenticated-orcid":false,"given":"Olga","family":"Sivell","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ryan","family":"Mitchell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Duncan","family":"Sivell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Natural History Museum Genome Acquisition Lab","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Darwin Tree of Life Barcoding collective","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Wellcome Sanger Institute Tree of Life programme","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Tree of Life Core Informatics collective","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"name":"Darwin Tree of Life Consortium","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"2560","published-online":{"date-parts":[[2023,1,19]]},"reference":[{"key":"ref-1","doi-asserted-by":"publisher","first-page":"892-905","DOI":"10.1111\/1755-0998.13160","article-title":"MitoFinder: Efficient automated large\u2010scale extraction of mitogenomic data in target enrichment phylogenomics.","volume":"20","author":"R Allio","year":"2020","journal-title":"Mol Ecol Resour."},{"key":"ref-2","article-title":"The British Sciomyzidae.","author":"S Ball","year":"2017","journal-title":"Dipterists Forum, unpublished identification guide."},{"key":"ref-3","doi-asserted-by":"publisher","DOI":"10.1079\/9780851993195.0159","article-title":"Overview of the biology of marsh flies (Diptera: Sciomyzidae), with special reference to predators and parasitoids of terrestrial gastropods.","author":"G Barker","year":"2014"},{"key":"ref-4","doi-asserted-by":"publisher","first-page":"1-12","DOI":"10.1007\/BF00014252","article-title":"Egg laying studies on some British sciomyzid flies (Diptera: Sciomyzidae).","volume":"43","author":"O Beaver","year":"1973","journal-title":"Hydrobiologia."},{"key":"ref-5","doi-asserted-by":"publisher","first-page":"443-462","DOI":"10.1007\/BF00036309","article-title":"Laboratory studies on competition for food of the larvae of some British sciomyzid flies (Diptera: Sciomyzidae) I. Intra-specific competition.","volume":"44","author":"O Beaver","year":"1974","journal-title":"Hydrobiologia."},{"key":"ref-6","doi-asserted-by":"publisher","first-page":"lqaa108","DOI":"10.1093\/nargab\/lqaa108","article-title":"BRAKER2: Automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.","volume":"3","author":"T Br\u016fna","year":"2021","journal-title":"NAR Genom Bioinform."},{"key":"ref-7","doi-asserted-by":"publisher","first-page":"1361-1374","DOI":"10.1534\/g3.119.400908","article-title":"BlobToolKit - interactive quality assessment of genome assemblies.","volume":"10","author":"R Challis","year":"2020","journal-title":"G3 (Bethesda)."},{"key":"ref-8","doi-asserted-by":"publisher","first-page":"170-175","DOI":"10.1038\/s41592-020-01056-5","article-title":"Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.","volume":"18","author":"H Cheng","year":"2021","journal-title":"Nat Methods."},{"key":"ref-9","doi-asserted-by":"publisher","first-page":"2896-2898","DOI":"10.1093\/bioinformatics\/btaa025","article-title":"Identifying and removing haplotypic duplication in primary genome assemblies.","volume":"36","author":"D Guan","year":"2020","journal-title":"Bioinformatics."},{"key":"ref-10","article-title":"PretextView (Paired REad TEXTure Viewer): A desktop application for viewing pretext contact maps.","author":"E Harry","year":"2022"},{"key":"ref-11","doi-asserted-by":"publisher","first-page":"giaa153","DOI":"10.1093\/gigascience\/giaa153","article-title":"Significantly improving the quality of genome assemblies through curation.","volume":"10","author":"K Howe","year":"2021","journal-title":"GigaScience."},{"key":"ref-12","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1186\/s13059-018-1486-1","article-title":"HiGlass: Web-based visual exploration and analysis of genome interaction maps.","volume":"19","author":"P Kerpedjiev","year":"2018","journal-title":"Genome Biol."},{"key":"ref-13","first-page":"1-38","article-title":"Biology and immature stages of Pherbina and Psacadina (Diptera: Sciomyzidae).","volume":"9","author":"L Knutson","year":"1975","journal-title":"Acta Scieniiarum Naiuralium Academiae Scientiarum Bohemoslovacae."},{"key":"ref-14","article-title":"Biology of Snail-killing Sciomyzidae Flies.","author":"L Knutson","year":"2011"},{"key":"ref-15","doi-asserted-by":"publisher","first-page":"4647-4654","DOI":"10.1093\/molbev\/msab199","article-title":"BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.","volume":"38","author":"M Manni","year":"2021","journal-title":"Mol Biol Evol."},{"key":"ref-16","first-page":"162-209","article-title":"A cladistic analysis of Sciomyzidae Fall\u00e9n (Diptera).","volume":"113","author":"L Marinoni","year":"2000","journal-title":"Proceedings of the Biological Society of Washington."},{"key":"ref-17","doi-asserted-by":"publisher","first-page":"1665-1680","DOI":"10.1016\/j.cell.2014.11.021","article-title":"A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.","volume":"159","author":"S Rao","year":"2014","journal-title":"Cell."},{"key":"ref-18","doi-asserted-by":"publisher","first-page":"737-746","DOI":"10.1038\/s41586-021-03451-0","article-title":"Towards complete and error-free genome assemblies of all vertebrate species.","volume":"592","author":"A Rhie","year":"2021","journal-title":"Nature."},{"key":"ref-19","article-title":"The Sciomyzidae (Diptera) of Fennoscandia and Denmark.","author":"R Rozko\u0161n\u00fd","year":"1984"},{"key":"ref-20","first-page":"1-156","article-title":"A review of the Palaearctic Sciomyzidae (Diptera)","volume":"86","author":"R Rozko\u0161n\u00fd","year":"1987"},{"key":"ref-21","first-page":"17-122","article-title":"Insecta: Diptera: Sciomyzidae.","author":"R Rozko\u0161n\u00fd","year":"2002"},{"key":"ref-22","first-page":"1-38","article-title":"Species accounts for Sciomyzidae and Phaeomyiidae (Diptera) known from the Atlantic zone of Europe.","volume":"19","author":"M Speight","year":"2012","journal-title":"Dipterists Digest."},{"key":"ref-23","doi-asserted-by":"publisher","first-page":"404-415","DOI":"10.1111\/cla.12002","article-title":"A phylogenetic analysis of Sciomyzidae (Diptera) and some related genera.","volume":"29","author":"A T\u00f3thov\u00e1","year":"2013","journal-title":"Cladistics."},{"key":"ref-24","article-title":"MitoHiFi.","author":"M Uliano-Silva","year":"2021"},{"key":"ref-26","doi-asserted-by":"publisher","DOI":"10.1101\/2022.06.09.495093","article-title":"YaHS: yet another Hi-C scaffolding tool.","author":"C Zhou","year":"2022","journal-title":"bioRxiv."}],"container-title":["Wellcome Open Research"],"language":"en","link":[{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1\/xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1\/pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1\/iparadigms","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,30]],"date-time":"2023-10-30T10:15:23Z","timestamp":1698660923000},"score":14.4834,"resource":{"primary":{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1"}},"issued":{"date-parts":[[2023,1,19]]},"references-count":25,"URL":"https:\/\/doi.org\/10.12688\/wellcomeopenres.18790.1","relation":{"has-review":[{"id-type":"doi","id":"10.21956\/wellcomeopenres.20835.r62301","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20835.r67664","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20835.r67664","asserted-by":"object"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20835.r62301","asserted-by":"object"}]},"ISSN":["2398-502X"],"issn-type":[{"value":"2398-502X","type":"electronic"}],"published":{"date-parts":[[2023,1,19]]},"assertion":[{"value":"Indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1#article-reports","order":0,"name":"referee-status","label":"Referee status","group":{"name":"current-referee-status","label":"Current Referee Status"}},{"value":"10.21956\/wellcomeopenres.20835.r62301, Sanjay Kumar Pradhan, Department of Agricultural Entomology, College of Agriculture, University of Agricultural Sciences, Bengaluru, Karnataka, 09 Aug 2023, version 1, indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1#referee-response-62301","order":0,"name":"referee-response-62301","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"10.21956\/wellcomeopenres.20835.r67664, Liping Yan, Beijing Forestry University, Beijing, 30 Oct 2023, version 1, indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1#referee-response-67664","order":1,"name":"referee-response-67664","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"This work was supported by Wellcome through core funding to the Wellcome Sanger Institute (206194, <a href=https:\/\/doi.org\/10.35802\/206194>https:\/\/doi.org\/10.35802\/206194<\/a>) and the Darwin Tree of Life Discretionary Award (218328, <a href=https:\/\/doi.org\/10.35802\/218328>https:\/\/doi.org\/10.35802\/218328<\/a>). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","order":2,"name":"grant-information","label":"Grant Information"},{"value":"This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.","order":0,"name":"copyright-info","label":"Copyright"}]},{"institution":[{"name":"University of Agricultural Sciences","place":["Bengaluru, Karnataka"],"department":["Department of Agricultural Entomology, College of Agriculture"]}],"indexed":{"date-parts":[[2026,5,21]],"date-time":"2026-05-21T19:38:17Z","timestamp":1779392297089,"version":"3.53.1"},"reference-count":0,"publisher":"F1000 Research Ltd","license":[{"start":{"date-parts":[[2023,8,9]],"date-time":"2023-08-09T00:00:00Z","timestamp":1691539200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[]},"published-print":{"date-parts":[[2023,8,9]]},"DOI":"10.21956\/wellcomeopenres.20835.r62301","type":"peer-review","created":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T13:37:08Z","timestamp":1763732228000},"source":"Crossref","is-referenced-by-count":0,"title":["Peer Review Report For: The genome sequence of a snail-killing fly, Pherbina coryleti (Scopoli, 1763) [version 1; peer review: 2 approved]"],"prefix":"10.21956","member":"2560","review":{"type":"referee-report","stage":"post-publication","competing-interest-statement":"No competing interests were declared"},"contributor":[{"given":"Sanjay Kumar","family":"Pradhan","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"reviewer"}]}],"deposited":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T13:37:16Z","timestamp":1763732236000},"score":11.195381,"resource":{"primary":{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1#referee-response-62301"}},"issued":{"date-parts":[[2023,8,9]]},"references-count":0,"URL":"https:\/\/doi.org\/10.21956\/wellcomeopenres.20835.r62301","relation":{"is-review-of":[{"id-type":"doi","id":"10.12688\/wellcomeopenres.18790.1","asserted-by":"subject"},{"id-type":"doi","id":"10.12688\/wellcomeopenres.18790.1","asserted-by":"object"}]},"published":{"date-parts":[[2023,8,9]]}},{"institution":[{"name":"Beijing Forestry University","place":["Beijing"]}],"indexed":{"date-parts":[[2026,5,21]],"date-time":"2026-05-21T18:25:28Z","timestamp":1779387928274,"version":"3.53.1"},"reference-count":0,"publisher":"F1000 Research Ltd","license":[{"start":{"date-parts":[[2023,10,30]],"date-time":"2023-10-30T00:00:00Z","timestamp":1698624000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[]},"published-print":{"date-parts":[[2023,10,30]]},"DOI":"10.21956\/wellcomeopenres.20835.r67664","type":"peer-review","created":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T13:17:09Z","timestamp":1763731029000},"source":"Crossref","is-referenced-by-count":0,"title":["Peer Review Report For: The genome sequence of a snail-killing fly, Pherbina coryleti (Scopoli, 1763) [version 1; peer review: 2 approved]"],"prefix":"10.21956","member":"2560","review":{"type":"referee-report","stage":"post-publication","competing-interest-statement":"No competing interests were declared"},"contributor":[{"given":"Liping","family":"YAN","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"reviewer"}]}],"deposited":{"date-parts":[[2025,11,21]],"date-time":"2025-11-21T13:17:26Z","timestamp":1763731046000},"score":11.173124,"resource":{"primary":{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-30\/v1#referee-response-67664"}},"issued":{"date-parts":[[2023,10,30]]},"references-count":0,"URL":"https:\/\/doi.org\/10.21956\/wellcomeopenres.20835.r67664","relation":{"is-review-of":[{"id-type":"doi","id":"10.12688\/wellcomeopenres.18790.1","asserted-by":"subject"}]},"published":{"date-parts":[[2023,10,30]]}},{"indexed":{"date-parts":[[2026,10,31]],"date-time":"2026-10-31T10:31:36Z","timestamp":1793442696641,"version":"4.5.0"},"reference-count":47,"publisher":"Entomological Society of Washington","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Proceedings of the Entomological Society of Washington"],"published-print":{"date-parts":[[2021,1,29]]},"abstract":"<jats:p>DictyodesMalloch, 1933 (Diptera: Sciomyzidae) is a new synonym of RetelliaRobineau-Desvoidy, 1830, with Retellia claropunctataRobineau-Desvoidy, 1830 (Tetanocera) serving as the type species of Retellia. Steyskal's (1974) analysis is confirmed, that Malloch (1933) redescribed Tetanocera dictyodesWiedemann, 1830 [as Dictyodes dictyodes] from a specimen that Malloch misidentified as T. dictyodes but which was, in fact, an undescribed species. Retellia platensis (Steyskal, 1974) (Dictyodes) new combination is confirmed as a new synonym of Retellia lacera (Wiedemann, 1830) (Tetanocera) new combination; a lectotype and a paralectotype are designated for the latter species. Steyskal's (1974) designation of Pherbina cayennensisRobineau-Desvoidy, 1830, an unplaced but possibly related species, as a nomen dubium is supported. A key to distinguish species of Retellia from similar-looking species in the Neotropical Region and a key to the two valid species of Retellia are provided. Relationships among Retellia and other genera of Sciomyzidae are discussed.<\/jats:p>","DOI":"10.4289\/0013-8797.123.1.147","type":"journal-article","created":{"date-parts":[[2021,2,1]],"date-time":"2021-02-01T04:24:14Z","timestamp":1612153454000},"page":"147-168","source":"Crossref","is-referenced-by-count":1,"title":["The Taxonomy and Nomenclature of Retellia Robineau-Desvoidy, 1830 and Dictyodes Malloch, 1933, with Notes on Pherbina cayennensis Robineau-Desvoidy, 1830 (Diptera: Sciomyzidae)"],"prefix":"10.4289","volume":"123","author":[{"given":"William L.","family":"Murphy","sequence":"first","affiliation":[{"name":"(WLM) 7835 Tufton Street, Fishers, Indiana 46038, USA (e-mail: murph3000@gmail.com)"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jay","family":"Abercrombie","sequence":"additional","affiliation":[{"name":"(JA) 2321 Bixler Drive, Suffield, Ohio 44260, USA (e-mail: marshfly@sbcglobal.net)"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lloyd V.","family":"Knutson","sequence":"additional","affiliation":[{"name":"(LVK) Last address: Salita degli Albito, 29, Gaeta, Latina 04024, Italy (deceased 10 January 2018)"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"2824","reference":[{"key":"24","unstructured":"L. Marinoni  and W. N. Mathis  \"Proceedings of the Biological Society of Washington.\"  113, \"A cladistic analysis of Sciomyzidae Fall\u00e9n (Diptera).\" 162 (2000)"},{"key":"26","unstructured":"J. W. Meigen,  \"Systematische Beschreibung der bekannten europ\u00e4ischen zweifl\u00fcgeligen Insekten.\"  6, 401 (1830)"},{"key":"1","unstructured":"J. Abercrombie  and C. O. Berg  \"Revista Brasileira de Entomologia.\"  22, \"Malacophagous Diptera of South America: biology and immature stages of Dictyodes dictyodes.\" 23 (1978)"},{"key":"2","doi-asserted-by":"crossref","unstructured":"L. Agassiz,  \"Nomenclatoris zoologici index universalis, continens nomina systematica classium, ordinum, familiarum et generum animalium omnium, tam viventium quam fossilium, secundum ordinem alphabeticum unicum disposita, adjectis homonymiis plantarum, nec non variis adnotationibus et emendationibus. [= Fasc. 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Steyskal,  \"Entomological News.\"  84, \"A new classification of the Sepedon group of the family Sciomyzidae (Diptera) with two new genera.\" 143 (1973)"}],"container-title":["Proceedings of the Entomological Society of Washington"],"deposited":{"date-parts":[[2026,10,31]],"date-time":"2026-10-31T09:46:53Z","timestamp":1793440013000},"score":10.5512295,"resource":{"primary":{"URL":"https:\/\/bioone.org\/journals\/proceedings-of-the-entomological-society-of-washington\/volume-123\/issue-1\/0013-8797.123.1.147\/The-Taxonomy-and-Nomenclature-of-Retellia-Robineau-Desvoidy-1830-and\/10.4289\/0013-8797.123.1.147.full"}},"issued":{"date-parts":[[2021,1,29]]},"references-count":47,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2021,1,1]]}},"URL":"https:\/\/doi.org\/10.4289\/0013-8797.123.1.147","ISSN":["0013-8797","2378-6477"],"issn-type":[{"value":"0013-8797","type":"print"},{"value":"2378-6477","type":"electronic"}],"published":{"date-parts":[[2021,1,29]]}}],"items-per-page":5,"query":{"start-index":0,"search-terms":null}}}